KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:45 2014 Check: 00 .. Name: bmy_09550T0/1-396 Len: 571 Check: 3327 Weight: 1.00 Name: BACU012555/1-81 Len: 571 Check: 9660 Weight: 1.00 Name: ENSP00000264451/1-568 Len: 571 Check: 7284 Weight: 1.00 Name: ENSTTRP00000003650/1-565 Len: 571 Check: 4181 Weight: 1.00 Name: ENSBTAP00000053849/1-566 Len: 571 Check: 6374 Weight: 1.00 // 1 50 bmy_09550T0/1-396 ---------- ---------- ---------- ---------- ---------- BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 MLPGL-AAAA AHRCSWSSLC RLRLRCRAAA CNPSDRQEWQ NLVTFGSFSN ENSTTRP00000003650/1-565 MLPGLAAAAA AHRCSWSSLC RLRLRCRAAA CGSSDLQEWQ NLVTFGSFSN ENSBTAP00000053849/1-566 MLPGLAAAAA AHRCSWSSLC RLRLRCRAAA RGSSDRQEWQ SLVTFGSFSN 51 100 bmy_09550T0/1-396 ---------- ---------- ---------- ---------- ---AENIGAE BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 MVPCSHPYIG TLSQVKLYST NVQKEGQGSQ TLRVEKVPSF -ETAEGIGTE ENSTTRP00000003650/1-565 IVPCC----- TLNQVKSYST NVQKEGQGSQ THKMEKVPSF DEAAENIGAE ENSBTAP00000053849/1-566 SVPCC----- TLNQVKLYST NVQKEGQGSQ SQKMEKVPSF DEAAENMGAE 101 150 bmy_09550T0/1-396 LKAPLIKQEP LQVRVKAVLK KREYGPKYTQ NNFITGVRAM NEFCLKSSDL BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 LKAPL-KQEP LQVRVKAVLK KREYGSKYTQ NNFITGVRAI NEFCLKSSDL ENSTTRP00000003650/1-565 LKAPLIKQEP LQVRVKAVLK KREYGPKYTQ NNFITGVRAM NEFCLKSSDL ENSBTAP00000053849/1-566 LKAPIIKQEP LQVRVKAVLK KREYGPKYTQ NNFITGVRAM NEFCLKSSDL 151 200 bmy_09550T0/1-396 EQLRKIRRRS PHEDTESFTV YLRSDVETKS LEVWGSPEAL AREKKLRKEA BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 EQLRKIRRRS PHEDTESFTV YLRSDVEAKS LEVWGSPEAL AREKKLRKEA ENSTTRP00000003650/1-565 EQLRKIRRRS PHEDTESFTV YLRSDVEAKS LEVWG-PEAL AREKKLRKEA ENSBTAP00000053849/1-566 EQLRKIRRRS PHEDTESFTV YLRSDVEAKS LEVWGSPEAL AREKKLRKEA 201 250 bmy_09550T0/1-396 EIEYRERLFR NQKILREYGE FLGNTKPRSR PTSVFFKGPG KVVMVAICIN BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 EIEYRERLFR NQKILREYRD FLGNTKPRSR TASVFFKGPG KVVMVAICIN ENSTTRP00000003650/1-565 EIEYRERLFR NQKVLREYRE FLGNTKPRSR TTSVFFKGPG KVVMVAICIN ENSBTAP00000053849/1-566 EIEYRERLFR NQKILREYRD FLGNTKPRSR TASIFLKGPG KVVMVAICIN 251 300 bmy_09550T0/1-396 GLNCFFKFLA WIYTGSASMF SEAIHSLSDT CNQVWI---- ---------- BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 GLNCFFKFLA WIYTGSASMF SEAIHSLSDT CNQGLLALGI SKSVQTPDPS ENSTTRP00000003650/1-565 GLNCFFKFLA WIYTGSASMF SEAIHSLSDT CNQALLALGI SKSVQTPDPT ENSBTAP00000053849/1-566 GLNCFFKFLA WIYTGSASMF SEAIHSLSDT CNQALLALGI SKSVQTPDPT 301 350 bmy_09550T0/1-396 -------FKY --------AL YCFTNQWCWY F--------H DGCRIILAYC BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 HPYGFSNMRY ISSLISGVGI FMMGAGLSWY HGVMGLLHPQ PIESLLWAYC ENSTTRP00000003650/1-565 HPYGFSNMRY IASLISGVGI FMMGAGLSWY HGVMGLLNPQ PIESLLWAYC ENSBTAP00000053849/1-566 HPYGFSNMRY IASLISGVGI FMMGAGLSWY HGIMGLLNPQ PIESLLWAYC 351 400 bmy_09550T0/1-396 ILAGSLVSEG ATLLVAVNEL RRSARAKGMS LYKY------ ---------- BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 ILAGSLVSEG ATLLVAVNEL RRNARAKGMS FYKYVMESRD PSTNVILLED ENSTTRP00000003650/1-565 ILAGSLVSEG ATLLVAVNEL RRSARAKGMS LYKYVMESRD PSTNVILLED ENSBTAP00000053849/1-566 ILAGSLVSEG ATLLVAVNEL RRSARAKGMS FYKYVMESRD PSTNVILLED 401 450 bmy_09550T0/1-396 ---------- ---------- GNPLYDSLGS LGVGTLLGVV SAFLIYTNTE BACU012555/1-81 ---------- ---------- ---------- ---------- ---------- ENSP00000264451/1-568 TAAVLGVIIA ATCMGLTSIT GNPLYDSLGS LGVGTLLGMV SAFLIYTNTE ENSTTRP00000003650/1-565 TAAVLGVTIA ATCMGLTSIT GNPLYDSLGS LGVGTLLGVV SAFLIYTNTE ENSBTAP00000053849/1-566 TAAVLGVTIA ATCMGLTSIT GNPLYDSLGS LGVGTLLGVV SAFLIYTNTE 451 500 bmy_09550T0/1-396 ALLGRSIQPE QVQRLTELLE NDPSVRAIHD VKATDLGLGK VRFKAEVDFD BACU012555/1-81 ---------- ---------- ---------- --MQDLGLGK VRFKAEVDFD ENSP00000264451/1-568 ALLGRSIQPE QVQRLTELLE NDPSVRAIHD VKATDLGLGK VRFKAEVDFD ENSTTRP00000003650/1-565 ALLGRSIQPE QVQRLTELLE NDPSVRAIHD VKATDLGLGK VRFKAEVDFD ENSBTAP00000053849/1-566 ALLGRSIQPE QVQRLTELLE NDPSVRAIHD VKATDLGLGK VRFKAEVDFD 501 550 bmy_09550T0/1-396 GRVVTRSYLE KQDFDQMLQE IQEVKTPEEL ETFMLKHGEN IIDTLGAE-- BACU012555/1-81 GQVVTRSYLE KQDFDQMLQE IQEVKTPEEL ETFMLKHGEN MIDTLGDEVD ENSP00000264451/1-568 GRVVTRSYLE KQDFDQMLQE IQEVKTPEEL ETFMLKHGEN IIDTLGAEVD ENSTTRP00000003650/1-565 GRVVTRSYLE KQDFDQMLQE IQEVKTPEEL ETFMLKHGEN IIDTLGAEVD ENSBTAP00000053849/1-566 GRVVTRSYLE KQDFDQMLQE IQEVKTPEEL ETFMLKHGEN IIDTLGAEVD 551 600 bmy_09550T0/1-396 -------KRN PEVRHVDLEI L BACU012555/1-81 RLEKELKKRN PEV------- - ENSP00000264451/1-568 RLEKELKKRN PEVRHVDLEI L ENSTTRP00000003650/1-565 RLEKELKKRN PEVRHVDLEI L ENSBTAP00000053849/1-566 RLEKELKKRN PEVRHVDLEI L