KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:35 2014 Check: 00 .. Name: ENSP00000005226/1-899 Len: 1028 Check: 9159 Weight: 1.00 Name: ENSBTAP00000053819/1-883 Len: 1028 Check: 4199 Weight: 1.00 Name: ENSTTRP00000014306/1-895 Len: 1028 Check: 9994 Weight: 1.00 Name: bmy_03610T0/1-919 Len: 1028 Check: 1690 Weight: 1.00 Name: BACU005621/1-950 Len: 1028 Check: 2185 Weight: 1.00 // 1 50 ENSP00000005226/1-899 ---------- MDRKVAREF- RHKVDFLIEN DAEKDYLYDV LRMYHQTMDV ENSBTAP00000053819/1-883 ---------- --KAVIRHYS HHQVDFLIEN DAEKDYLYDV LRMYHQTMDV ENSTTRP00000014306/1-895 ---------- MDRKVAREF- RHKVDFLIEN DAEKDYLYDV LRMYHQTMDV bmy_03610T0/1-919 MCYLSEWPKS FLKAVIRHYS HHQVDFLIEN DAEKDYLYDV LRMYHQTMDV BACU005621/1-950 ---------- MDRKVAREF- RHKVDFLIEN DAEKDYLYDV LRMYHQTMDV 51 100 ENSP00000005226/1-899 AVLVGDLKLV INEPSRLPLF DAIRPLIPLK HQVEYDQLTP RRSRKLKEVR ENSBTAP00000053819/1-883 AVLVGDLKLV INEPSRLPLF DAIRPLIPLK HQVEYDQLTP RRSRKLKEVR ENSTTRP00000014306/1-895 AVLVGDLKLV INEPSRLPLF DAIRPLIPLK HQVEYDQLTP RRSRKLKEVR bmy_03610T0/1-919 AVLVGDLKLV INEPSRLPLF DAIRPLIPLK HQVEYDQLTP RRSRKLKEVR BACU005621/1-950 AVLVGDLKLV INEPSRLPLF DAIRPLIPLK HQVEYDQLTP RRSRKLKEVR 101 150 ENSP00000005226/1-899 LDRLHPEGLG LSVRGGLEFG CGLFISHLIK GGQADSVGLQ VGDEIVRING ENSBTAP00000053819/1-883 LDRLHPEGLG LSVRGGLEFG CGLFISHLIK DGQADSVGLQ VGDEIVRING ENSTTRP00000014306/1-895 LDRLHPEGLG LSVRGGLEFG CGLFISHLIK GGQADSVGLQ VGDEIVRING bmy_03610T0/1-919 LDRLHPEGLG LSVRGGLEFG CGLFISHLIK GGQADSVGLQ VGDEIVRING BACU005621/1-950 LDRLHPEGLG LSVRGGLEFG CGLFISHLIK GGQADSVGLQ VGDEIVRING 151 200 ENSP00000005226/1-899 YSISSCTHEE VINLIRTKKT VSIKVRHIGL IPVKSSPDEP LTWQYVDQFV ENSBTAP00000053819/1-883 YSISSCTHEE VINLIRTKKT VSIKVRHIGL IPVKSSPDEP LKWQYVDQFV ENSTTRP00000014306/1-895 YSIASCTHEE VINLIRTKKT VSIKVRHIGL IPVKSSPDEP LKWQYVDQFV bmy_03610T0/1-919 YSISSCTHEE VINLIRTKKT VSIKVRHIGL IPVKSSPDEP LKWQYVDQFV BACU005621/1-950 YSISSCTHEE VINLIRTKKT VSIKVRHIGL IPVKSSPDEP LKWQYVDQFV 201 250 ENSP00000005226/1-899 SESGGVRGSL GSPGNRENKE KKVFISLVGS RGLGCSISSG PIQKPGIFIS ENSBTAP00000053819/1-883 SESGGGRSSL GSPGSQENKE KKVFISLVGS RGLGCSISSG PIQKPGIFIS ENSTTRP00000014306/1-895 SESGGGQTSL GSPSSQENKE KKVFISLVGS RGLGCSISSG PIQKPGIFIS bmy_03610T0/1-919 SESGGGRTSL GYPSSQENKE KKVFISLVGS RGLGCSISSG PIQKPGIFIS BACU005621/1-950 SESGGGRTSL GSPSSQENKE KKVFISLVGS RGLGCSISSG PIQKPGIFIS 251 300 ENSP00000005226/1-899 HVKPGSLSAE VGLEIGDQIV EVNGVDFSNL DHKEAVNVLK SSRSLTISIV ENSBTAP00000053819/1-883 HVKPGSLSAE VGLETGDQIV EVNGIDFSNL DHKEAVNVLK SSRSLTISIV ENSTTRP00000014306/1-895 HVKPGSLSAE VGLEPGDQIV EVNGIDFSNL DHKEAVNVLK SSRSLTISIV bmy_03610T0/1-919 HVKPGSLSAE VGLETGDQIV EVNGIDFSNL DHKEAVNVLK SSRSLTISIV BACU005621/1-950 HVKPGSLSAE VGLETGDQIV EVNGIDFSNL DHKEAVNVLK SSRSLTISIV 301 350 ENSP00000005226/1-899 AAAGRELFMT DRERLAEARQ RELQRQELLM QKRLAMESNK ILQEQQEMER ENSBTAP00000053819/1-883 AGAGRELFMT DQERLAEVRQ RELQRQELLM QKRLAMESNK ILQEQQEMER ENSTTRP00000014306/1-895 AGAGRELFMT DRERLEEFRQ RELQRQELLM QKRLAMESNK ILREQQEMER bmy_03610T0/1-919 AGAGRELFMT DRERLAEVRQ RELQRQELLM QKRLAMESNK ILQEQQEMER BACU005621/1-950 AGAGRELFMT DRERLAEVRQ RELQRQELLM QKRLAMESNK ILQEQQEMER 351 400 ENSP00000005226/1-899 QRRKEIAQKA AEENERYRKE MEQIVEEEEK FKKQWEEDWG SKEQLLLPKT ENSBTAP00000053819/1-883 QRKKEIAQKA AEENERYRKE MEQIVEEEEK FRKQWEEDWG SKEQLRSPKT ENSTTRP00000014306/1-895 QRKKEIAQKA AEENERYRKE MEQIVEEEEK -KKQWEEDWG SKEQLLSSKT bmy_03610T0/1-919 QRKKEIAQKA AEENERYRKE MEQIVEEEEK FKKQWEEDWG SKEQLLSPKT BACU005621/1-950 QRKKEIAQKA AEENERYRKE MEQIVEEEEK FKKQWEEDWG SKEQLLSPKT 401 450 ENSP00000005226/1-899 ITAEVHPVPL RKPK------ ---------- ---------- ---------- ENSBTAP00000053819/1-883 ITAEVHPIPL RKPK------ ---------- ---------- ---------- ENSTTRP00000014306/1-895 ITTELHPVPL RKPK------ ---------- ---------- ---------- bmy_03610T0/1-919 ITAEVHPVPL RKPKYDLGVD PEFDPADDLD GGTEKQGE-- ---------- BACU005621/1-950 ITAEVHPVPL RKPKYELGVD PEFDPADDLD GGTEKQGEQA DTQAPFCFGL 451 500 ENSP00000005226/1-899 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053819/1-883 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014306/1-895 ---------- ---------- ---------- ---------- ---------- bmy_03610T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU005621/1-950 FLGWRNLTPV RRGLVQWGFV FADCGCDGEK LILLQGAFSL TLALTSEASV 501 550 ENSP00000005226/1-899 ---------- ---------- ---------- SFGWFYRYDG KFPTIRKKGK ENSBTAP00000053819/1-883 ---------- ---------- ---------- SFGWFYRYDG KFPTIRKKGK ENSTTRP00000014306/1-895 ---------- ---------- ---------- SFGWFYRYDG KFPTIRKKGK bmy_03610T0/1-919 ---------- ---------- ---------- ---------- ------QKGK BACU005621/1-950 LGEAADSGPG PGNRALSQVV LGLLYNQVRP AFGWFYRYDG KFPTIRKKGK 551 600 ENSP00000005226/1-899 DKKKAKYGSL QDLRKNKKEL EFEQKLYKEK EEMLEKEKQL KINRLAQEVS ENSBTAP00000053819/1-883 DKKKAKYDSL QELRKNKKEL EFEQKLYKEK EEMLEKEKQL KINRLAQEVS ENSTTRP00000014306/1-895 DKKKAKYDSL QELRKNKKEL EFEQKLYKEK EEMLEKEKQL KINRLAQEVS bmy_03610T0/1-919 DKKKAKYDSL QELRKNKKEL EFEQKLYKEK EEMLEKEKQL KINRLAQEVS BACU005621/1-950 DKKKAKYDSL QELRKNKKEL EFEQKLYKEK EEMLEKEKQL KINRLAQEVS 601 650 ENSP00000005226/1-899 ETEREDLEES EKIQYWVERL CQTRLEQISS ADNEISEMTT GPPPPPPSVS ENSBTAP00000053819/1-883 ETEREDLEES EKIQYWVERL CQTRLEQISS ADNEISEMTT GPPPPPPSVS ENSTTRP00000014306/1-895 ETEREDLEES EKIQYWVERL CQTRLEQISS ADTEISEMTT GLPPSLPSVS bmy_03610T0/1-919 ETEREDLEES EKIQYWVERL CQTRLEQISS ADTEISEMTT GPPPPPPSVS BACU005621/1-950 ETEREDLEES EKIQYWVERL CQTRLEQISS ADTEISEMTT GPPPPPPSVS 651 700 ENSP00000005226/1-899 PLAPPLRRFA GGLHLHTTDL DDIPLDMFYY PPKTPSALPV MPHPPPSNPP ENSBTAP00000053819/1-883 PLAPPLRRFA GGLHLHTTDL DDIPLDMFYY PPKSASALPV MPHPPPSNPP ENSTTRP00000014306/1-895 PLAPPLRRFA GGLHLHTTDL DDIPLDMFHY PPKTASALPV MPHPPPCNPP bmy_03610T0/1-919 PLAPPLRRFA GGLHLHTTDL DDIPLDMFYY PPKTASALPV MPHPPASNPP BACU005621/1-950 PLAPPLRRFA GGLHLHTTDL DDIPLDMFYY PPKTASALPV VPHPPASNPP 701 750 ENSP00000005226/1-899 HKVPAPPVLP LSGHVSASSS PWVQRTPPPI PIPPPPSVPT QDLTPTRPLP ENSBTAP00000053819/1-883 SKVSAPPVLL SSGRLSASSS PWVQRTPPPI PIPPPPSIPT QDLTPTRPLP ENSTTRP00000014306/1-895 PKVPAPPVLP SSGHVSASSS PWVQRTPPPI PIPPPPSIPT QDLTPTRPLP bmy_03610T0/1-919 PKVPAPPVLP SSGRLNASSS PWVQRTPPPI PIPPPPSIPT QDLTPTRPLP BACU005621/1-950 PKVPAPPVLP SSGHLSASSS PWVQRTPPPI PIPPPPSIPT QDLTPTRPLP 751 800 ENSP00000005226/1-899 SALEEALSNH PFRTGDTGNP VEDWEAKNHS GKPTNSPVPE QSFPPTPKTF ENSBTAP00000053819/1-883 SALEEALGNH PLRTGETGNP AEDREAKNHG GKPANSPVPD RSFPPTQKTF ENSTTRP00000014306/1-895 SALEEALGNH PFRAGETGNP AEDWEAKNHS GKPASSPVPE RSFPPTPKTF bmy_03610T0/1-919 SALEEALGNH PFRAGETGNS AEDWEAKNHS GKLANSPVPE RSFPPTAKTF BACU005621/1-950 SALEEALGNH PFRAGETGNP AEDWEAKNHS GKPANSPVPE RSFPPTAKTF 801 850 ENSP00000005226/1-899 CPSPQPPRGP GVSTISKPVM VHQEPNFIYR PAVKSEVLPQ EMLKRMVVYQ ENSBTAP00000053819/1-883 CPSPQPPRGP GVSTISKPVM VHQESNYVYR PPVKSEVLPQ EMLKRMVVYQ ENSTTRP00000014306/1-895 CPSPQPPRGP GVSTISKPVM VHQEPNFVYR PTVKSEVLXX XXXXXXXXXX bmy_03610T0/1-919 CPSPQPPRGP GVSTISKPVM VHQESNFIYR PAVKSEVLPQ EMLKRMVVYQ BACU005621/1-950 CPSPQPPRGP GVSTISKPVM VHQESNFIYR PAVKSEVL-- ---------- 851 900 ENSP00000005226/1-899 TAFRQDFRKY EEGFDPYSMF TPEQIMGKDV RLLRIKKEGS LDLALEGGVD ENSBTAP00000053819/1-883 TAFRQDFRKY EEGFDPYSMF TPEQIMGKDV RLLRVKKEGA LDLALEGGVD ENSTTRP00000014306/1-895 XXXXXDFRKY EEGFDPYSMF TPEQIVGKDV RLLRIKKEGA LDLALEGGVD bmy_03610T0/1-919 TAFRQDFRKY EESFDPYSMF TPEQIVGKDV RLLRIKKEGA LDLALEGGVD BACU005621/1-950 -----DFRKY EEGFDPYSMF TPEQIVGKDV RLLRIKKEGA LDLALEGGVD 901 950 ENSP00000005226/1-899 SPIGKVVVSA VYERGAAERH GGIVKGDEIM AINGKIVTDY TLAEAEAALQ ENSBTAP00000053819/1-883 SPIGKVVVSA VYEGGAAERH GGIVKGDEIM AINGKIVTDY TLAEAEAALQ ENSTTRP00000014306/1-895 SPIGKVVVSA VYEGGAAERH GGIVKGDEVM AINGKIVTDY TLAEAEAALQ bmy_03610T0/1-919 SPIGKVVVSA VYEGGAAERH GGIVKGDEVM AINGKIVTDY TLAEAEAALQ BACU005621/1-950 SPIGKVVISA VYEGGAAERH GGIVKGDEVM AINGKIVTDY TLAEAEAALQ 951 1000 ENSP00000005226/1-899 KAWNQGGDWI DLVVAVCPPK EYDDELA-SL PSSVAESPQP VRKLLEDRA- ENSBTAP00000053819/1-883 KAWNQ-GDWI DLVVAVCPPK EYDDELL-SC PNSSFHVEN- -RPSKQRNCA ENSTTRP00000014306/1-895 KAWNQ-GDWI DLVVAVCPPK EYDDELS-SL PSSAAESPP- -VKLLGDNA- bmy_03610T0/1-919 KAWNQ-GDWI DLVIAVCPPK EYDDELSEEK PNPPVEASEL WTHPPGHHAW BACU005621/1-950 KAWNQ-GDWI DLVIAVCPPK EYDDELT--- ---------- ---------- 1001 1050 ENSP00000005226/1-899 AVHRHGFLLQ LEPTDLLLKS KRGNQIHR ENSBTAP00000053819/1-883 PVLRHGFLLQ PEPSS----- -------- ENSTTRP00000014306/1-895 PMLRHGFLLQ LEPVDLLLKF RRNQTHPE bmy_03610T0/1-919 NQLSHRSLQA PGNPQPAPRD CRLPLALK BACU005621/1-950 ------FF-- ---------- --------