KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:37 2014 Check: 00 .. Name: bmy_01386T0/1-427 Len: 510 Check: 8400 Weight: 1.00 Name: ENSTTRP00000006423/1-494 Len: 510 Check: 7731 Weight: 1.00 Name: BACU017439/1-353 Len: 510 Check: 191 Weight: 1.00 Name: ENSP00000365351/1-494 Len: 510 Check: 7324 Weight: 1.00 Name: ENSBTAP00000053831/1-392 Len: 510 Check: 4275 Weight: 1.00 // 1 50 bmy_01386T0/1-427 ---------M ALSSAIRTEN IWQFEDAVAH GV-ALAKVKC TGEYDFTDAM ENSTTRP00000006423/1-494 MRPAGFRNFL LLASSLLFVG LSAVPQSFSP SLXXXXXXXX XXXXXXXXXX BACU017439/1-353 ---------- ---------- ---------- ---------- ---------- ENSP00000365351/1-494 MRPPGFRNFL LLASSLLFAG LSAVPQSFSP SLRSWPGAAC RLSRAESERR ENSBTAP00000053831/1-392 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_01386T0/1-427 CSGMMEEGEE VEKDKGEEES EGISVKISDE KTRRAGSWRN GGLKDSIVWS ENSTTRP00000006423/1-494 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU017439/1-353 ---------- ---------- ---------- ---------- ---------- ENSP00000365351/1-494 CRAPGQPPGA ALCHGRGRCD CGVCICHVTE PGMFFGPLCE CHEWVCETYD ENSBTAP00000053831/1-392 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_01386T0/1-427 ----NSHGVC DCGKCRCDGG WSGDACQYPK TCDLTKKQSN QMCKNSQDII ENSTTRP00000006423/1-494 XXXXXXHGTC DCGKCRCDGG WSGDACQYPK TCDLTKKQSN QMCKNSQDII BACU017439/1-353 ---------- ---------- ---------- ---------- -MCKNSQDII ENSP00000365351/1-494 GSTCAGHGKC DCGKCKCDQG WYGDACQYPT NCDLTKKKSN QMCKNSQDII ENSBTAP00000053831/1-392 ----SGHGKC DCGRCKCDEG WFGDACQYPT NCDLTKKKSN QMCKNSQDII 151 200 bmy_01386T0/1-427 CSNADQGCFE FIPWHQIEPN FSNLMGVSDA LDVKAIAEYS D--------- ENSTTRP00000006423/1-494 CSNAGTCHCG RCKCDNSDGN GLVYGKFCEC DDRECIDDET EEICG--GHG BACU017439/1-353 CSNAGTCHCG RCKCDNSDGN GLIYGKFCEC DDRECIDDET EEICG--GHG ENSP00000365351/1-494 CSNAGTCHCG RCKCDNSDGS GLVYGKFCEC DDRECIDDET EEICG--GHG ENSBTAP00000053831/1-392 CSNAGTCHCG RCKCDNSDGN GLVYGKFCEC DDRECIDDET EEICGGKGHG 201 250 bmy_01386T0/1-427 ----SKIFVP VTVAGVSVII QMEMDSFMAT ESVTV---ET VTARLVGMEI ENSTTRP00000006423/1-494 KCYCGNCYCQ AGWHGDKCEF QCDITPWESK RRCTSPDGRV CSNRGICVCG BACU017439/1-353 KCYCGNCYCQ AGWHGDKCEF QCDITPWESK QRCTSPDGRV CSNRGICVCG ENSP00000365351/1-494 KCYCGNCYCK AGWHGDKCEF QCDITPWESK RRCTSPDGKI CSNRGTCVCG ENSBTAP00000053831/1-392 KCYCGNCYCQ AGWHGDKCEF QCDITPWESK RRCTSPDGKV CSNRGICVCG 251 300 bmy_01386T0/1-427 NANSSATSPP GR-------- -ASKDAHLQM AESAVTEGFV ---------- ENSTTRP00000006423/1-494 ECSCHDVDPT GDWGDIHGDT CECDERDCKA VYDRYSDDFC SGHGQCNCGR BACU017439/1-353 ECSCHDVDPT GDWGDIHGDT CECDERDCKS VYDRYSDDFC SGHGQCNCGR ENSP00000365351/1-494 ECTCHDVDPT GDWGDIHGDT CECDERDCRA VYDRYSDDFC SGHGQCNCGR ENSBTAP00000053831/1-392 ECSCHDVDPT GDWGDIHGDT CECDERDCRA VYDRYSDDFC SGHGQCNCGR 301 350 bmy_01386T0/1-427 --CVVNVLAM MLTRLETGGI FMGTPVSVMK GTARLSMTDI LMTSVLDT-- ENSTTRP00000006423/1-494 CDCKVGWYGK KCEHPRSCPL SAEESIKKCQ GSSALPCSGR GKCECGECTC BACU017439/1-353 CDCKVGWYGK KCEHPRSCPL SAEESIKKCQ GSSALPCSGR GKCECGECTC ENSP00000365351/1-494 CDCKAGWYGK KCEHPQSCTL SAEESIRKCQ GSSDLPCSGR GKCECGKCTC ENSBTAP00000053831/1-392 CDCKVGWYGK KCEHPRSCPL STEESIRKCQ GSATLPCSGR GKCECGKCTC 351 400 bmy_01386T0/1-427 --PKEIEVY- HVAHGDHIRK KTLHKTAAFI CG----SISG LCAVVGGTVF ENSTTRP00000006423/1-494 YPPGGGRVYG KTCECDDRRC EDLD---GVV CGXXXXXXXX XXXXXXXXXX BACU017439/1-353 YPPGGGKVYG KTCECDDRRC EDLD---GVV CGGHGTCSCG RCVCGRGWFG ENSP00000365351/1-494 YPPGDRRVYG KTCECDDRRC EDLD---GVV CGGHGTCSCG RCVCERGWFG ENSBTAP00000053831/1-392 YPPGDSKVYG KTCECDDRRC EDLD---GVV CGGHGTCSCG RCVCEKGWFG 401 450 bmy_01386T0/1-427 TVPP------ --QEWGQSNA KGKDQRLFPF QGTLFLVKPM ILILEWGWKI ENSTTRP00000006423/1-494 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSCHCGKCI CSAEEW---- BACU017439/1-353 ELCQHPRRCN LTEEQSRSLC ESADGVLCSG KGSCHCGKCV CSAEEW---- ENSP00000365351/1-494 KLCQHPRKCN MTEEQSKNLC ESADGILCSG KGSCHCGKCI CSAEEW---- ENSBTAP00000053831/1-392 TLCQHPRKCN LTEEQSNSLC ESADGILCSG KGSCHCGKCL CSAEEW---- 451 500 bmy_01386T0/1-427 QNDYIIVIIQ GHLVPAYQND ENTKQEISSV EE-------- EC-SGMDGTT ENSTTRP00000006423/1-494 -------YIS GEFCDCDDRD CDKHDGLICT GNGICSCGNC ECWDGWNGNA BACU017439/1-353 -------YVS GEFCGCDDRE CDKHDGLICT GNGICSCGNC ECWDGWNGNA ENSP00000365351/1-494 -------YIS GEFCDCDDRD CDKHDGLICT GNGICSCGNC ECWDGWNGNA ENSBTAP00000053831/1-392 -------YIS GEFCDCDDRD CDKHDGLICT GNGICSCGNC ECWDGWNGNA 501 550 bmy_01386T0/1-427 FVLD------ ENSTTRP00000006423/1-494 CEIWLGTEYP BACU017439/1-353 CEIWLGTEYP ENSP00000365351/1-494 CEIWLGSEYP ENSBTAP00000053831/1-392 CEIWLGTEYP