KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:47 2014 Check: 00 .. Name: ENSP00000422464/1-345 Len: 347 Check: 7181 Weight: 1.00 Name: ENSBTAP00000053852/1-307 Len: 347 Check: 8910 Weight: 1.00 Name: ENSTTRP00000010549/1-345 Len: 347 Check: 8649 Weight: 1.00 Name: bmy_09258T0/1-290 Len: 347 Check: 3078 Weight: 1.00 Name: BACU010665/1-180 Len: 347 Check: 5193 Weight: 1.00 // 1 50 ENSP00000422464/1-345 MSLFGLLLLT SALAGQRQGT QAESNLSSKF QFSSNKEQNG VQDPQHERII ENSBTAP00000053852/1-307 ---------- ---------- ---------- ---------G VQDPQHERII ENSTTRP00000010549/1-345 MLLFGLLLLT SALAGQRPGT RAESSLSSKL QLASTKEQNG VQDPQHERII bmy_09258T0/1-290 ---------- ---------- ---------- -MVPERRMLR AKDGRAEGQV BACU010665/1-180 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000422464/1-345 TVSTNGSIHS PRFPHTYPRN TVLVWRLVAV EENVWIQLTF DERFGLEDPE ENSBTAP00000053852/1-307 TVSTNGSIHS PRFPHTYPRN MDLVWRLVAV EENVWIQLTF DERFGLEDPE ENSTTRP00000010549/1-345 TVSTNGSIHS PRFPHTYPRN MVLVWRLVAV EENVWIQLTF DERFGLEDPE bmy_09258T0/1-290 LLTSCIDAPV PGRPFLFLTY FSESPQ-SAV PGKRWFP--- ---------- BACU010665/1-180 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000422464/1-345 DDICKYDFVE VEEPS-DGTI LGRWCGSGTV PGKQISKGNQ IRIRFVSDEY ENSBTAP00000053852/1-307 DDICKYDFVE VEEPS-DGTI LGRWCGSGSV PGKQISKGNQ IRIRFVSDEY ENSTTRP00000010549/1-345 DDICKYDFVE VEEPS-DGAV LGRWCGSGTV PGKQISKGNQ IRIRFVSDEY bmy_09258T0/1-290 GDLPPFNWGD LRPGTLGGEE LGSWC-CDFL DGRWDQLCRR IKVDSIA--- BACU010665/1-180 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000422464/1-345 FPSEPGFCIH YNIVMPQFTE AVSPSVLPPS ALPLDLLNNA ITAFSTLEDL ENSBTAP00000053852/1-307 FPSEPGFCIH YNIVMPQLTE TVSPSSLPAS ALPLDLLNNA VTAFSTLEDL ENSTTRP00000010549/1-345 FPSEPGFCIH YNIVMPQLTE TVSPSVLPAA ALPLDLLNNA VTAFSTLEDL bmy_09258T0/1-290 -------MLS EYALLSQFTE TVSPSVLPAA ALPLDLLNNA VTAFSTLEDL BACU010665/1-180 ---------- ------QFTE TVSPSVLPAA ALPLDLLNNA VTAFSTLEDL 201 250 ENSP00000422464/1-345 IRYLEPERWQ LDLEDLYRPT -WQLLGKAFV FGRKSRVVDL NLLTEEVRLY ENSBTAP00000053852/1-307 IRYLEPDRWQ LDLEDLYRPT SLQLLGKNFV FGRKSRVVDL NLLKEEVRLY ENSTTRP00000010549/1-345 IRYLEPDRWQ LDLEDLYRPT -WQLLGKAFV FGRKSRVLGL NLLKEEVRLY bmy_09258T0/1-290 IRYLEPDRWQ LDLEDLYRPT -WQLLGKAFV FGRKSRVLGL NLLKEEVRLY BACU010665/1-180 IRYLEPDRWQ LDLEDLYRPT -WQLLGKAFV FGRKSRVLGL NLLKEEVRLY 251 300 ENSP00000422464/1-345 SCTPRNFSVS IREELKRTDT IFWPGCLLVK RCGGNCACCL HNCNECQCVP ENSBTAP00000053852/1-307 SCTPRNFSVS VREELKRTDT IFWPGCLLVK RCGGNCACCL HTCSECQCVP ENSTTRP00000010549/1-345 SCTPRNFSVS IREELKRTDT VFWPGCLLVK RCGGNCACCL HTCSECQCVP bmy_09258T0/1-290 SCTPRNFSVS IREELKRTDT VFWPGCLLVK RCGGNCACCL HTCSECQCVP BACU010665/1-180 SCTPRNFSVS IREELKRTDT VFWPGCLLVK RCGGNCACCL HTCSECQCVP 301 350 ENSP00000422464/1-345 SKVTKKYHEV LQLRPKTGVR GLHKSLTDVA LEHHEECDCV CRGSTGG ENSBTAP00000053852/1-307 SKVTKKYHEV LQLRPKTGVR GLHKSLTDVA LEHHEECDCV CRGNPGG ENSTTRP00000010549/1-345 SKVTKKYHEV LQLRPKTGVR GLHKSLTDVA LEHHEECDCV CRGNPGG bmy_09258T0/1-290 SKVTKKYHEV LQLRPKTGVR GLHKSLTDVA LEHHEECDCV CRGSPGG BACU010665/1-180 SKVTKKYHEV LQLRPKTGVR GLHKSLTDVA LEHHEECDCV CRGSPGG