KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:44 2014 Check: 00 .. Name: ENSTTRP00000010235/1-684 Len: 705 Check: 2888 Weight: 1.00 Name: ENSBTAP00000053845/1-682 Len: 705 Check: 7601 Weight: 1.00 Name: ENSP00000295743/1-686 Len: 705 Check: 1174 Weight: 1.00 Name: bmy_08831T0/1-701 Len: 705 Check: 1992 Weight: 1.00 Name: BACU014667/1-440 Len: 705 Check: 7432 Weight: 1.00 // 1 50 ENSTTRP00000010235/1-684 MQLGEQLLVS SVNLPGAHFY PLEGARGGGG GSAGHLPGAA PSPQRLDLDK ENSBTAP00000053845/1-682 MQLGEQLLVS SVNLPGAHFY PLEGARGGGG GSAGHLPGAA PSPQRLDLDK ENSP00000295743/1-686 MQLGEQLLVS SVNLPGAHFY PLESARGGSG GSAGHLPSAA PSPQKLDLDK bmy_08831T0/1-701 MQLGEQLLVS SVNLPGAHFY PLEGARGGGG GSAGHLPGAA PSPQRLDLDK BACU014667/1-440 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010235/1-684 APKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053845/1-682 APKKFSGSLS CEAASGEPAA AGAGAPATML SDADAGDAFA SAAAVAKPGP ENSP00000295743/1-686 ASKKFSGSLS CEAVSGEPAA ASAGAPAAML SDTDAGDAFA SAAAVAKPGP bmy_08831T0/1-701 APKKFSGSLS CEAGSGEPAA AGAGAPAAML SDADAGDAFA GTAAVAKPGP BACU014667/1-440 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010235/1-684 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053845/1-682 PDGRKGSPCG EEELPS---A AAAAAAAAAA SARYSMDSLS SERYYLQSPG ENSP00000295743/1-686 PDGRKGSPCG EEELPSAAAA AAAAAAAAAA TARYSMDSLS SERYYLQSPG bmy_08831T0/1-701 PDGRKGSPCG EEELPP---A AAAAAAAAAA SARYSMDSLS SERYYLQSPG BACU014667/1-440 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000010235/1-684 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053845/1-682 PQGSELAAPC SLFPYQAAAG APHGSVYPAP NGARYPYGSM LPPGGFPAAV ENSP00000295743/1-686 PQGSELAAPC SLFPYQAAAG APHGPVYPAP NGARYPYGSM LPPGGFPAAV bmy_08831T0/1-701 PQGSELAAPC SLFPYQAAAG APHGSVYPAP NGARYPYGSM LPPGGFPAAV BACU014667/1-440 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000010235/1-684 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053845/1-682 CPPGRAQFGT GAGASGGAGG -GGGGGGPGA YQYGQGAPLY GPYPAAAAAG ENSP00000295743/1-686 CPPGRAQFGP GAGAGSGAGG SSGGGGGPGT YQYSQGAPLY GPYPGAAAAG bmy_08831T0/1-701 CPPGRAQFGP GAGASGGAGG -SGGGGAPGA YQYGQGAPLY GPYSGAAAAG BACU014667/1-440 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000010235/1-684 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRMFPLK ENSBTAP00000053845/1-682 TCGGLGGLGV PGSGFRAHVY LCNRPLWLKF HRHQTEMIIT KQGRRMFPFL ENSP00000295743/1-686 SCGGLGGLGV PGSGFRAHVY LCNRPLWLKF HRHQTEMIIT KQGRRMFPFL bmy_08831T0/1-701 SCGGLGSLGV PGSGFRAHVY LCNRPLWLKF HRHQTEMIIT KQGRRMFPFL BACU014667/1-440 ---------- -----RAHVY LCNRPLWLKF HRHQTEMIIT KQGRRMFPFL 301 350 ENSTTRP00000010235/1-684 SFNINGLNPT AHYNVFVEVV LADPNHWRFQ GGKWVTCGKA DNNMQGNKMY ENSBTAP00000053845/1-682 SFNINGLNPT AHYNVFVEVV LADPNHWRFQ GGKWVTCGKA DNNMQGNKMY ENSP00000295743/1-686 SFNINGLNPT AHYNVFVEVV LADPNHWRFQ GGKWVTCGKA DNNMQGNKMY bmy_08831T0/1-701 SFNINGLNPT AHYNVFVEVV LADPNHWRFQ GGKWVTCGKA DNNMQGNKMY BACU014667/1-440 SFNINGLNPT AHYNVFVEVV LADPNHWRFQ GGKWVTCGKA DNNMQGNKMY 351 400 ENSTTRP00000010235/1-684 VHPESPNTGS HWMRQEISFG KLKLTNNKGA NNNNTQMIVL QSLHKYQPRL ENSBTAP00000053845/1-682 VHPESPNTGS HWMRQEISFG KLKLTNNKGA NNNNTQMIVL QSLHKYQPRL ENSP00000295743/1-686 VHPESPNTGS HWMRQEISFG KLKLTNNKGA NNNNTQMIVL QSLHKYQPRL bmy_08831T0/1-701 VHPESPNTGS HWMRQEISFG KLKLTNNKGA NNNNTQMIVL QSLHKYQPRL BACU014667/1-440 VHPESPNTGS HWMRQEISFG KLKLTNNKGA NNNNTQMIVL QSLHKYQPRL 401 450 ENSTTRP00000010235/1-684 HIVEVTEDGV EDLNEPSKTQ TFIFSETQFI AVTAYQNTDI TQLK-DHNPF ENSBTAP00000053845/1-682 HIVEVTEDGV EDLNEPSKTQ TFTFSETQFI AVTAYQNTDI TQLKIDHNPF ENSP00000295743/1-686 HIVEVTEDGV EDLNEPSKTQ TFTFSETQFI AVTAYQNTDI TQLKIDHNPF bmy_08831T0/1-701 HIVEVTEDGV EDLNEPSKTQ TFIFSETQFI AVTAYQNTDI TQLKIDHNPF BACU014667/1-440 HIVEVTEDGV EDLNEPSKTQ TFIFSETQFI AVTAYQNTDI TQLKIDHNPF 451 500 ENSTTRP00000010235/1-684 AKGFRDNYDS ---------- ---------S HQIVPGGRYG IQSFFPEPFV ENSBTAP00000053845/1-682 AKGFRDNYDS ---------- ---------S HQIVPGGRYG VQSFFPEPFV ENSP00000295743/1-686 AKGFRDNYDS ---------- ---------S HQIVPGGRYG VQSFFPEPFV bmy_08831T0/1-701 AKGFRDNYDS MYTASENDRL TPSPTDSPRS HQIVPGGRYG IQSFFPEPFV BACU014667/1-440 AKGFRDNYDS MYTASENDRL TPSPTDSPRS HQIVPGGRYG IQSFFPEPFV 501 550 ENSTTRP00000010235/1-684 NTLPQARYYN GERTVPQTNG LLSPQQSEEV ANPPQRWLVT PVQQPGTNKL ENSBTAP00000053845/1-682 NTLPQARYYN GERTVPQTNG LLSPQQSEEV ANPPQRWLVT PVQQPGTNKI ENSP00000295743/1-686 NTLPQARYYN GERTVPQTNG LLSPQQSEEV ANPPQRWLVT PVQQPGTNKL bmy_08831T0/1-701 NTLPQARYYN GERTVPQTNG LLSPQQSEEV ANPPQRWLVT PVQQPGTNKL BACU014667/1-440 NTLPQARYYN GERTVPQTNG LLSPQQSEEV ANPPQRWLVT PVQQPGTNKL 551 600 ENSTTRP00000010235/1-684 DIGSYESEYT SSTLLPYGIK SLPLQTSHAL GYYPDPTFPA MAGWGGRGSY ENSBTAP00000053845/1-682 DIGSYESEYS SSTLLPYGIK SLPLQTSHAL GYYPDPGFPA MAGWGGRGSY ENSP00000295743/1-686 DISSYESEYT SSTLLPYGIK SLPLQTSHAL GYYPDPTFPA MAGWGGRGSY bmy_08831T0/1-701 DIGSYESEYT SSTLLPYGIK SLPLQTSHAL GYYPDPTFPA MAGWGGRGSY BACU014667/1-440 DIGSYESEYT SSTLLPYGIK SLPLQTSHAL GYYPDPTFPA MAGWGGRGSY 601 650 ENSTTRP00000010235/1-684 QRKMAAGLPW TSRTSPPVFS EDQLSKEKVK EEINSSWIET PPSIKSLDSN ENSBTAP00000053845/1-682 QRKMAAGLPW TSRTSPPGFS EDQLSKEKVK EEIGSSWIET PPSIKSLDSN ENSP00000295743/1-686 QRKMAAGLPW TSRTSPTVFS EDQLSKEKVK EEIGSSWIET PPSIKSLDSN bmy_08831T0/1-701 QRKMAAGLPW TSRTSPPVFS EDQLSKEKVK EEISSSWIET PPSIKSLDSN BACU014667/1-440 QRKMAAGLPW TSRTSPPVFS EDQLSKEKVK EEISSSWIET PPSIKSLDSS 651 700 ENSTTRP00000010235/1-684 DS-VYTSACK RRRLSPSSSS NENSPSIKCE DINAEEYSKD TSKGMGGYYA ENSBTAP00000053845/1-682 DSGVYTSACK RRRLSPSTSS NENSPSIKCE DINAEEYSKD SSKGMGGYYA ENSP00000295743/1-686 DSGVYTSACK RRRLSPSNSS NENSPSIKCE DINAEEYSKD TSKGMGGYYA bmy_08831T0/1-701 DSGVYTSACK RRRLSPSSSS NENSPSIKCE DISAEEYSKD TSKGMGGYYA BACU014667/1-440 DSGVYTSACK RRRLSPSSSS NENSPSIKCE DINAEEYSKD TAKGMGGYYA 701 750 ENSTTRP00000010235/1-684 FYTTP ENSBTAP00000053845/1-682 FYTTP ENSP00000295743/1-686 FYTTP bmy_08831T0/1-701 FYTTP BACU014667/1-440 FYTTP