KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:44 2014 Check: 00 .. Name: BACU020552/1-423 Len: 438 Check: 576 Weight: 1.00 Name: ENSBTAP00000053847/1-433 Len: 438 Check: 3088 Weight: 1.00 Name: bmy_03523T0/1-340 Len: 438 Check: 8698 Weight: 1.00 Name: ENSTTRP00000016324/1-434 Len: 438 Check: 4225 Weight: 1.00 // 1 50 BACU020552/1-423 LPLFLQSIPG PRSTQCHERR QNPEAKKSGS Q-KYSRVMQA NGCQLHSPSG ENSBTAP00000053847/1-433 FSLFLPSLPG PRSAHRHERR QSREAKK--S QNKYSRAMQA NCSQLHSPSG bmy_03523T0/1-340 ---------- MKERLSTTER QSPEAKKSGS QKKYSGVMQA NCSPLHSPSG ENSTTRP00000016324/1-434 LPLFLQSLPG TRCAHRHERR QSPEAKKSGS QKKYSGVMQA NCSQLHSPSG 51 100 BACU020552/1-423 AAGSEDALAS -CVQTRLIGE ASCFDSGDVH IQMNSIPKEC AGNPSSRNIR ENSBTAP00000053847/1-433 AAGSEDASAS QCVQARLTGE ASCLYSGDVH IPISSLPKEC AENPSSRNTR bmy_03523T0/1-340 AAGSEDASAS QCVQTRLTGE ASCLYSGDVH IQINSMPKEC AENPSSRNIR ENSTTRP00000016324/1-434 AAGSEDASAS QCVQTRLTGE ASCLYSGDVH IQINSMPKEC AENPSSRNVR 101 150 BACU020552/1-423 SGVQSCTQER VHSR-QSHLH HEARQPDDTD TESGDHGSSS FSEFQYLFKG ENSBTAP00000053847/1-433 SGVHSCTHGC THSRLRSHTH NEARQPDDSD MEYGDHGSSS FSEFRYLFKW bmy_03523T0/1-340 SGVHSCTHGC VHSRLRSHSH NEARQPDDTE TESGDHGSSS FSEFRYLFKW ENSTTRP00000016324/1-434 SGVHSCTHGC VHSRLRSHSH NEARQPDDTE MESGDRGSSS FSEFQYLFKW 151 200 BACU020552/1-423 LQKSLLFILI LGVKLVIQHT TGVALGIGLL TTFIHATKSI LNQVFLRERC ENSBTAP00000053847/1-433 LQKSLPYILI LGVKLVMQHT TGISLGIGLL TTFIYANKSI VNQVFLRERC bmy_03523T0/1-340 LQKSLPYILI LGVKLVMQHI TGISLGIGLL TTFIYANRSI VNQVFLR--- ENSTTRP00000016324/1-434 LQKGLPYILI LGVKLVMQHI TGISLGIGLL TTFIYANKSI VNQVFLR-RC 201 250 BACU020552/1-423 SEIQCAWLLV FIAGSSILSY YTFYSQSLYY SLIFKKPALD -SSFWEVL-I ENSBTAP00000053847/1-433 SKIQCAWLLV FLAGSSVLLY YTFHSQSLYY SLIFLNPTLD YSSFWEVLWV bmy_03523T0/1-340 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016324/1-434 SKIQCAWLLV FLARSSVLLY YTFHSQSLYY SLIFFNPTLD YSSFWDVLWI 251 300 BACU020552/1-423 AGITDFILKF LFMGLKCLFY WELYSISCIM PFKSKRYWYM ILEELCQYYQ ENSBTAP00000053847/1-433 VGITDFILKF LFMGLKCLI- --LLVPSLIM PFKSKGYWYM LLEELCQYYR bmy_03523T0/1-340 ---------- ---------- ---------- -----GYWYM VLEELCQFYR ENSTTRP00000016324/1-434 VGITDFILKF LFMGLKCLI- --LLVPSFIM PFKSKGYWYM VLEELCQYYR 301 350 BACU020552/1-423 TFVPIPVWFR YLISYGEFGN VTRWILGILL ALLYLILKVL DIFAHLKTFR ENSBTAP00000053847/1-433 TFVPIPVWFR YLISYGEFGN VTRWSLGILL ALLYLILKLL DFFGHLRTFR bmy_03523T0/1-340 TFVPVPVWFR YLISYGEFGN VTRWSLGILL ALLYLILKLL DFFGHLRTFR ENSTTRP00000016324/1-434 TFVPVPVWFR YLISYGEFGN VTGWSLGILL ALLYLILKLL DFFGHLRTFR 351 400 BACU020552/1-423 QDLPIFFTLP SYEVAASKRQ CSDVNDICSV CQAEFQKPIL I-CQHIFCE- ENSBTAP00000053847/1-433 QVLRIFVTRP SYGVPASKRQ CSDVDDICSI CQAEFQKPIL LICQHIFCEE bmy_03523T0/1-340 RVLRIFFTRP SYGVAASKRQ CSDVDDICSI CQAEFQKPIL LICQHIFCEE ENSTTRP00000016324/1-434 RVLRIFFTRP SHGVAASKRQ CSDVDDICSI CQAEFQKPIL LTCHHIFCEE 401 450 BACU020552/1-423 --------ER KCPLCRTVIS DHINKWKDGV TSSHLQIY ENSBTAP00000053847/1-433 CITLWFNREK TCPLCRTVIS DHINKWKDGA TSSHLQIY bmy_03523T0/1-340 CITLWFNREK TCPLCRTVIS DHINKWQDGA TSSHLQIY ENSTTRP00000016324/1-434 CITLWFNREK TCPLCRTVIS DHINKWQDGA TSSHLQIY