KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:40 2014 Check: 00 .. Name: ENSBTAP00000053835/1-154 Len: 303 Check: 9375 Weight: 1.00 Name: bmy_04088T0/1-303 Len: 303 Check: 8283 Weight: 1.00 Name: BACU020450/1-299 Len: 303 Check: 3425 Weight: 1.00 Name: ENSTTRP00000015630/1-265 Len: 303 Check: 1672 Weight: 1.00 // 1 50 ENSBTAP00000053835/1-154 ---------- ---------- ---------- ---------- ---------- bmy_04088T0/1-303 MATLLRGVLR PLRAFRSRPR PAAGKWRGRE GVLGTRHAAV PPTPPPLLSP BACU020450/1-299 MATLLRGVLR PLRAFRSRPR PAAGKWRGRE GVLGTRHAAV PPTPPPLLSP ENSTTRP00000015630/1-265 MRTLLRGVLR PLRAFRSRPW PA-------- ---------- ---------- 51 100 ENSBTAP00000053835/1-154 ---------- ---------- ---------- ---------- ---------- bmy_04088T0/1-303 RLFSFPADVP LRATSHGAGL LYPEHIPTSL LQKALLAAGS AGMAFYDPYR BACU020450/1-299 RLFSFPADVP LRATSHGAGL LYPEHIPTSP LQKALLAAGS AGMALYDPYR ENSTTRP00000015630/1-265 ------ADVP LRATSHGTGL LYPEHIPTSP LQKALLAAGS AGMALYDPYR 101 150 ENSBTAP00000053835/1-154 ---------- ---------- ---------- ---------- ---------M bmy_04088T0/1-303 HVPFVNTLIT SEAHLPKAGT IALACGSLLS PCHWPGQSER PRISLSTIDL BACU020450/1-299 HDMVAVLGET TGCRTLK--- -VLRDQMRRD PEGAQILQER PRISLSTLDL ENSTTRP00000015630/1-265 HDMVAVLGET TGCRTLK--- -VLRDQMRRD PEGAQILQER PRISLSTLDL 151 200 ENSBTAP00000053835/1-154 GKLRSLPEGS FGRAYLHFLD VNRVSPDTRA PTRFVDDEEL AYVIQRYREI bmy_04088T0/1-303 GKLRSLPEGS LGREYLRFLD VNRVSPDTRA PTRFVDDEEL AYVIQRYREV BACU020450/1-299 GKLRSLPEGS LGREYLRFLD VNRVSPDTRA PTRFVDDEEL AYVIQRYREV ENSTTRP00000015630/1-265 GKLRSLPEGS LGREYLRFLD VNRVSPDTRA PTRFVDSEEL AYVMQRYREV 201 250 ENSBTAP00000053835/1-154 HDMLHALLGM PTNILGEIVV KWFEAVQTGL PMCVLSALFG PIRLSAQSLQ bmy_04088T0/1-303 HDMLHTLLGM PTNILGEIVV KWFEAVQTGL PMCILSALFG PIQLSAQSLQ BACU020450/1-299 HDMLHTLLGM PTNILGEIVV KWFEAVQTGL PMCILSALFG PIQLSAQSLQ ENSTTRP00000015630/1-265 HDMLHTLLGM PTNILGEIVV KWFEAVQTGL PMCILSALFG PIQLSARNLQ 251 300 ENSBTAP00000053835/1-154 LLISELIPWA VENGRRAPCV LNVYYERRWE QPLQALRQEL GITEPPLRVE bmy_04088T0/1-303 ALVSKLIPWA VQNARRAPCV LNLYYERRWE QPLKALRQEL SITEPPVHVQ BACU020450/1-299 ALVSKLIPWA VQNARRAPCV LNLYYERRWE QPLKALRQEL SITEPPMHIQ ENSTTRP00000015630/1-265 VLVSKLIPWA VQNARRAPCV LNLYYERRWE QPLKALRQEL SITEPPMHVQ 301 350 ENSBTAP00000053835/1-154 GLV bmy_04088T0/1-303 GPA BACU020450/1-299 GPA ENSTTRP00000015630/1-265 GPA