KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:28 2014 Check: 00 .. Name: ENSTTRP00000010206/1-1891 Len: 1936 Check: 888 Weight: 1.00 Name: ENSBTAP00000053806/1-1882 Len: 1936 Check: 3694 Weight: 1.00 Name: BACU010348/1-1849 Len: 1936 Check: 8665 Weight: 1.00 Name: bmy_08430T0/1-1570 Len: 1936 Check: 8970 Weight: 1.00 // 1 50 ENSTTRP00000010206/1-1891 -------MGR GWGFLFPVAA ARIDAAIMSD TDSDEDSAGG GPFSLAGFLF ENSBTAP00000053806/1-1882 ---------- ---------G SAAAAAIMSD TDSDEDSAGG GPFSLAGFLF BACU010348/1-1849 ---------- ---------- -------MSD TDSDEDSAGG GPFSLTGFLF bmy_08430T0/1-1570 MDFYFRSVGR SWDLLSPVAA AGADAAIMSD TDSDEDSAGG GPFSLTGFLF 51 100 ENSTTRP00000010206/1-1891 GNINGAGQLE GESVLDDECK KRLAGLGALG LGSLITELTA NEELIGTDGA ENSBTAP00000053806/1-1882 GNINGAGQLE GESVLDDECK KHLAGLGALG LGSLITELTA NEELTGTDAA BACU010348/1-1849 GNINGAGQLE GESVLDDECK KHLAGLGALG LGSLITELTA NEEWIGTDGA bmy_08430T0/1-1570 GNINGAGQLE GESVLDDECK KHLAGLGALG LGSLITELTA NEELIGTDGA 101 150 ENSTTRP00000010206/1-1891 LVNDEGWIRS TEDAVDYSDI NEVAEDESRR YQQTMGTLQP LCHADYDEDD ENSBTAP00000053806/1-1882 LVNDEGWVRS TEDAVDYSDI NEVAEDESRR YQQTMGSLQP LCHADYDEDD BACU010348/1-1849 LVNDEGWIRS TEDAVDYSDI NEVAEDESRR YQQTMGTLQP LCHADYDEDD bmy_08430T0/1-1570 LVNDEGWIRS TEDAVDYSDI NEVAEDESRR YQQTMGTLQP LCHADYDEDD 151 200 ENSTTRP00000010206/1-1891 YDADCEDIDC KLMPPPPPPP GPMKKDKDQD AITGVSEDGE GIILPSIIAP ENSBTAP00000053806/1-1882 YDADCEDIDC KLMPPPPPPP GPVKKDKDQD AIAGVSEDGE GIILPSIIAP BACU010348/1-1849 YDADCEDIDC KLMPPPPPPP GPMKKDKDQD AITCVSEDGE GIILPSIIAP bmy_08430T0/1-1570 YDADCEDIDC KLMPPPPPPP GPMKKDKDQD AITGVSEDGE GIILPSIIAP 201 250 ENSTTRP00000010206/1-1891 SSLASEKVDF SSSSDSESEM GPQEATQAES EDGKLTLPLA GIMQHDATKL ENSBTAP00000053806/1-1882 SSLASEKVDF SSSSDSESEM GPQEAAQTES EDGKLTLPLA GIMQHDATKL BACU010348/1-1849 SSLASEKVDF SSSSDSESEM GPQEATQAES EDGKLTLPLA GIMQHDATKL bmy_08430T0/1-1570 SSLASEKVDF SSSSDSESEM GPQEATQAES EDGKLTLPLA GIMQHDATKL 251 300 ENSTTRP00000010206/1-1891 LPSVTELFPE FRPGKVLRFL RLFGPGKNVP SVWRSARRKR KKKHRELIQE ENSBTAP00000053806/1-1882 LPSVTELFPE FRPGKVLRFL RLFGPGKNVP SVWRSARRKR KKKHRELIQE BACU010348/1-1849 LLSVTELFPE FRPGKVLRFL RLFGPGKNVP SVWRSARRKR KKKHRELIQE bmy_08430T0/1-1570 LPSVTELFPE FRPGKVLRFL RLFGPGKNVP SVWRSARRKR KKKHRELIQE 301 350 ENSTTRP00000010206/1-1891 EQIQEVECSV ESEVNQKSLW NYDYAPPPPP EQCLSDDEIT MMAPVESKFS ENSBTAP00000053806/1-1882 EQIQETECSV ESEVNQKSLW NYDYAPPPPP EQCLSDDEIT MMAPVESKFS BACU010348/1-1849 EQIQEVECSV ESEVNQKSLW NYDYAPPPPP EQCLSDDEIT MMAPVESKFS bmy_08430T0/1-1570 EQIQEVECSV ESEVNQKSLW NYDYAPPPPP EQCLSDDEIT MMAPVESKFS 351 400 ENSTTRP00000010206/1-1891 QSTGDTDKVT DTKPRVAEWR YGPARLWYDM LGVPEDGSGF DYGFKLRKME ENSBTAP00000053806/1-1882 QSTGDTDKVT DTKPRVAEWR YGPARLWYDM LGVPEDGSGF DYGFKLRKME BACU010348/1-1849 QSTGDTDKVT DTKPRVAEWR YGPARLWYDM LGVPEDGSGF DYGFKLRKME bmy_08430T0/1-1570 QSTGDTDKVT DTKPRVAEWR YGPARLWYDM LGVPEDGSGF DYGFKLRKME 401 450 ENSTTRP00000010206/1-1891 LEPVMKCRMM EDFRKLEESS GTDLLADENF LMVTQLHWED DIIWDGEDVK ENSBTAP00000053806/1-1882 QEPVMKCRMA DEYRIPEESS GTDLLADENF LMVTQLHWED DIIWDGEDVK BACU010348/1-1849 LEPVMKCRMM EDFRKLEESS GTDLLADENF LMVTQLHWED DIIWDGEDVK bmy_08430T0/1-1570 LEPVMKCRMM EDFRKLEESS GTDLLADENF LMVTQLHWED DIIWDGEDVK 451 500 ENSTTRP00000010206/1-1891 HKGTKPQRAS LAGWLPSSMT RNAMAYNVQQ GFAATLDDDK PWYSIFPIDN ENSBTAP00000053806/1-1882 HKGTKPQRAS LAGWLPSSMT RNAMAYNVQQ GFAATLDDDK PWYSIFPIDN BACU010348/1-1849 HKGTKPQRAS LAGWLPSSMT RNAMAYNVQQ GFAATLDDDK PWYSIFPIDN bmy_08430T0/1-1570 HKGTKPQRAS LAGWLPSSMT RNAMAYNVQQ GFAATLDDDK PWYSIFPIDN 501 550 ENSTTRP00000010206/1-1891 EELVYGRWED NIIWDAQAMP RLLEPPVLTL DPNDENLILE IPDEKEEATS ENSBTAP00000053806/1-1882 EELVYGRWED NIIWDAQAMP RFLEPPILTL DPNDENLILE IPDEKEEATS BACU010348/1-1849 EELVYGRWED NIIWDAQAMP RFLEPPVLTL DPNDENLILE IPDEKEEATS bmy_08430T0/1-1570 EELVYGRWED NIIWDAQAMP RFLEPPVLTL DPNDENLILE IPDEKEEATS 551 600 ENSTTRP00000010206/1-1891 NSPSKESKKE SSLKKSRILL GKTGVIKEEP QQNMSQPEVK DPWNLSNDEY ENSBTAP00000053806/1-1882 NSPSKESKKE SSLKKSRILL GKTGVIKEEP QQNMSQPEVK DPWNLSNDEY BACU010348/1-1849 NSPSKESKKE TFLKKSRILL GKTGVIKEEP QQNMSQPEVK DPWNLSNDEY bmy_08430T0/1-1570 NSPSKESKKE SSLKKSRILL GKTGVIKEEP QQNMSQPEVK DPWNLSNDEY 601 650 ENSTTRP00000010206/1-1891 YYPKQQGLRG TFGGNIIQHS IPAVELRQPF FPTHMGPIKL RQFHRPPLKK ENSBTAP00000053806/1-1882 YYPKQQGLRG TFGGNIIQHS IPAVELRQPF FPTHMGPIKL RQFHRPPLKK BACU010348/1-1849 YYPKQQGLRG TFGGNIIQ-- ---------- ---------- ---------- bmy_08430T0/1-1570 YYPKQQGLRG TFGGNIIQHS IPAVELRQPF FPTHMGPIKL RQFHRPPLKK 651 700 ENSTTRP00000010206/1-1891 YSFGALSQPG PHSVQPLLKH IKKKAKMREQ ERQASGGGEM FFMRTPQDLT ENSBTAP00000053806/1-1882 YSFGALSQPG PHSVQPLLKH IKKKAKMREQ ERQASGGGEM FFMRTPQDLT BACU010348/1-1849 ---------- ---------- ------MREQ ERQASGGGEM FFMRTPQDLT bmy_08430T0/1-1570 YSFGALSQPG PHSVQPLLKH IKKKAKMREQ ERQASGGGEM FFMRTPQDLT 701 750 ENSTTRP00000010206/1-1891 GKDGDLILAE YSEENGPLMM QVGMATKIKN YYKRKPGKDP GAPDCKYGET ENSBTAP00000053806/1-1882 GKDGDLILAE YSEENGPLMM QVGMATKIKN YYKRKPGKDP GAPDCKYGET BACU010348/1-1849 GKDGDLILAE YSEENGPLMM QVGMATKIKN YYKRKPGKDP GAPDCKYGET bmy_08430T0/1-1570 GKDGDLILAE YSEENGPLMM QVGMATKIKN YYKRKPGKDP GAPDCKYGET 751 800 ENSTTRP00000010206/1-1891 VYCHTSPFLG SLHPGQLLQA FENNLFRAPI YLHKMPESDF LIIRTRQGYY ENSBTAP00000053806/1-1882 VYCHTSPFLG SLHPGQLLQA FENNLFRAPI YLHKMPETDF LIIRTRQGYY BACU010348/1-1849 VYCHTSPFLG SLHPGQLLQA FENNLFRAPI YLHKMPETDF LIIRTRQGYY bmy_08430T0/1-1570 VYCHTSPFLG SLHPGQLLQA FENNLFRAPI YLHKMPETDF LIIRTRQGYY 801 850 ENSTTRP00000010206/1-1891 IRELVDIFVV GQQCPLFEVP GPNSKRANTH IRDFLQVFIY RLFWKSKDRP ENSBTAP00000053806/1-1882 IRELVDIFVV GQQCPLFEVP GPNSKRANTH IRDFLQVFIY RLFWKSKDRP BACU010348/1-1849 IRELVDIFVV GQQCPLFEVP GPNSKRANTH IRDFLQVFIY RLFWKSKDRP bmy_08430T0/1-1570 IRELVDIFVV GQQCPLFEVP GPNSKRANTH IRDFLQVFIY RLFWKSKDRP 851 900 ENSTTRP00000010206/1-1891 RRIRMEDIKK AFPSHSESSI RKRLKLCADF KRTGMDSNWW VLKSDFRLPT ENSBTAP00000053806/1-1882 RRIRMEDIKK AFPSHSESSI RKRLKLCADF KRTGMDSNWW VLKSDFRLPT BACU010348/1-1849 RRIRMEDIKK AFPSHSESSF WKRLKLCADF KRTGMDSNWW VLKSDFRLPT bmy_08430T0/1-1570 RRIRMEDIKK AFPSHSESSI RKRLKLCADF KRTGMDSNWW VLKSDFRLPT 901 950 ENSTTRP00000010206/1-1891 EEEIRAMVSP EQCCAYYSMI AAEQRLKDAG YGEKSFFAPE EENEEDFQMK ENSBTAP00000053806/1-1882 EEEIRAMVSP EQCCAYYSMI AAEQRLKDAG YGEKSFFAPE EENEEDFQMK BACU010348/1-1849 EEEIRAMVSP EQCCAYYSMI AAEQRLKDAG YGEKSFFAPE EENEEDFQMK bmy_08430T0/1-1570 EEEIRAMVSP EQCCAYYSMI AAEQRLK--- ---------- ---------- 951 1000 ENSTTRP00000010206/1-1891 IDDEVRTAPW N-TRAFIAAM KGKCLLEVTG VADPTGCGEG FSYVKIPNKP ENSBTAP00000053806/1-1882 IDDEVRTAPW NTTRAFIAAM KGKCLLEVTG VADPTGCGEG FSYVKIPNKP BACU010348/1-1849 IDDEVRTAPW NTTRAFIAAM KGKCLLEVTG VADPTGCGEG FSYVKIPNKP bmy_08430T0/1-1570 ----VRTAPW NTTRAFIAAM KGKCLLEVTG VADPTGCGEG FSYVKIPNKP 1001 1050 ENSTTRP00000010206/1-1891 TQQKDDKEPQ PVKKTVTGTD ADLRRLSLKN AKQLLRKFGV PEEEIKKLSR ENSBTAP00000053806/1-1882 TQQKDDKEPQ PVKKTVTGTD ADLRRLSLKN AKQLLRKFGV PEEEIKKLSR BACU010348/1-1849 TQQKDDKEPQ PVKKTVTGTD ADLRRLSLKN AKQLLRKFGV PEEEIKKLSR bmy_08430T0/1-1570 TQQKDDKEPQ PVKKTVTGTD ADLRRLSLKN AKQLLRKFGV PEEEIKKLSR 1051 1100 ENSTTRP00000010206/1-1891 WEVIDVVRTM STEQARSGEG PMSKFARGSR FSVAEHQERY KEECXXXXXX ENSBTAP00000053806/1-1882 WEVIDVVRTM STEQARSGEG PMSKFARGSR FSVAEHQERY KEECQRIFDL BACU010348/1-1849 WEVIDVVRTM STEQARSGEG PMSKFARGSR FSVAEHQERY KEECQRIFDL bmy_08430T0/1-1570 WEVIDVVRTM STEQARSGEG PMSKFARGSR FSVAEHQERY KEECQRIFDL 1101 1150 ENSTTRP00000010206/1-1891 XXXVLSSTEI LSTDTDSSSA EDSDFEEMGK NIENMLQNKK TSSQLSRERE ENSBTAP00000053806/1-1882 QNKVLSSTEI LSTDTDSSSA EDSDFEEMGK NIENMLQNKK TSSQLSRERE BACU010348/1-1849 QNKVLSSTEI LSTDTDSSSA EDSDFEEMGK NIENMLQNKK TSSQLSRERE bmy_08430T0/1-1570 QNKVLSSTEI LSTDTDSSSA EDSDFEEMGK NIENMLQNKK TSSQLSRERE 1151 1200 ENSTTRP00000010206/1-1891 EQERKELQRM LLAAGSAASG NNHRDDDTAS VTSLNSSATG RCLKIYRTFR ENSBTAP00000053806/1-1882 EQERKELQRM ILAAGSAASG NNHRDDDTAS VTSLNSSATG RCLKIYRTFR BACU010348/1-1849 EQERKELQRM LLAAGSAAAG NNHRDDDTAS VTSLNSSATG RCLKIYRTFR bmy_08430T0/1-1570 EQERKELQRM LLAAGSAAAG NNHRDDDTAS VTSLNSSATG RCLKIYRTFR 1201 1250 ENSTTRP00000010206/1-1891 DEEGKEYVRC ETVRKPAVID AYVRIRTTKD EEFIRKFALF DEQHREEMRK ENSBTAP00000053806/1-1882 DEEGKEYVRC ETVRKPAVID AYVRIRTTKD EEFIRKFALF DEQHREEMRK BACU010348/1-1849 DEEGKEYVRC ETVRKPAVID AYVRIRTTKD EEFIRKFALF DEQHREEMRK bmy_08430T0/1-1570 DEEGKEYVRC ETVRKPAVID AYVRIRTTKD EEFIRKFALF DEQHREEMRK 1251 1300 ENSTTRP00000010206/1-1891 ERRRIQEQLR RLKRNQEKEK LKGPPEKKPK KMKERPDLKL KCGACGAIGH ENSBTAP00000053806/1-1882 ERRRIQEQLR RLKRNQEKEK LKGPPEKKPK KMKERPDLKL KCGACGAIGH BACU010348/1-1849 ERRRIQEQLR RLKRNQEKEK LKGPPEKKPK KMKERPDLKL KCGACGAIGH bmy_08430T0/1-1570 ERRRIQEQLR RLKRNQEKEK LKGPPEKKPK KMKERPDLKL KCGACGAIGH 1301 1350 ENSTTRP00000010206/1-1891 MRTNKFCPLY YQTNAPPSNP VAMTEEQEEE LEKTVIHNDN EELIKVEGTK ENSBTAP00000053806/1-1882 MRTNKFCPLY YQTNAPPSNP VAMTEEQEEE LEKTVIHNDN EELIKVEGTK BACU010348/1-1849 MRTNKFCPLY YQTNAPPSNP VAMTEEQEEE LEKTVIHNDN EELIKVEGTK bmy_08430T0/1-1570 MRTNKFCPLY YQTNAPPSNP VAMTEEQEEE LEKTVIHNDN EELIKVEGTK 1351 1400 ENSTTRP00000010206/1-1891 IVLGKQLIES ADEVRRKSLV LKFPKQQLPP KKKRRVGTTV HCDYLNRPHK ENSBTAP00000053806/1-1882 IVLGKQLIES ADEVRRKSLV LKFPKQQLPP KKKRRVGTTV HCDYLNRPHK BACU010348/1-1849 IVLGEQLIES ADEVRRKSLV LKFPKQQLPP KKKRRVGTTV HCDYLNRPHK bmy_08430T0/1-1570 IVLGKQLIES ADEVRRKSLV LKFPKQQLPP KKKRRVGTTV HCDYLNRPHK 1401 1450 ENSTTRP00000010206/1-1891 SIHRRRTDPM VTLSSILESI INDMRDLPNT YPFHTPVNAK VVKDYYKIIT ENSBTAP00000053806/1-1882 SIHRRRTDPM VTLSSILESI INDMRDLPNT YPFHTPVNAK VVKDYYKIIT BACU010348/1-1849 SIHRRRTDPM VTLSSILESI INDMRDLPNT YPFHTPVNAK VVKDYYKIIT bmy_08430T0/1-1570 SIHRRRTDPM VTLSSILESI INDMRDLPNT YPFHTPVNAK VVKDYYKIIT 1451 1500 ENSTTRP00000010206/1-1891 RPMDLQTLRE NVRKRLYPSR EEFREHLELI VKNSATYNGP KHSLTQISQS ENSBTAP00000053806/1-1882 RPMDLQTLRE NVRKRLYPSR EEFREHLELI VKNSATYNGP KHSLTQISQS BACU010348/1-1849 RPMDLQTLRE NVRKRLYPSR EEFREHLELI VKNSATYNGP KHSLTQISQS bmy_08430T0/1-1570 RPMDLQTLRE NVRKRLYPSR EEFREHLELI VKNSATYNGP KHSLTQISQS 1501 1550 ENSTTRP00000010206/1-1891 MLDLCDEKLK EKEDKLARLE KAINPLLDDD DQVAFSFILD NIVTQKMMAV ENSBTAP00000053806/1-1882 MLDLCDEKLK EKEDKLARLE KAINPLLDDD DQVAFSFILD NIVTQKMMAV BACU010348/1-1849 MLDLCDEKLK EKEDKLARLE KAINPLLDDD DQVAFSFILD NIVTQKMMAV bmy_08430T0/1-1570 MLDLCDEKLK EKEDKLARLE KAINPLLDDD DQVAFSFILD NIVTQKMMAV 1551 1600 ENSTTRP00000010206/1-1891 PDSWPFHHPV NKKFVPDYYK VIVSPMDLET IRKNISKHKY QSRESFLDDV ENSBTAP00000053806/1-1882 PDSWPFHHPV NKKFVPDYYK VIVSPMDLET IRKNISKHKY QSRESFLDDV BACU010348/1-1849 PDSWPFHHPV NKKFVPDYYK VIVSPMDLET IRKNISKHKY QSRESFLDDV bmy_08430T0/1-1570 PD-------- ---------- ---------- ---NISKHKY QSRESFLDDV 1601 1650 ENSTTRP00000010206/1-1891 NLILANSVKY N--GPESQYT KTAQEIVNVC YQTLTEYDEH LTQLEKDICT ENSBTAP00000053806/1-1882 NLILANSVKY NVIGPESQYT KTAQEIVNVC YQTLTEYDEH LTQLEKDICT BACU010348/1-1849 NLILANSVKY N--GPESQYT KTAQEIVNVC YQTLTEYDEH LTQLEKDICT bmy_08430T0/1-1570 NLILANSVKY N--G------ ---------- ---------- ---------- 1651 1700 ENSTTRP00000010206/1-1891 AKEAALEEAE LESLDPMTPG PYTPQPPDLY D-NTSLSMSR DASVFPDESN ENSBTAP00000053806/1-1882 AKEAALEEAE LESLDPMTPG PYTPQPPDLY DTNTSLSMSR DASVFQDESN BACU010348/1-1849 AKEAALEEAE LESLDPMTPG PYTYQPPDLY DTNTSLSMSR DASVFQDESN bmy_08430T0/1-1570 ---------- ---------G YFSF------ -----FSLSI NISIQH---- 1701 1750 ENSTTRP00000010206/1-1891 MSVLDIPTAT XXXXXXX--- ---------- ---------- ---------- ENSBTAP00000053806/1-1882 MSVLDIPTAT PEKQVTQ--- ---------- ---------- ---------- BACU010348/1-1849 MSVLDIPTAT PEKQVTQMHQ GRGRLGEEDS DVDIEGYDDE EEDGKPKTPA bmy_08430T0/1-1570 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSTTRP00000010206/1-1891 -EGEDADGDL ADEEEGTVQQ PQASVLYEDL LMSEGEDDEE DAGSDEEGDN ENSBTAP00000053806/1-1882 -EGEDADGDL ADEEEGTVQQ PQASVLYEDL LMSEGEDDEE DAGSDEEGDN BACU010348/1-1849 PEGEDADGDL ADEEEGTVQQ PQASVLYEDL LMSEGEDDEE DAGSDEEGDN bmy_08430T0/1-1570 ---------- ---------- ---------- ---------- ---------- 1801 1850 ENSTTRP00000010206/1-1891 PFSAIQLSES GSDSDVGSGG IRPKQPRMLQ ENTRMGMENE ESMMSYEGDG ENSBTAP00000053806/1-1882 PFSAIQLSES GSDSDVGSGG IRPKQPRMLQ ENTRMGMENE ESMMSYEGDG BACU010348/1-1849 PFSAIQLSES GSDSDVGSGG IRPKQPRMLQ ENTRMGMENE ESMMSYEGDG bmy_08430T0/1-1570 ---------- ---------- ---------- ---------- ---------- 1851 1900 ENSTTRP00000010206/1-1891 GEASHGLEDS NISYGSYEEP DPKSNTQDTS FSSIGGYEVS EEEEDEEEEE ENSBTAP00000053806/1-1882 GEASHGLEDS NISYGSYEEP DPKSNTQDTS FSSIGGYEVS EEEED-EEEE BACU010348/1-1849 GEASHGLEDS NISYGSYEEP DPKSNTQDTS FSSIGGYEVS EEEEDEEEEE bmy_08430T0/1-1570 ---------- ---------- ---------- ---------- ---------- 1901 1950 ENSTTRP00000010206/1-1891 QRSGPSVLSQ VHLSEDEEDS EDFHSIAGDS DLDSDE ENSBTAP00000053806/1-1882 QRSGPSVLSQ VQLSEDEEDS EDFHSIAGDS DLDSDE BACU010348/1-1849 QRSGPSVLSQ VHLSEDEEDS EDFHSIAGDS DLDSDE bmy_08430T0/1-1570 ---------- ---------- ---------- ------