KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:26 2014 Check: 00 .. Name: ENSTTRP00000008381/1-1068 Len: 1846 Check: 7695 Weight: 1.00 Name: ENSBTAP00000053803/1-1174 Len: 1846 Check: 4447 Weight: 1.00 Name: bmy_11865T0/1-1260 Len: 1846 Check: 5287 Weight: 1.00 Name: BACU001097/1-1696 Len: 1846 Check: 1440 Weight: 1.00 // 1 50 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 MADEIDWLDL PGRWTYGVDR GGRVFFINDE EKSTSWVHPA TESPIQSGHS BACU001097/1-1696 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 SSPGLPKGWE MDSTQEGAVY FINHNERRNT FLHPLTGQVP EENKKFDLKI BACU001097/1-1696 ---------- ---------- ---------- ---------- ---------I 101 150 ENSTTRP00000008381/1-1068 ----MSNKTG GKRPTTANSD LSNHNMVSEV PPERPSVRAT RTPRKAIAFG ENSBTAP00000053803/1-1174 ----MSNKAG GKRSAATDRD LTNHSMVSEV PPERPGVRAA RPSRKAIAFG bmy_11865T0/1-1260 STLDMSNKAG GKHPTTTNSD LSNHNMVSEV PPERPSVRAT RTSRKAIAFG BACU001097/1-1696 STLDMSNKAG GKRPTTTNSD LSNNNMVSEV PPERPSVRAT RTSRKAIAFG 151 200 ENSTTRP00000008381/1-1068 KRSHSMKRNP SAPVTKAGWL FKQASSGVKQ WNKRWFVLVD RCLFYYKDEK ENSBTAP00000053803/1-1174 KRSHSMKRNP SAPVTKAGWL FKQASSGVKQ WNKRWFVLVD RCLFYYKDEK bmy_11865T0/1-1260 KRSHSMKRNP SAPVTKAGWL FKQASSGVKQ WNKRWFVLVD RCLFYYKDEK BACU001097/1-1696 KRSHSMKRNP SAPVTKAGWL FKQASSGVKQ WNKRWFVLVD RCLFYYKDEK 201 250 ENSTTRP00000008381/1-1068 EESVLGSIPL LSFRVAAVQP SDNISRKHTF KVTVCWVDEA GDSSTHCLSP ENSBTAP00000053803/1-1174 EESVLGSVPL LSFRVAAVQP SDNISRKHTF K--------- ---------- bmy_11865T0/1-1260 EESILGSIPL LSFRVAAVQP SDNISRKHTF K--------- ---------- BACU001097/1-1696 EESVLGSIPL LSFRVAAVQP SDNISRKHTF KVTVCWVNEA GDSSTHCLSP 251 300 ENSTTRP00000008381/1-1068 QAEHAGVRTY FFSAESPEEQ EAWIQAMGEA ARVQIPPAQK SA-PQAARHN ENSBTAP00000053803/1-1174 -AEHAGVRTY FFSAESPEEQ EAWIQAMGEA ARVQIPPAQK SAPPQASRHN bmy_11865T0/1-1260 -AEHAGVRTY FFSAESPEEQ EAWIQAMGEA ARVQIPPAQK SV-PQAARHN BACU001097/1-1696 QAEHAGVRTY FFSAESPEEQ EAWIQAMGEA ARVQIPPAQK SV-PQAARHN 301 350 ENSTTRP00000008381/1-1068 ---------- ---------- --HEKPDSEN IPPSKHHHQP PQNSLPKPEP ENSBTAP00000053803/1-1174 ---------- ---------- --HEKPDSEN IPPGKHHHQL PHNSVPKPEP bmy_11865T0/1-1260 FPPPELHAGL ESLTTSPLAS HSHEKPDSEN IPPSKXHHQP PQNSLPKPEP BACU001097/1-1696 ---------- ---------- --HEKPDSEN IPPSKHHHQP PQNSLPKPEP 351 400 ENSTTRP00000008381/1-1068 EAKTRGEGDG RGCEKVERRP ERPDVKSEPL VKANGVHAGP EPASDPGSPY ENSBTAP00000053803/1-1174 EAKTRGEGDG RGCEKAERRP ERPDAKSEPL VKSNGVHAGP EPASEPGSPF bmy_11865T0/1-1260 EAKTRGEGDG RGCEKVERRP ERPEVKSEPL VKANGVHAGP EPASDPGSPY BACU001097/1-1696 EAKTRGEGDG RGCEKVERRP ERPEVKSEPL VKANGVHAGP EPASDPGSPY 401 450 ENSTTRP00000008381/1-1068 PEGPRVPGGG ERPTQPNGWQ YSSPSRPGST AFPPQDSESG GQRRSFPPRA ENSBTAP00000053803/1-1174 PEGLRVPGGG ERPAQPNGWQ YSSPSRPGST AFPPQDSESG GHRRSFPPRT bmy_11865T0/1-1260 PEGPRVPGGG ERPTQPNGWQ YSSPSRPGST AFPPQDSESG GHRQSFPPRA BACU001097/1-1696 PEGPRVPGGG EQPTQPNGWQ YSSPSRPGST AFPPQDSESG GHRQSFPPRA 451 500 ENSTTRP00000008381/1-1068 NPDKIAQRKS SMNQLQQWVN LRRGVPPPED LRSPSRFYPV SRRVPEYYSP ENSBTAP00000053803/1-1174 NPDKIAQRKS SMNQLQQWVN LRRGIPPPED LRSPSRFYPV SRRVPEYYSP bmy_11865T0/1-1260 NPDKIAQRKS SMNQLQQWVN LRRGVPPPED LRSPSRFYPV SRRVPEYYSP BACU001097/1-1696 NPDKIAQRKS SMNQLQQWVN LRRGVPPPED L--------- -RRVPEYYSP 501 550 ENSTTRP00000008381/1-1068 YSSQYPDDYQ YYPPGVRPDS ICSMPAYDRI SPPWALEDKR HSFRNGGGPA ENSBTAP00000053803/1-1174 YSSQFPDDYQ YYPPGVRPDS ICSMPAYDRV SPPWALEDKR HSFRNGGGPA bmy_11865T0/1-1260 YSSQYPDDYQ YYPPGVRPDS ICSMPAYDRI SPPWALEDKR HSFRNGGGPA BACU001097/1-1696 YSSQYPDDYQ YYPPGVRPDS ICSMPAYDRI SPPWALEDKR HSFRNGGGPA 551 600 ENSTTRP00000008381/1-1068 FQLRAWKEPA SYGRQDGTTW IPSPSRQPVY YDELDAASGS LRRLSLQPRS ENSBTAP00000053803/1-1174 FQLREWKEPA GLGRPDGTVW IPSPSRQPVY YDELDAASGS LRRLSLQPRS bmy_11865T0/1-1260 FQLREWKEPA GYGRQDGTTW IPSPSRQPVY YDELDAASGS LRRLSLQPRS BACU001097/1-1696 FQLREWKEPA GYGRPDGTTW IPSPSRQPVY YDELDAASGS LRRLSLQPRS 601 650 ENSTTRP00000008381/1-1068 HSVPRSPSHG SYSRARIFSP IRSPSARFER LPPRSEDIYA DPAAYVMRRS ENSBTAP00000053803/1-1174 HSVPRSPGQG SYSRSRVYSP ARSPRAHFER LPPRSEDIYA DPAAYVMRRS bmy_11865T0/1-1260 HSVPRSPSQG SYSRARIYSP VRSPSARFER LPPRSEDIYA DPAAYVMRRS BACU001097/1-1696 HSVPRSPSQG SYSRARIYSP VRSPSARFQR LPPRSEDIYA DPAAYVMRRS 651 700 ENSTTRP00000008381/1-1068 ISSPK----- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ISSPKYDYLG DRRPVPAGLF PYNCPPSPTV HDKMDELLDL QLQRNLEYLD bmy_11865T0/1-1260 ISSPKYDYLG DRRPVPAGLF PYNYPPSPTV HDKM------ ---------- BACU001097/1-1696 ISSPKYDYLG DRRPVPAGLF PYNYPPSPTV HDKM------ ---------- 701 750 ENSTTRP00000008381/1-1068 ---------- ---------- ---------V PPYPEVFRDS LHTYKLNEQD ENSBTAP00000053803/1-1174 QQMSESEALI SVVNRMVESS SPSAQLFMQV PPYPEVFQDS LHTYKLNEQD bmy_11865T0/1-1260 --MSESETLI SMVNRMVENS SPRAQLFMQV PPYPEVFRDS LHTYKLNEQD BACU001097/1-1696 --MSESETLI SMVNRMVENS SPRAQLFMQV PPYPEVFRDS LHTYKLNEQD 751 800 ENSTTRP00000008381/1-1068 TDKLLGKLCE QNKVVREQER LVQQLRAEKE SLESALMGTH QELEMFGNQP ENSBTAP00000053803/1-1174 TDKLLGKLCE QNKAVREQER LVQQLRAEKE SLESALMGTH QELEMFGSQP bmy_11865T0/1-1260 TDKLLGKLCE QNKVVREQER LVQQLRAEKE SLESALMGTH QELEMFGSQP BACU001097/1-1696 TDKLLGKLCE QNKVVREQER LVQQLRAEKE SLESALMGTH QELEMFGSQP 801 850 ENSTTRP00000008381/1-1068 AYPEKLLHKK ESLQNQLIHI RVELSQATTA LSNSTVEYEG LEAEVSALHD ENSBTAP00000053803/1-1174 AYPEKLLHKK ESLQNQLINI RVELSQATTA LANSTMEYES LEAEVSALHD bmy_11865T0/1-1260 AYPEKLLHKK ESLQNQLIST RVELSQATTA LANSTMEYEG LEAEVSALHD BACU001097/1-1696 AYPEKLLHKK ESLQNQLINT RVELSQATTA LANSTMEYEG LEAEVSALHD 851 900 ENSTTRP00000008381/1-1068 ELWEQLSLDF QNEVLNRQIQ KEIWRIQDVM EGLRKNNPSR GTDTAKHR-- ENSBTAP00000053803/1-1174 ELWEQLSLDL QNEVLNRQIQ KEIWRIQDVM EGLRKNNPSR GTDTAKHRGG bmy_11865T0/1-1260 ELWEQLSLDL QNEVLNRQIQ KEIWRIQDVM EGLRKNNPSR GTDTAKHRGG BACU001097/1-1696 ELWEQLSLDL QNEVLNRQIQ KEIWRIQDVM EGLRKNNPSR GTDTAKHRGG 901 950 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- --------XX ENSBTAP00000053803/1-1174 LGPSGTYSSN SPASPLSSAS LTSPLSPFSL VSGSQGSPTK PGFSEEPGPP bmy_11865T0/1-1260 LGPSGTYSSN SPASPLSSTS LTSPLSPFSL VSGSQGSPTK PGSNEEPGPP BACU001097/1-1696 LGPSGTYSSN SPASPLSSTS LTSPLSPFSL VSGSQGSPTK PGSNEEPGPP 951 1000 ENSTTRP00000008381/1-1068 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXPMASY ENSBTAP00000053803/1-1174 RPPLPKAYVP LESPPTVPPL PSESRFWPHP NSPSWHRGGE TARGQPKASY bmy_11865T0/1-1260 RPPLPKAYVP LESPPTVPPL PSESRLWPYP NSPSWHRSGE TARGQPKASY BACU001097/1-1696 RPPLPKAYVP LESPPTVPPL PSESRLWPYP NSPSWHRSGE TARGQPKASY 1001 1050 ENSTTRP00000008381/1-1068 EQSKKDPHQT SPLDTTRDIS LVPTRQEVEA EKQAALNKVG IVPPRTKSPA ENSBTAP00000053803/1-1174 EQSKRDPQQT SPLDTSRDIS LVSTRQEVEA EKQAALNKVG IVPPRTKSPT bmy_11865T0/1-1260 EQSKKDPHQT SPLDTTRDIG LVPTRQEVEA EKQAALNKVG IVPPRTKSPT BACU001097/1-1696 EQSKKDPHQT SPLDTTRDIG LVPTRQEVEA EKQAALNKVG IVPPRTKSPT 1051 1100 ENSTTRP00000008381/1-1068 DEGVTPSGVV KRSASGLANG LSSR-ERPKS AVFPGEGKVK MSVEEQIDRM ENSBTAP00000053803/1-1174 DEEVTPSRVV RRSANGLTNG LSSRQERPKS AVFPCEGKAK MSVEEQMDRM bmy_11865T0/1-1260 DEEVTPSRVV RRSASGLTNG LSSRQERPKS AVFPGEGKVK MSVEEQIDRM BACU001097/1-1696 DEEVTPSRVV RRSASGLTNG LSSRQERPKS AVFPGEGKVK MSVEEQIDRM 1101 1150 ENSTTRP00000008381/1-1068 RRHQSGSMKD KRRSLQLPAS PAPDPSARPA YKVVRRHRSI HEVDISNLEA ENSBTAP00000053803/1-1174 RRRQSGSARD KRRSLQLPPS PAPDPGARPA YKVVRRHRSI HEVDISNLEA bmy_11865T0/1-1260 RRHQSGSMKD KRRSLQLPAS PAPEPSAQPA YKVVRRHRSI HEVDISNLEA BACU001097/1-1696 RRHQSGSMKD KRRSLQLPAS PAPDPSARPA YKVVRRHRSI HEVDICNLEA 1151 1200 ENSTTRP00000008381/1-1068 ALRAEEPGGQ AYETPREEIA RLRRMELEPQ HYDVDISKEL STPDKVLIPE ENSBTAP00000053803/1-1174 ALRAEEPGGQ AYETPREEIA RLRKMELEPQ HYDVDINKEL STPDKVLIPE bmy_11865T0/1-1260 ALRAEEPGGQ AYETPREEIA RLRKMELEPQ HYDVDISKEL STPDKVLIPE BACU001097/1-1696 ALRAEEPGGQ AYETPREEIA RLRKMELEPQ HYDVDISKEL STPDKVLIPE 1201 1250 ENSTTRP00000008381/1-1068 RYIDLEPDTP LSPEELKEKQ KKVERIKTLI AKSSMQNVVP IGEGDLVDVP ENSBTAP00000053803/1-1174 RYIDLEPDMP LSPEELKEKQ KKVERIKTLI AKSSMQNVVP VGEGDFVDVP bmy_11865T0/1-1260 RYIDLEPDTP LSPEELKEKQ KKVERIKTLI AKSSMQNVVP VGEGDLVDVP BACU001097/1-1696 RYIDLEPDTP LSPEELKEKQ RKVERIKTLI AKSSMQNVVP IGEGDLVDVP 1251 1300 ENSTTRP00000008381/1-1068 QDSESQLQEQ EKRIEISCAL ATEASRRGRM LS-------- ---------- ENSBTAP00000053803/1-1174 QDSESQLQEQ EKRIEISCAL ATEASRRGRM LS-------- ---------- bmy_11865T0/1-1260 QDSESQLQEQ EKRIEISCAL ATEASRRGRM LS-------- ---------- BACU001097/1-1696 QDSESQLQEQ EKRIEISCAL ATEASRRGRM LSEIGVGTTG FGIFFILFGM 1301 1350 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 FLYFDSVLLA FGNLLFLTGL SLIIGLRKTF SFFFQRHKLK GTSFFLGGVV 1351 1400 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 IVLLRWPLLG MLLETYGFFN LFKGFFSVAF GFLGNTSNIP FLSVVFTHPS 1401 1450 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 SVITSETPQD GAKARETLEN AVPMENPRAT GDRDVGRKAI FGWRVPGAPE 1451 1500 ENSTTRP00000008381/1-1068 --VQCATPSP PTSP------ ---------- ---------- ---------- ENSBTAP00000053803/1-1174 --VQCATPSP PTSP------ ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 GLACCWDPQP CLCHRRVLST DLKYRIFLKK MPSVWESLKE RGVDVARLGA 1501 1550 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 EWSQLTKTLS FGNRTSPVVL TNYLDTQYYG EIGIGTPPQT FKVIFDTGSA 1551 1600 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 NLWVPSTKCS PLYTACEIHS LYDSSESSSY VENGTEFTIH YGSGKVKGFL 1601 1650 ENSTTRP00000008381/1-1068 ---------- --ASPAPPAN PLSS------ ---------- ---------- ENSBTAP00000053803/1-1174 ---------- --ASPAPPAN PLPS------ ---------- ---------- bmy_11865T0/1-1260 ---------- --VQALAEAN AVKL------ ---------- ---------- BACU001097/1-1696 SQDLVTVGGI TVTQTFGEVT ELPLIPFMLA KFDGVLGMGF PAQAIEGVTP 1651 1700 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 VFDHILSQRV LKEDVFSVYY SRNSHLLGGE IVLGGSDPQY YQENFHYVSV 1701 1750 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 SKTGSWQIRM KGVSVRSTTL LCEEGCMVVV DTGASYISGP TSSLRLLMET 1751 1800 ENSTTRP00000008381/1-1068 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053803/1-1174 ---------- ---------- ---------- ---------- ---------- bmy_11865T0/1-1260 ---------- ---------- ---------- ---------- ---------- BACU001097/1-1696 LGAKELSTDE YVVNCNQVPT LPDISFHLGG RAYTLTSADY VLQDPYNSDD 1801 1850 ENSTTRP00000008381/1-1068 ---------- -ESPRG---- ---------- -------ADS SHAMRV ENSBTAP00000053803/1-1174 ---------- -EPPRG---- ---------- -------ADS SHVMRV bmy_11865T0/1-1260 ---------- ---------- ---------- -------HRA TF---- BACU001097/1-1696 LCTLALHGLD VPPPTGPVWV LGASFIRKFY TEFDRRNNRI GFALAR