KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:48 2014 Check: 00 .. Name: ENSTTRP00000010443/1-1108 Len: 1110 Check: 9039 Weight: 1.00 Name: bmy_06961T0/1-589 Len: 1110 Check: 9906 Weight: 1.00 Name: ENSP00000280758/1-1104 Len: 1110 Check: 4779 Weight: 1.00 Name: ENSBTAP00000053857/1-1108 Len: 1110 Check: 5869 Weight: 1.00 // 1 50 ENSTTRP00000010443/1-1108 KSRRGKKPQV RTPEDPTLDS G-GGAADSVR SSXXXXXXXX XXXXXXXXXX bmy_06961T0/1-589 --MRVDVPCV TLL------- -WEGAG---- ---------- -VPAT----- ENSP00000280758/1-1104 MARRGKKPVV RTLEDLTLDS GYGGAADSVR SSNLSLCCSD SHPASPYGGS ENSBTAP00000053857/1-1108 MARRGKKPVV RTLEDLTLDS GYGGAADSVR SSNLSLCCSD SHPASPYGGS 51 100 ENSTTRP00000010443/1-1108 XXXXXXXXXX XRHNSFDTVN TALVEDSEGL DCAGQHCSRL LPDLDEVPWT bmy_06961T0/1-589 -WGDLGQL-- ---------- ---------- ---------- ---LKEVAFT ENSP00000280758/1-1104 CWPPLADSMH SRHNSFDTVN TALVEDSEGL DCAGQHCSRL LPDLDEVPWT ENSBTAP00000053857/1-1108 CWPPLTDSMH SRHNSFDTVN TALVEDSEGL DCAGQHCSRL LPDLDEVPWT 101 150 ENSTTRP00000010443/1-1108 LQELEALLLR SRDPRAGSVP PGGLPKDALA KLSTLVSRAL VRIAKEAQRL bmy_06961T0/1-589 LR------VE ERGTRS---- ---------- -LSKAEGRAL ---------- ENSP00000280758/1-1104 LQELEALLLR SRDPRAGPAV PGGLPKDALA KLSTLVSRAL VRIAKEAQRL ENSBTAP00000053857/1-1108 LQELEALLLR SRDPRAGPVA PGGLPKDALA KLSTLVSRAL VRIAKEAQRL 151 200 ENSTTRP00000010443/1-1108 SLRFAKCTKY EIQSAMEIVL SWGLAAHCTA AALAALSLYN MSSAGGDRLG bmy_06961T0/1-589 ---------- ---------- -W-------- ---------- MGGAMGERME ENSP00000280758/1-1104 SLRFAKCTKY EIQSAMEIVL SWGLAAHCTA AALAALSLYN MSSAGGDRLG ENSBTAP00000053857/1-1108 SLRFAKCTKY EIQSAMEIVL SWGLAAHCTA AALAALSLYN MSSAGGDRLG 201 250 ENSTTRP00000010443/1-1108 RGKSARCGLT FSVGRVYRWM VDSRVALRIH EHAAIYLTAC MESLFRDIYA bmy_06961T0/1-589 VG-------- ---------- ---------- ---------- ---------- ENSP00000280758/1-1104 RGKSARCGLT FSVGRVYRWM VDSRVALRIH EHAAIYLTAC MESLFRDIYS ENSBTAP00000053857/1-1108 RGKSARCGLT FSVGRVYRWM VDSRVALRIH EHAAIYLTAC MESLFRDIYA 251 300 ENSTTRP00000010443/1-1108 RVVASGLPRS CSGPGPGSSS SSGPGQGSGP GAAPVADKER EAPGGGAASG bmy_06961T0/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000280758/1-1104 RVVASGVPRS CSGPGSG--S GSGPGPSSGP GAAPAADKER EAPGGGAASG ENSBTAP00000053857/1-1108 RVVASGLPRS CSGLGPG--S SSGPGQGSGP GAAPAADKER EVPGGGAASG 301 350 ENSTTRP00000010443/1-1108 GACSAASSAS GGSSCCAPPA -AAAAAAAAA PPAAAANHHH HHHHALHEAP bmy_06961T0/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000280758/1-1104 GACSAASSAS GGSSCCAPP- ---AAAAAAV PPAAAANHHH HHHHALHEAP ENSBTAP00000053857/1-1108 GACSAASSAS GGSSCCAPPT VAAAAAAAAA PPAAAANHHH HHHHALHEAP 351 400 ENSTTRP00000010443/1-1108 KFTVETLEHT VNNDSEIWGL LQPYQHLICG KNASGVLCLP DSLNLHRDPQ bmy_06961T0/1-589 ---------- ---------- ---------S RTEERVLCLP DSLNLHRDPQ ENSP00000280758/1-1104 KFTVETLEHT VNNDSEIWGL LQPYQHLICG KNASGVLCLP DSLNLHRDPQ ENSBTAP00000053857/1-1108 KFTVETLEYT VNNDSEIWGL LQPYQHLICG KNASGVLCLP DSLNLHRDPQ 401 450 ENSTTRP00000010443/1-1108 RTSKPGELPM FSQSELRTIE QSLLATRVGS IAELSDLVSR AMHHLQPLNA bmy_06961T0/1-589 RTSKPGELPL FSQSELRTIE QSLLATRVGS IAELSDLVSR AMHHLQPLNA ENSP00000280758/1-1104 RSNKPGELPM FSQSELRTIE QSLLATRVGS IAELSDLVSR AMHHLQPLNA ENSBTAP00000053857/1-1108 RTSKPGELPM FSQSELRTIE QSLLATRVGS IAELSDLVSR AMHHLQPLNA 451 500 ENSTTRP00000010443/1-1108 KHHGNGTPLH HKQGALYWEP EALYTLCYFM HCPQMEWENP NVEPSKVNLQ bmy_06961T0/1-589 KHHGNGTPLH HKQGALYWEP EALYTLCYFM HCPQMEWENP NVEPSKVNLQ ENSP00000280758/1-1104 KHHGNGTPLH HKQGALYWEP EALYTLCYFM HCPQMEWENP NVEPSKVNLQ ENSBTAP00000053857/1-1108 KHHGNGTPLH HKQGALYWEP EALYTLCYFM HCPQMEWENP NVEPSKVNLQ 501 550 ENSTTRP00000010443/1-1108 VERPFLVLPP LMEWIRVAVA HAGHRRSFSM DSDDVRQAAR LLLPGVDCEP bmy_06961T0/1-589 VERPFLVLPP LMEWIRVAVA HAGHRRSFSM DSDDVRQAAR LLLPGVDCEP ENSP00000280758/1-1104 VERPFLVLPP LMEWIRVAVA HAGHRRSFSM DSDDVRQAAR LLLPGVDCEP ENSBTAP00000053857/1-1108 VERPFLVLPP LMEWIRVAVA HAGHRRSFSM DSDDVRQAAR LLLPGVDCEP 551 600 ENSTTRP00000010443/1-1108 RQLRADDCFC ASRKLDAVAI EAKFKQDLGF RMLNCGRTDL VKQAVSLLGP bmy_06961T0/1-589 RQLRADDCFC ASRKLDAVAI EAKFKQDLGF RMLNCGRTDL VKQAVSLLGP ENSP00000280758/1-1104 RQLRADDCFC ASRKLDAVAI EAKFKQDLGF RMLNCGRTDL VKQAVSLLGP ENSBTAP00000053857/1-1108 RQLRADDCFC ASRKLDAVAI EAKFKQDLGF RMLNCGRTDL VKQAVSLLGP 601 650 ENSTTRP00000010443/1-1108 DGINTMSEQG MTPLMYACVR GDEAMVQMLL DAGADLNVEV VSTPHKYPSV bmy_06961T0/1-589 DGINTMSEQG MTPLMYACVR GDEAMVQMLL DAGADLNVE- ---------- ENSP00000280758/1-1104 DGINTMSEQG MTPLMYACVR GDEAMVQMLL DAGADLNVEV VSTPHKYPSV ENSBTAP00000053857/1-1108 DGINTMSEQG MTPLMYACVR GDEAMVQMLL DAGADLNVEV VSTPHKYPSV 651 700 ENSTTRP00000010443/1-1108 HPETRHWTAL TFAVLHGHIP VVQLLLDAGA KVEGSVEHGE ENYSETPLQL bmy_06961T0/1-589 ---------- ---------- ---LLLDAGA KVEGSVEHGE ENYSETPLQL ENSP00000280758/1-1104 HPETRHWTAL TFAVLHGHIP VVQLLLDAGA KVEGSVEHGE ENYSETPLQL ENSBTAP00000053857/1-1108 HPETRHWTAL TFAVLHGHIP VVQLLLDAGA KVEGSVEHGE ENYSETPLQL 701 750 ENSTTRP00000010443/1-1108 AAAVGNFELV SLLLERGADP LIGTMYRNGI STTPQGDMNS FSQAAAHGHR bmy_06961T0/1-589 AAAVGNFEL- ---------- ---------- ---------- ---------- ENSP00000280758/1-1104 AAAVGNFELV SLLLERGADP LIGTMYRNGI STTPQGDMNS FSQAAAHGHR ENSBTAP00000053857/1-1108 AAAVGNFELV SLLLERGADP LIGTMYRNGI STTPQGDMNS FSQAAAHGHR 751 800 ENSTTRP00000010443/1-1108 NVFRKLLAQP EKEKSDILSL EEILAEGTDL AETTPPPLCA SRNSKAKLRA bmy_06961T0/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000280758/1-1104 NVFRKLLAQP EKEKSDILSL EEILAEGTDL AETAPPPLCA SRNSKAKLRA ENSBTAP00000053857/1-1108 NVFRKLLAQP EKEKSDILSL EEILAEGTDL AETAPPPLCA SRNSKAKLRA 801 850 ENSTTRP00000010443/1-1108 LREAMYHSAE HGYVDVTIDI RSIGVPWTLH TWLESLRIAF QQHRRPLIQC bmy_06961T0/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000280758/1-1104 LREAMYHSAE HGYVDVTIDI RSIGVPWTLH TWLESLRIAF QQHRRPLIQC ENSBTAP00000053857/1-1108 LREAMYHSAE HGYVDVTIDI RSIGVPWTLH TWLESLRIAF QQHRRPLIQC 851 900 ENSTTRP00000010443/1-1108 LLKEFKTIQE EEYTEELVTQ GLPLMFEILK ASKXXXXXXX XXXXXXXXXX bmy_06961T0/1-589 ---------- ---------- ---------- ---NEVISQQ LCVIFTHCYG ENSP00000280758/1-1104 LLKEFKTIQE EEYTEELVTQ GLPLMFEILK ASKNEVISQQ LCVIFTHCYG ENSBTAP00000053857/1-1108 LLKEFKTIQE EEYTEELVTQ GLPLMFEILK ASKNEVISQQ LCVIFTHCYG 901 950 ENSTTRP00000010443/1-1108 XXXXXXXTEI KRKQTSRLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06961T0/1-589 PYPIPKLTEI KRKQTSRLDP HFLNNKEMSD VTFLVEGRPF YAHKVLLFTA ENSP00000280758/1-1104 PYPIPKLTEI KRKQTSRLDP HFLNNKEMSD VTFLVEGRPF YAHKVLLFTA ENSBTAP00000053857/1-1108 PYPIPKLTEI KRKQTSRLDP HFLNNKEMSD VTFLVEGRPF YAHKVLLFTA 951 1000 ENSTTRP00000010443/1-1108 XXXFKALLSN KPTNDNTCIE IGYVKYPIFQ LVMQYLYYGG PESLLIKNNE bmy_06961T0/1-589 SPRFKALLSS KPTNDNTCIE IGYVKYPIFQ LVMQYLYYGG PESLLIKNNE ENSP00000280758/1-1104 SPRFKALLSS KPTNDGTCIE IGYVKYSIFQ LVMQYLYYGG PESLLIKNNE ENSBTAP00000053857/1-1108 SPRFKALLSS KPTNDSTCIE IGYVKYPIFQ LVMQYLYYGG PESLLIKNNE 1001 1050 ENSTTRP00000010443/1-1108 IMELLSAAKF FQLEALQRHC EIICAKSINT DNCVDIYNHA KFLGVMELSA bmy_06961T0/1-589 IMELLSAAKF FQLEALQRHC EIICAKSINT DNCVDIYNHA KFLGVMELSA ENSP00000280758/1-1104 IMELLSAAKF FQLEALQRHC EIICAKSINT DNCVDIYNHA KFLGVTELSA ENSBTAP00000053857/1-1108 IMELLSAAKF FQLEALQRHC EIICAKSINT DNCVDIYNHA KFLGVTELSA 1051 1100 ENSTTRP00000010443/1-1108 YCEGYFLKNM MVLIENEAFK QLLYDKNGEG TGQDVLQDLQ RTLAIRIQSI bmy_06961T0/1-589 YCEGYFLKNM MVLIENEAFK QLLYDKNGEG TGQDVLQDLQ RTLAIRIQSI ENSP00000280758/1-1104 YCEGYFLKNM MVLIENEAFK QLLYDKNGEG TGQDVLQDLQ RTLAIRIQSI ENSBTAP00000053857/1-1108 YCEGYFLKNM MVLIENEAFK QLLYDKNGEG TGQDVLQDLQ RTLAIRIQSI 1101 1150 ENSTTRP00000010443/1-1108 HLSSSKGSVV bmy_06961T0/1-589 HLSSSKGSVV ENSP00000280758/1-1104 HLSSSKGSVV ENSBTAP00000053857/1-1108 HLSSSKGSVV