KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:39 2014 Check: 00 .. Name: BACU012345/1-524 Len: 1156 Check: 3607 Weight: 1.00 Name: ENSP00000348215/1-1105 Len: 1156 Check: 2198 Weight: 1.00 Name: ENSTTRP00000003163/1-1091 Len: 1156 Check: 2918 Weight: 1.00 Name: ENSBTAP00000053833/1-992 Len: 1156 Check: 7538 Weight: 1.00 Name: bmy_21652T0/1-836 Len: 1156 Check: 9542 Weight: 1.00 // 1 50 BACU012345/1-524 ---------- ---------- ----VYIINV TWSDSTSQTI YRRYSKFFDL ENSP00000348215/1-1105 MLAYCVQDAT VVDVEKRRNP SKHYVYIINV TWSDSTSQTI YRRYSKFFDL ENSTTRP00000003163/1-1091 MLAYCVQDAT VVDVEKRRNP SKHYVYIINV TWSDSTSQTI YRRYSKFFDL ENSBTAP00000053833/1-992 ---------- ---------- ---------- ---------- ---------- bmy_21652T0/1-836 ---------- ---------- ---------- ---------- ---------- 51 100 BACU012345/1-524 QASGGE---- ---------- ---------- ---------- ---------- ENSP00000348215/1-1105 QMQLLDKFPI EGGQKDPKQR IIPFLPGKIL FRRSHIRDVA VKRLKPIDEY ENSTTRP00000003163/1-1091 QMQLLDKFPI EGGQKDPKQR IIPFLPGKIL FRRSHIRDVA VKRLKPIDEY ENSBTAP00000053833/1-992 ---------- ---------- ---------- ---------- ---------- bmy_21652T0/1-836 ---------- ---------- ---------- ---------- ---------- 101 150 BACU012345/1-524 ---------- ---------- ---------- ---------- -----SSWRG ENSP00000348215/1-1105 CRALVRLPPH ISQCDEVFRF FEARPEDVNP PKEDYGSSKR KSVWLSSWAE ENSTTRP00000003163/1-1091 CRXXXXXXXX XXXXXXXFRF FEARPEDVNP PKEDYGSSKR KSVWLSSWAE ENSBTAP00000053833/1-992 ---------- ---------- ---------- ---------- --VWLSSWAE bmy_21652T0/1-836 ---------- ---------- ---------- ---------- ---------- 151 200 BACU012345/1-524 Q--------- ---ASMFASK YLTLSHCPYG SVYEMSQRWA AAVFMRSRGE ENSP00000348215/1-1105 SPKKDVTGAD ATAEPMILEQ YVVVSNYKKQ ENSELSLQAG EVVDVIEKNE ENSTTRP00000003163/1-1091 S-KKNVTGAD THAEPMILEQ YVVVSNYKKQ ENSELSLQAG EVVDVIEKNE ENSBTAP00000053833/1-992 SPKKDVTGAD TNAEPMILEQ YVVVSNYKKQ ENSELSLQAG EVVDVIEKNE bmy_21652T0/1-836 ---------- ---------- ---------- ---------- ---------- 201 250 BACU012345/1-524 AITWVRVSAV -----TWTGT LQLGARMQLL DKFPIEGGQK DPKQR----- ENSP00000348215/1-1105 SGWWFVSTSE EQ---GWVPA TYLEAQNGTR DDSDINTSKT GEE------- ENSTTRP00000003163/1-1091 SGWWFVSTSE EQ---GWVPA TYLEAQNGTR DDSDINTSKT GEVSKRRKAH ENSBTAP00000053833/1-992 SVWFWVGTAE EACYGAWQPE TMLETQSGEN QTMQINCMPA APVSKRRKAH bmy_21652T0/1-836 ---------- ---------- ---------- ---MMPC-PT PPC------- 251 300 BACU012345/1-524 ---------- ---------- ---------- ---------- ---------- ENSP00000348215/1-1105 ---------- ---------- -EKYVTVQPY TSQSKDEIGF EKGVTVEVIR ENSTTRP00000003163/1-1091 LRRLDRRWTL GGMVNRQHS- ---------- ---------- ---------- ENSBTAP00000053833/1-992 LRRLDRRWTL GGMVNRQHSR EEKYVTVQPY ASQSKDEIGF EKGVTVEVIR bmy_21652T0/1-836 ---------- ---------- ---------- ---------- ---------- 301 350 BACU012345/1-524 -------IIP FLPGHPNWT- -----QPKDR APSQSSSLAG TELTLGDAPG ENSP00000348215/1-1105 KNLEGWWYIR YL-GKEGWAP ASYLKKAKDD LPTRKKNLAG PVEIIGNIME ENSTTRP00000003163/1-1091 ---------R YL-GKEGWAP ASYLKKAKDD LPARKKNLAG PVEIIGNIME ENSBTAP00000053833/1-992 KNLEGWWYIR YL-GKEGWAP ASYLKKAKDE LPARKKNLAG PVEIIGNIME bmy_21652T0/1-836 ---------R YL-GKEGWAP ASYLKKAKDD LPARKKNLAG PVEIIGNIME 351 400 BACU012345/1-524 PYELMHHSSR DRLASSSTVA VSPENTPPPS PPQLQELTST EEVSGRQATG ENSP00000348215/1-1105 ISNLL----- NKKASGDKET PPAEGEGHEA PIAKKEISLP ILCNASNGSA ENSTTRP00000003163/1-1091 ISNLL----- NKKASGDKET TPAEGEAPEA PITKKEISLP ILCNASNGSA ENSBTAP00000053833/1-992 ISNLL----- NKKASGDKET PPAEGEGLEP PITKKEISLP ILCNASNGSA bmy_21652T0/1-836 ISNLL----- NKKASGDKET TPAEGEGPEA PITKKEISLP ILCNASNGSA 401 450 BACU012345/1-524 LQTTVGLRDW HGLKLVIGED ALSKILFRRS HIRDVAVRRL KP-------- ENSP00000348215/1-1105 V----GVPDR TVSRLAQGSP AVARIAPQRA QISSPNLRTR PPPRRESSLG ENSTTRP00000003163/1-1091 L----GVPER TVSKLAQGSP AVARIAPQRA QISSPNLRTR PPPRRESSLG ENSBTAP00000053833/1-992 L----GIPER TVSKLAQGSP AVARIAPQRA QISSPNLRTR PPPRRESSLG bmy_21652T0/1-836 L----GVPER TVSKLAQGSP AVARIAPQRA QISSPNLRTR PPPRRESSLG 451 500 BACU012345/1-524 ---------- --------ID EYCRALV--- ---------- ---------- ENSP00000348215/1-1105 FQLPKPPEPP SVEVEYYTIA EFQSCISDGI SFRGGQKAEV IDKNSGGWWY ENSTTRP00000003163/1-1091 FQLPKPPEPP SVEVEYYTIA EFQSCISDGI SFRGGQKAEV IDKNSGGWWY ENSBTAP00000053833/1-992 FQLPKPPEPP SVEVEYYTIA EFQSCISDGI SFRGGQKAEV IDKNSGGWWY bmy_21652T0/1-836 FQLPKPPEPP SVEVEYYTIA EFQSCISDGI SFRGGQKAEV IDKNSGGWWY 501 550 BACU012345/1-524 ---------- -------RLP PHIS-QCDEV FRFFEARPED VNPPKDTS-- ENSP00000348215/1-1105 VQIGEKEGWA PASYIDKRKK PNLSRRTSTL TRPKVPPPAP PSKPKEAEEG ENSTTRP00000003163/1-1091 VQIGEKEGWA PASYIDKRRK PNLSRRTSTL TRPKVPPPAP PSKPKEAEEG ENSBTAP00000053833/1-992 VQIGEKEGWA PASYIDKRKK PNLSRRTSTL TRPKVPPPAP PSKPKEADEG bmy_21652T0/1-836 VQIGEKEGWA PASYIDKRKK PNLSRRTSTL TRPKVPPPAP PSKPKEAEEG 551 600 BACU012345/1-524 ---------- ---------- ---PFAGM-- --------SR DYGSSKRKSD ENSP00000348215/1-1105 PTGASESQDS PRKLKYEEPE YDIPAFGFDS EPELSEEPVE DRASGERRPA ENSTTRP00000003163/1-1091 LAGAGESQDS PLRLRYEEPE YDIPAFGFDS EPELSEEPAE DGSSGDRRPG ENSBTAP00000053833/1-992 PAGPGESQDS PLRLKYEEPE YDIPAFGFDS EPELTEEPTE DGGSGDRRPT bmy_21652T0/1-836 LAGAGESQDS PLRLKYEEPE YDIPAFGFDS EPELSEEPAE DGGSGDRRPG 601 650 BACU012345/1-524 QKRRPDS--- ---------- ---------- ---------- ---------- ENSP00000348215/1-1105 QPHRPSPASS LQRARFKVGE SSEDVALEEE TIYENEGFRP YAEDTLSARG ENSTTRP00000003163/1-1091 QPHKPSPAFS LQRARFKVGG SAEDVALEEE TIYENEGFRA CAEDALSARR ENSBTAP00000053833/1-992 QPHRPSPASS LQRARFKVGG STEDVALEEE TIYENEGFRP CVEDGLSARR bmy_21652T0/1-836 QPRRPSPAFS LQRARFKVGG SAEDVALEEE TIYENEGFRA CAEDALSARR 651 700 BACU012345/1-524 ------EPCR QPLGLWISCL PNGSLFSSDS LLS------- ---------- ENSP00000348215/1-1105 SSGDSDSPGS SSLSLTRKNS PKSGSPKSSS LLKLKAEKNA QAEMGKNHSS ENSTTRP00000003163/1-1091 SSRDSDSPGG SPLSLARKNS PRSGSPKSSS LLKLKAEKNA QAELGKNHSS ENSBTAP00000053833/1-992 SSRDSDSPGG SPLSLA-ENS PKSDSPKSSS LL-LKAEKNA QAELGKNHSS bmy_21652T0/1-836 SSRDSDSPGG SPLSLARKNS PKSGSPKSSS LLKLKAEKNA QAELGKNHSS 701 750 BACU012345/1-524 ---------- --CCCLLSGD SEVWLSSWAE SPKKNVTGAD THAEPMILEQ ENSP00000348215/1-1105 ASFSSSITIN TTCCSSSSSS SSSLSKTSGD LKPRSASDAG IRGTPKVRAK ENSTTRP00000003163/1-1091 ASFSSSITIN T-CSSSSSSS SSLSKNSXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053833/1-992 ASFSSSITIN TTCSSSSSSS SSSLSKNSGD LKPRSASDAG IRGTPKVGAK bmy_21652T0/1-836 ASFSSSITIN TTCSSSSSSS SSSLSKNSGD LKPRSASDAG IRGTPKVGAR 751 800 BACU012345/1-524 ---------- ---------- ---------- ---------- ---------- ENSP00000348215/1-1105 KDADANAGLT SCPRAKPSVR PKPFLNRAES QSQEKMDIST LRRQLRPTGQ ENSTTRP00000003163/1-1091 XXXXXXXXXX XCARAKPSVR PKLFLNRTES QSQEKMDIST LRRQLRPTGQ ENSBTAP00000053833/1-992 KDADPKVGLT SCARAKPSVR PKPFLNRAES QSQEKMDIST LRRQLRPTGQ bmy_21652T0/1-836 KDADLKTGLT SCARAKPSVR PKPFLNRTES QSQEKMDIST LRRQLRPTGQ 801 850 BACU012345/1-524 ---------- ---------- ---------- ---------- ---------- ENSP00000348215/1-1105 LRGGLKGSKS EDSELPPQTA SEAPSEGSRR SSSDLITLPA TTPPCPTKKE ENSTTRP00000003163/1-1091 LRGGLKGSKS EDSELPPQMA FEGPGEGSRR GSADLITLPA ATPPCPTKKG ENSBTAP00000053833/1-992 LRGGLKGSKS EDSELPPQTA FEGPSEGSRR GSADLITLPA ASPPCPTKKG bmy_21652T0/1-836 LRGGLKGSKS EDSELPPQMA FEGPSEGSRR GSADLITLPA ATPPCPTKKG 851 900 BACU012345/1-524 -------YVV VSNYKKQENS ELSLQAGEVV DVIEKNESVF LHEHCYNWFY ENSP00000348215/1-1105 WEGPATSYMT CSAYQKVQDS EISFPAGVEV QVLEKQES-- ------GWWY ENSTTRP00000003163/1-1091 WEGQATSYTT CSAYQKVQDS EISFPAGVEV QVLEKLES-- ------GWWY ENSBTAP00000053833/1-992 REGQATSYTT CSAYQKVQDS EISFPAGVEV QVLEKLES-- ------GWWY bmy_21652T0/1-836 WEGQATSYMT CSAYQKVQDS EISFPAGVEV QVLEKLES-- ------GWWY 901 950 BACU012345/1-524 TDF------- ---------- --FTPTMRKA ESTVLLGPDG ITEGAGGQDQ ENSP00000348215/1-1105 VRFGELEGWA PSHYLVLDEN EQPDPSGKEL DTVPAKGRQ- -NEGKSDSLE ENSTTRP00000003163/1-1091 VRFGELEGWA PSHYLVLGEN EQFDPPGKEL DTVATKSKQ- -NEGKSDSLE ENSBTAP00000053833/1-992 VRFGELEGWA PAHYLVLGEN EPSDPPGKET DTVAPKSKQ- -NEGKSDSLE bmy_21652T0/1-836 VRFGELEGWA PSHYLVLGEN EQFDPPGREL DTVATKSKQ- -NEGKSDSLE 951 1000 BACU012345/1-524 KTQSAPGALG FHEYCQK--- -------GGV IRSEDSGH-- --------GC ENSP00000348215/1-1105 KIERRVQALN TVNQSKKATP PIPSKPPGGF GKTSGTPAVK MRNGVRQVAV ENSTTRP00000003163/1-1091 KIEKRVQALN TVNQSKRATP PIPSKPPGGF VKTSGAGAVK MRNGVRQVAV ENSBTAP00000053833/1-992 KIEKRVQALN TVNQSKRATP PIPSKPPGGF VKTSGAGAVK MRNGVRQVAV bmy_21652T0/1-836 KIEKRVQALN TVNQSKRATP PIPSKPPGGF VKTSGAGAVK MRNGVRQVAV 1001 1050 BACU012345/1-524 FPDTKLCHSP DHHAFIK--- ---------- --PGKKQAFH LHSSRT---- ENSP00000348215/1-1105 RPQSVFVSPP PKDNNLSCAL RRNESLTATD GLRGVRRNSS FSTARSAAAE ENSTTRP00000003163/1-1091 RPQSVFVSPP PKDSNLSCAL RRNESLTATD GLRGVRRNSS FSTARSAAAE ENSBTAP00000053833/1-992 RPQSVFVSPP PKDSNLSCAL RRNESLTATD NLRGVRRNSS FSAARSAAAE bmy_21652T0/1-836 RPQSVFVSPP PKDSNLSCAL RRNESLTATD GLRGVRRNSS FSTARSAAAE 1051 1100 BACU012345/1-524 ---------- ------PKIP SNPWGSKKKP VSA------- ---------- ENSP00000348215/1-1105 AKGRLAERAA SQGSDSPLLP AQRNSIPVSP VRPKPIEKSQ FIHNNLKDVY ENSTTRP00000003163/1-1091 AKGRLVERAA SQGSDPPLLP TQRNGIPVSP VRPKPIEKSQ FIHNNLKDVY ENSBTAP00000053833/1-992 AKGRLAERAA SQGSEPPLLP TQRNGIPVSP VRPKPIEKSQ FIHNNLKDVY bmy_21652T0/1-836 AKGRLVERAA SQGSDPPLLP TQRNGIPVSP VRPKPIEKSQ FIHNNLKDVY 1101 1150 BACU012345/1-524 ---------- ---------- ---------- ---------- ---------- ENSP00000348215/1-1105 VSIADYEGDE ETAGFQEGVS MEVLERNPNG WWYCQILDGV KPFKGWVPSN ENSTTRP00000003163/1-1091 VSIADYEGDE ETAGFQEGVS MEVLERNPNG WWYCQILDGV KPFKGWVPSN ENSBTAP00000053833/1-992 VSIADYEGDD ETAGFQEGVS MEVLERNPNG WWYCQILDGV KPFKGWVPSN bmy_21652T0/1-836 VSIADYEGDE ETAGFQEGVS MEVLERNPNG WWYCQILDGV KPFKGWVPSN 1151 1200 BACU012345/1-524 ------ ENSP00000348215/1-1105 YLEKKN ENSTTRP00000003163/1-1091 YLEKKN ENSBTAP00000053833/1-992 YLEKKN bmy_21652T0/1-836 YLEKKN