KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:31 2014 Check: 00 .. Name: ENSTTRP00000007847/1-1005 Len: 1114 Check: 8724 Weight: 1.00 Name: ENSBTAP00000053814/1-1017 Len: 1114 Check: 2600 Weight: 1.00 Name: bmy_15879T0/1-725 Len: 1114 Check: 2975 Weight: 1.00 Name: BACU014571/1-1058 Len: 1114 Check: 5274 Weight: 1.00 // 1 50 ENSTTRP00000007847/1-1005 ---------- ----TGTRDA VP-------- ---------- ---------- ENSBTAP00000053814/1-1017 ---------- ----MGTRDD VP-------- ---------- ---------- bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 MAQGCWDQQA WGQQNRDRDF LPLKTPLKPG PSGPWMLQVE ALWMPEDRTH 51 100 ENSTTRP00000007847/1-1005 ---------- ---------- ------PAKF LAPLAVYCGS ISWTSAG--- ENSBTAP00000053814/1-1017 ---------- ---------- ------PAKV PAPVAMYGGS VPQSSAGPLA bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 GPESSCSLQT TSHVPSPPGA WVPVTLSPQV LAPVAVNCGS IPWTSAGPRT 101 150 ENSTTRP00000007847/1-1005 LPGGSSDSS- QTFGKASLRP VLSVLLEKPS QLLSGCGEPG SLKLGASLKG ENSBTAP00000053814/1-1017 LPGGSSDSSL ETFGEASLQL APSALLEKPS QLLSGRGDPG SLKLDAPLKG bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 LPGGSSDSSP KTFGKASLQP VLSVLLEKPS QLLSGRGDPG SLKLEASLEG 151 200 ENSTTRP00000007847/1-1005 WQARNGHPRK PGALSLGPQP LVPLPLLESE ANRVARDTTQ IKDKLKTRRF ENSBTAP00000053814/1-1017 WQARNGHPRN LAALSLGPHP LVPLPSLKSE ANSVAQDTTQ IKDKLKKRRL bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 WQARNGHPRK LGALSLGPQP LVPLPALESE ANRVARDATQ IKDTLKTRRL 201 250 ENSTTRP00000007847/1-1005 LEGLAASPRA SLDPGGAPKG VPLRTAIPRA ASQRLLRVPR PMTPIQSLPT ENSBTAP00000053814/1-1017 SEGLAASSRA SLDPGGGPKG VPLKTAIPRA TSQRLLRVSR PMPPIQSIPT bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 VEGLAASPRA SLDPGGAPKG IPLRTAVPRA ASQRLLRVPR PMPPVQSNPT 251 300 ENSTTRP00000007847/1-1005 TPEASGTKDK GLDPPRSHQG PQELRPGAQE AQVSQQYLHC SDEKMHKSLA ENSBTAP00000053814/1-1017 TPEASIAKEK GLDPPISRQG PQELRPGAQE VQISQQYLHC NDEKMHKSLG bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 TPEAGGAKDK GLHPPRSHQG PQELRPRAQE VQVSQQYPHC SDEKTHKSQG 301 350 ENSTTRP00000007847/1-1005 GIVIPPFPKD KVPARTSSCT PGSLPSLLPP GQDILMGLRP ATTRLDEHQG ENSBTAP00000053814/1-1017 GIVIPPIPKA NVPTGTSR-T PGSLPSLLPL GQDILTGLRP PTTRLVWEHG bmy_15879T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU014571/1-1058 GIVIPPIPKD RVPAGTSSCT PGSLPSLLPP GQDVLTGLRP ATTRLVRESG 351 400 ENSTTRP00000007847/1-1005 K--------- PKPLVLSVRD RSAAPEKPAL PSSQSAPILT AFSFSHAKET ENSBTAP00000053814/1-1017 PWEKTPRSLE PKPLIPPVRD RSAAPEKPAL PLSQSAPMLT SFSFSHAKEA bmy_15879T0/1-725 ---------- PKPLVLPVRD RSAXPEKPAL PSSQSAPTLT AFSFSHAKET BACU014571/1-1058 PREKTPRSLE PKHLVLPVRD RSAAPEKPAL PSSQSAPTLT AFSFSHAKEA 401 450 ENSTTRP00000007847/1-1005 QPLLKEEDQK ESGTKIQVTV ARSAQEKMQL KQMKEMELVQ RVKEPERERG ENSBTAP00000053814/1-1017 HPLLKEEDQK ESETKIQVTI ARSAQEKMKL KQMKEMELFR RAKEP--ERD bmy_15879T0/1-725 QPLLKEEDQK ESGTK--VTI ARSAQEKMRL KQMKEMELVX RVKEPERERE BACU014571/1-1058 QPLLKEEDQK ESSTK--VTI ARSAQEKMRL KQTKEMELVR RVKEP--ERE 451 500 ENSTTRP00000007847/1-1005 RELASQSLGS RRTLMKEGLL TLRGSGTLSV PTGLSSPRRN NIGVILRKRA ENSBTAP00000053814/1-1017 RELTSQSLGS RRTLMKEGLL PLRGSGTLSV PTGLSSPRRN NLGVILRKRA bmy_15879T0/1-725 RELASQSLGS RRTLMKEGLL TLRGSGTLSV PTGLSSPCRN NIGVILKKRA BACU014571/1-1058 RELASQSLDS RRTLMKEGLL TLRGSGTLSV PTGLSSPCRN NIGVILKKQA 501 550 ENSTTRP00000007847/1-1005 DRASLPSILV -KQELSFACR AS-------- ---------- -------AHS ENSBTAP00000053814/1-1017 SRASLPSIPI SKKEPSFARH AS-------- ---------- -------AQS bmy_15879T0/1-725 NRASLPSIPV SKQELSFARH ASGGLGAVQV AGPLGNTRLL LSXSVSAAHS BACU014571/1-1058 NQASLPSIPV SKQELSFARH AS-------- ---------- -------AHS 551 600 ENSTTRP00000007847/1-1005 LPAVLTLGSP EW-EEEEETD LRAFKELRPF SNAELGLVDA LQCLDRSDWQ ENSBTAP00000053814/1-1017 LPAVLTLGSP EWEEEEEETD LRAFRELRPF SNPELGLVDA LQCLESSDWQ bmy_15879T0/1-725 LPAVLTLGSP EWEEEEEETD LRAFKELRPF SNPELGLVDA LQCLDRSDWQ BACU014571/1-1058 LPVVLTLGSP EWEEEEEETD LRAFKELRPF SNPELGLVDA LQCLGRSDWQ 601 650 ENSTTRP00000007847/1-1005 MKEKGLVSIQ RLAACHSEVL AGRLHDVSLA VTGEXXXXXX XXXXXXXXXX ENSBTAP00000053814/1-1017 MKERGLVSIQ RLAACHSEVL TGRLHDVSLA VTGEVTNLRS KVSRLAISTL bmy_15879T0/1-725 MKEKGLVSIQ RLAACHSEVL AGRLHDVSLA VTGEVTNLRS KVSRLAISTL BACU014571/1-1058 MKEKGLVSIQ RLAACHPEVL AGRLHEVSLA VTGEVTNLRS KVSRLAISTL 651 700 ENSTTRP00000007847/1-1005 XXXXXXXXXX XXXXXXXXXX SCLLQKMGNT SKFIQRAASR SLGAMVQHVT ENSBTAP00000053814/1-1017 GDLFRALKKN MDQEAEEITR -CLLQKMANT SGFIQRAANR SLGAMVEHVT bmy_15879T0/1-725 GELFRALKKN MDQEAEEIAR -CLLQKMGNT SKFIQRAASR SLGAMVAHVT BACU014571/1-1058 GELFRALKKN MDQEAEEIAR -CLLQKMGNT SKFIQRAASR SLGAMVEHVT 701 750 ENSTTRP00000007847/1-1005 PTCSLVALTS AGIYHRNPLV WKCTAEHLSV VREQMGAERL LSGTRESTDM ENSBTAP00000053814/1-1017 PARSLVALTS VGIYHRNPLV RKCTAEHLSV VLEQVGAEKL LSGTRDSTDM bmy_15879T0/1-725 PTRSLVALTS AGIYHRNPLV RKCTAEHLSV VLEQIGAEKL LSGTRESTDM BACU014571/1-1058 PTRSLVALTS AGIYHRNPLV RKCTAEHLSV VLEQIGTEKL LSGTRESTDM 751 800 ENSTTRP00000007847/1-1005 LVHNLVRLAP DSNQDARFYG RKMVNILMSN TRFDAFLKQS LPSHDLQKVM ENSBTAP00000053814/1-1017 LVHNLVRLAQ DSNQDTRFYG RKMVNILMSN TKFDAFLKQS LPSHDLQKVM bmy_15879T0/1-725 LVHNLVRLAQ DSNQDTRFYG RKMVNILMSN TRFDAFLKQS LPSHNLQKVM BACU014571/1-1058 LVHNLVRLAQ DSNQDTRFYG RKMVNILMSN TRFDAFLKQS LPSHDLQKVM 801 850 ENSTTRP00000007847/1-1005 TAIKQWGIED GDELPSAKGR KVSRSL-VCE NGLPGEDGLS SSGPQLAGLR ENSBTAP00000053814/1-1017 TAIKQRGIED GDELPSAKDR KLSRSLVVYE NGLPGQDGLC SNGPRLVGLR bmy_15879T0/1-725 TAIKQWGIED GDELPSAKGR KVSRSLVVCE NGLPGKDGLS SSGPRLAGLR BACU014571/1-1058 TAIKQWGIED GDELPSAKGR KVSRSLVVCE NGLPGEDGLS SSGPRLAGLR 851 900 ENSTTRP00000007847/1-1005 SSTRGALEMA EQLRELTRLL EAEEYQSRME GVGRLLEHCK AKPELVTANL ENSBTAP00000053814/1-1017 SSMRGGLEMV EQLRELTRLL EAKEYQSRME GVGQLIEHCR AKPELITANL bmy_15879T0/1-725 SSMRGGLEMV EQLRELTRLL EAKEYQSRME GVGRLLEHCK AKPELITANL BACU014571/1-1058 SSMRDGLEMV EQLRELTRLL EAKEYQSRME GVGRLLEHCK AKPELITANM 901 950 ENSTTRP00000007847/1-1005 VRVFDAFTLR LQDSNKKVNQ WALESLSRMM PLLRESLQPV LLSIIIAVAD ENSBTAP00000053814/1-1017 VQVFDAFTPR LQDSNKKVNQ WALESLAKMI PLLRESLQPM LLSIIIAVAD bmy_15879T0/1-725 VQVFDAFTPR LQDSNKKVNQ WALESLSKMM PLLRESLQPM LLSIIIAVAD BACU014571/1-1058 VQVFDAFTPR LQDSNKKVNQ WALESLSKMV PLLRESLQPM LLSIIIAVAD 951 1000 ENSTTRP00000007847/1-1005 NLNSKNSGIY TAAATALDVV IESLDTLGLL QAFAGRVRFL SGRAVLDVTE ENSBTAP00000053814/1-1017 NLNSKNAGIY AAAATALDAM VESLDNLGLL QVFAGRVRFL SGRAMLDVTE bmy_15879T0/1-725 NLNSKNAGIY TAAATALDVM IESLDNLGLL QAFAGRVRFL SGRAVLDVTE BACU014571/1-1058 NLNSKNAGIY TAAVTALDVM IESLDILGLL QAFAGRVRFL SGRAVIDVTE 1001 1050 ENSTTRP00000007847/1-1005 RLSVLVASVY PRKPQAVECH VLPVLWYFLN NMFGNGILPG RGGSVCTAVC ENSBTAP00000053814/1-1017 RLAVMVASVY PRKPQAVERH VLPVLWYFLN SMMGNGVLPG HSGNVRRAVC bmy_15879T0/1-725 RLSVLVASVY PRKPQAVERH VLPVLWYFLN NMIGNGILPG RGGNVRTAVC BACU014571/1-1058 RLSVLVASVY PRKPQAVERH VLPVLWYFLN NMIGNGILPG RGGNVRKAVC 1051 1100 ENSTTRP00000007847/1-1005 RLCRSLQRQM GSWLQDLAAS QPKQVLKTLQ ELLDPESLDS PKVTDGGRAP ENSBTAP00000053814/1-1017 RLCRSLQEQM GSRLQDLAAG QPKQVLKMLQ ELLDTESEEA PRSSTGGKAS bmy_15879T0/1-725 RLCRSLQGQM GSRLQALAAS QPKQVLKTLQ ELLDPESL-- ---------- BACU014571/1-1058 RLCRSLQGQM GSRLQALAAS QPKQVLKTLQ GLLDSESL-- ---------- 1101 1150 ENSTTRP00000007847/1-1005 DSKTTGSSRP FHLD ENSBTAP00000053814/1-1017 NSRTTGSSGP FLLG bmy_15879T0/1-725 ---------- ---- BACU014571/1-1058 ---------- ----