KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:50 2014 Check: 00 .. Name: ENSP00000411532/1-1531 Len: 1559 Check: 213 Weight: 1.00 Name: ENSTTRP00000016028/1-1502 Len: 1559 Check: 4891 Weight: 1.00 Name: ENSBTAP00000053858/1-1533 Len: 1559 Check: 4683 Weight: 1.00 Name: bmy_13561T0/1-1377 Len: 1559 Check: 9948 Weight: 1.00 Name: BACU007035/1-1370 Len: 1559 Check: 400 Weight: 1.00 // 1 50 ENSP00000411532/1-1531 MEVSPLQPVN ENMQVNKIKK NEDAKKRLSV ERIYQKKTQL EHILLRPDTY ENSTTRP00000016028/1-1502 -QASPRHPVD DNMQVNKTKK NEDAKKRLSI ERIYQKKTQL EHILLRPDTY ENSBTAP00000053858/1-1533 MEVSPLQPVN ENMQVSKTKK NEDAKKRLSI ERIYQKKTQL EHILLRPDTY bmy_13561T0/1-1377 ---------- ---------- ---------- ---------- ---------- BACU007035/1-1370 ---------- --MQVNKTKK NEDAKKRLSI ERIYQKKTQL EHILLRPDTY 51 100 ENSP00000411532/1-1531 IGSVELVTQQ MWVYDEDVGI NYREVTFVPG LYKIFDEILV NAADNKQRDP ENSTTRP00000016028/1-1502 IGSVESVTQQ MWVYDEDIGI NCREVTFVPG LYKIFDEILV NAADNKQRDP ENSBTAP00000053858/1-1533 IGSVESVTQQ MWVYDEDIGI NYREVTYVPG LYKIFDEILV NAADNKQRDP bmy_13561T0/1-1377 ---------- ---------- ---------- ---------- ---------- BACU007035/1-1370 IGSVESVTQQ IWVYDEDIGI NCREVTFVPG LYKIFDEILV NAADNKQRDP 101 150 ENSP00000411532/1-1531 KMSCIRVTID PENNLISIWN NGKGIPVVEH KVEKMYVPAL IFGQLLTSSN ENSTTRP00000016028/1-1502 KMSCIRVTID PENNLISIWN NGKGIPVVEH KVEKMYVPAL IFGQLLTSSN ENSBTAP00000053858/1-1533 KMSCIRITID PENNLISIWN NGKGIPVVEH KVEKMYVPAL IFGQLLTSSN bmy_13561T0/1-1377 -----MLKFK RENNLISIWN NGKGIPVVEH KVEKMYVPAL IFGQLLTSSN BACU007035/1-1370 KMSCIRVTID PENNLISIWN NGKGIPVVEH KVEKMYVPAL IFGQLLTSSN 151 200 ENSP00000411532/1-1531 YDDDEKKVTG GRNGYGAKLC NIFSTKFTVE TASREYKKMF KQTWMDNMGR ENSTTRP00000016028/1-1502 YDDEEKKVTG GRNGYGAKLC NIFSTKFTVE TASREYKKMF KQTWRDNMGR ENSBTAP00000053858/1-1533 YDDEEKKVTG GRNGYGAKLC NIFSTKFTVE TASREYKKMF KQTWMDNMGK bmy_13561T0/1-1377 YDDEEKK--- ---------- ---------- ---------- --TWMDNMGR BACU007035/1-1370 YDDEEKK--- ---------- ---------- ---------- --TWMDNMGR 201 250 ENSP00000411532/1-1531 AGEMELKPFN GEDYTCITFQ PDLSKFKMQS LDKDIVALMV RRAYDIAGST ENSTTRP00000016028/1-1502 AGEMELKPFS GEDYTCITFH PDLSKFKMQN LDKDIVALMV RRAYDIAGST ENSBTAP00000053858/1-1533 AGEMELKPFS GEDYTCITFH PDLSKFKMQS LDKDIVALMV RRAYDIAGST bmy_13561T0/1-1377 AGEMELKPFS GEDYTCITFH PDLSKFKMQS LDKDIVALMV RRAYDIAGST BACU007035/1-1370 AGEMELKPFS GEDYTCITFH PDLSKFKMQS LDKDIVALMV RRAYDIAGST 251 300 ENSP00000411532/1-1531 KDVKVFLNGN KLPVKGFRSY VDMYLKDKLD ETGNSLKVIH EQVNHRWEVC ENSTTRP00000016028/1-1502 KDVKVFLNGN KLPIKGFRSY VDMYLKDKVD ETGNALKIIH EQVNPRWEVC ENSBTAP00000053858/1-1533 KDVKVYLNGN RLPVKGFRSY VDLYLKDKVD ETGNPLKVIH EQVNHRWEVC bmy_13561T0/1-1377 KDVKVFLNGN KLPIKGFRSY VDMYLKDKVD ETGNPLKIIH EQVNPRWEVC BACU007035/1-1370 KDVKVFLNGN KLPIKGFRSY VDMYLKDKVD ETGNPLKIIH EQVNPRWEVC 301 350 ENSP00000411532/1-1531 LTMSEKGFQQ ISFVNSIATS KGGRHVDYVA DQIVTKLVDV VKKKNKGGVA ENSTTRP00000016028/1-1502 LTMSEKGFQQ ISFVNSIATS KGGRHVDYVA DQIVTKLVDV VKKKNKGGVA ENSBTAP00000053858/1-1533 LTMSEKGFQQ ISFVNSIATS KGGRHVDYVA DQIVTKLVDV VKKKNKGGVA bmy_13561T0/1-1377 LTMSEKGFQQ ISFVNSIATS KGGRHVDYVA DQIVTKLVDV VKKKNKGGVA BACU007035/1-1370 LTMSEKGFQQ ISFVNSIATS KGGRHVDYVA DQIVTKLVDV VKKKNKGGVA 351 400 ENSP00000411532/1-1531 VKAHQVKNHM WIFVNALIEN PTFDSQTKEN MTLQPKSFGS TCQLSEKFIK ENSTTRP00000016028/1-1502 VKAHQNRSP- WSSVLA---- ---------- ---------- --QFFEFFLF ENSBTAP00000053858/1-1533 VKAHQVKNHM WIFVNALIEN PTFDSQTKEN MTLQVKSFGS TCQLSEKFIK bmy_13561T0/1-1377 VKAHQVKNHM WIFVNALIEN PTFDSQTKEN MTLQVKSFGS TCQLSEKFIK BACU007035/1-1370 VKAHQVKNHM WIFVNALIEN PTFDSQTKEN MTLQVKSFGS TCQLSEKFIK 401 450 ENSP00000411532/1-1531 AAIGCGIVES ILNWVKFKAQ VQLNKKCSAV KHNRIKGIPK LDDANDAGGR ENSTTRP00000016028/1-1502 LAIGCGIVES ILNWVKFKAQ VQLNKKCSAV KHNRIKGIPK LDDANDAGGR ENSBTAP00000053858/1-1533 AAIGCGIVES ILNWVKFKAQ IQLNKKCSAV KHNRIKGIPK LDDANDAGGR bmy_13561T0/1-1377 AATGCGIVES ILNWVKFKAQ IQLNKKCSAV KHNRIKGIPK LDDANDAGGR BACU007035/1-1370 AATGCGIVES ILNWVKFKAQ IQLNKKCSAV KHNRIKGIPK LDDANDAGGR 451 500 ENSP00000411532/1-1531 NSTECTLILT EGDSAKTLAV SGLGVVGRDK YGVFPLRGKI LNVREASHKQ ENSTTRP00000016028/1-1502 NSTECTLILT EGDSAKTLAV SGLGVVGRDK YGVFPLRGKM LNVREASHKQ ENSBTAP00000053858/1-1533 NSTECTLILT EGDSAKTLAV SGLGVVGRDK YGVFPLRGKI LNVREASHKQ bmy_13561T0/1-1377 NSTECTLILT EGDSAKTLAV SGLGVVGRDK YGVFPLRGKL LNVREASHKQ BACU007035/1-1370 NSTECTLILT EGDSAKTLAV SGLGVVGRDK YGVFPLRGKL LNVREASHKQ 501 550 ENSP00000411532/1-1531 IMENAEINNI IKIVGLQYKK NYEDEDSLKT LRYGKIMIMT DQDQDGSHIK ENSTTRP00000016028/1-1502 IMENAEINNI IKIVGLQYKK NYEDEDSLKT LRYGKIMIMT DQDQDGSHIK ENSBTAP00000053858/1-1533 IMENAEINNI IKIVGLQYKK NYEDEDSLKT LRYGKIMIMT DQDQDGSHIK bmy_13561T0/1-1377 DQDGSHIK-- ----GL---- ---------- ---------- ---------- BACU007035/1-1370 IMENAEINNI IKIVGLQYKK NYEDEDSLKT LRYGKIMIMT DQ-------- 551 600 ENSP00000411532/1-1531 GLLINFIHHN WPSLLRHRFL EEFITPIVKV SKNKQEMAFY SLPEFEEWKS ENSTTRP00000016028/1-1502 GLLINFIHHN WPSLLHHRFL EEFITPIVKV S-NKQEVAFY SLPEFEEWKN ENSBTAP00000053858/1-1533 GLLINFIHHN WPSLLRHRFL EEFITPIVKV SKNKQEMAFY SLPEFEEWKS bmy_13561T0/1-1377 --LINFIHHN WPSLLRHRFL EEFITPIVKV SKNKQEMAFY SLPEFEEWKS BACU007035/1-1370 ---------- ---------- ---------V SKNKQEMAFY SLPEFEEWKS 601 650 ENSP00000411532/1-1531 STPNHKKWKV KYYKGLGTST SKEAKEYFAD MKRHRIQFKY SGPEDDAAIS ENSTTRP00000016028/1-1502 STPNHKKWKV KYYKGLGTST SKEAKEYFAD MKRHRIQFKY SGPEDDAAIS ENSBTAP00000053858/1-1533 STPNHKKWKV KYYKGLGTST SKEAKEYFAD MKRHRIQFKY SGPEDDAAIS bmy_13561T0/1-1377 SMPNHKKWKV KYYKGLGTST SKEAKEYFAD MKRHRIQFKY SGPEDDAAIS BACU007035/1-1370 SMPNHKKWKV KYYKGLGTST SKEAKEYFAD MRRHRIQFKY SGPEDDAAIS 651 700 ENSP00000411532/1-1531 LAFSKKQIDD RKEWLTNFME DRRQRKLLGL PEDYLYGQTT TYLTYNDFIN ENSTTRP00000016028/1-1502 LAFSKKQIDD RKEWLTHFME DRRQRKLLGL PEDYLYGQTT TYLTYNDFIN ENSBTAP00000053858/1-1533 LAFSKKQTDD RKEWLTHFME DRRQRKLLGL PDDYLYGQAT TYLTYNDFIN bmy_13561T0/1-1377 LAFSKKQIDD RKEWLTHFME DRRQRKLLGL PEDYLYGQTT TYLTYNDFIN BACU007035/1-1370 LAFSKKQIDD RKEWLTHFME DRRQRKLLGL P--------- ---------- 701 750 ENSP00000411532/1-1531 KELILFSNSD NERSIPSMVD GLKPGQRKVL FTCFKRNDKR EVKVAQLAGS ENSTTRP00000016028/1-1502 KELILFSNSD NERSIPSMVD GLKPGQRKVL FTCFKRNDKR EVKVAQLAGS ENSBTAP00000053858/1-1533 KELILFSNSD NERSIPSMVD GLKPGQRKVL FTCFKRNDKR EVKVAQLAGS bmy_13561T0/1-1377 KELILFSNSD NERSIPSMVD GLKPGQRKVL FTCFKRNDKR EVKVAQLAGS BACU007035/1-1370 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000411532/1-1531 VAEMSSYHHG EMSLMMTIIN LAQNFVGSNN LNLLQPIGQF GTRLHGGKDS ENSTTRP00000016028/1-1502 VAEMSSYHHG EMSLMMTIIN LAQNFVGSNN LNLLQPIGQF GTRLHGGKDS ENSBTAP00000053858/1-1533 VAEMSSYHHG EMSLMMTIIN LAQNFVGSNN LNLLQPIGQF GTRLHGGKDS bmy_13561T0/1-1377 VAEMSSYHHG EMSLMMTIIN LAQNFVGSNN LNLLQPIGQF GTRLHGGKDS BACU007035/1-1370 ---------- EMSLMMTIIN LAQNFVGSNN LNLLQPIGQF GTRLHGGKDS 801 850 ENSP00000411532/1-1531 ASPRYIFTML SSLARLLFPP KDDHTLKFLY DDNQRVEPEW YIPIIPMVLI ENSTTRP00000016028/1-1502 ASPRYIFTML SPLARLLFPP KDDHTLRFLY DDNQRVEPEW YIPIIPMVLI ENSBTAP00000053858/1-1533 ASPRYIFTML SPLARLLFPA KDDHTLKFLY DDNQRVEPEW YIPIIPMVLI bmy_13561T0/1-1377 ASPRYIFTML SPLARLLFPP KDDHTLKFLY DDNQRVEPEW YIPIIPMVLI BACU007035/1-1370 ASPRYIFTML SPLARLLFPP KDDHTLKFLY DDNQRVEPEW YIPIIPMVLI 851 900 ENSP00000411532/1-1531 NGAEGIGTGW SCKIPNFDVR EIVNNIRRLM DGEEPLPMLP SYKNFKGTIE ENSTTRP00000016028/1-1502 NGAEGIGTGW SCKIPNFDVR EVVNNIRRLM DGEEPLPMLP SYKNFKGTVE ENSBTAP00000053858/1-1533 NGAEGIGTGW SCKIPNFDVR EVVNNIRRLM DGEEPLPMLP SYKNFKGTVE bmy_13561T0/1-1377 NGAEGIGTGW SCKIPNFDVR EVVNNIRRLM DGEEPLPMLP SYKNFKGTID BACU007035/1-1370 NGAEGIGTGW SCKIPNFDVR EVVNNIRRLM DGEEPLPMLP SYKNFKGTID 901 950 ENSP00000411532/1-1531 ELAPNQYVIS GEVAILNSTT IEISELPVRT WTQTYKEQVL EPMLNGTEKT ENSTTRP00000016028/1-1502 ELAPNQYVIS GEMSILNSTT IEISELPIRT WTQTYKEQVL EPMLNGTEKT ENSBTAP00000053858/1-1533 ELAPNQYVIS GEVAILNSTT IEISELPIRT WTQTYKEQVL EPMLNGTEKT bmy_13561T0/1-1377 ELAPNQYVIS GEVAILNSTT IEISELPIRT WTQTYKEQVL EPMLNGTEKT BACU007035/1-1370 ELAPNQYVIS GEVAILNSTT IEISELPIRT WTQTYKEQVL EPMLNGTEKT 951 1000 ENSP00000411532/1-1531 PPLITDYREY HTDTTVKFVV KMTEEKLAEA ERVGLHKVFK LQTSLTCNSM ENSTTRP00000016028/1-1502 PPLITDYREY HTDTTVKFVV KMTEEKLAEA ERVGLHKVFK LQTSLTCNSM ENSBTAP00000053858/1-1533 PPLITDYREY HTDTTVKFVV KMTEEKLAEA ERAGLHKVFK LQTSLTCNSM bmy_13561T0/1-1377 PPLITDYREY HTDTTVKFVV KMTEEKLAEA ERVGLHKVFK LQTSLTCNSM BACU007035/1-1370 PPLITDYREY HTDTTVKFVV KMTEEKLAEA ERVGLHKVFK LQTSLTCNSM 1001 1050 ENSP00000411532/1-1531 VLFDHVGCLK KYDTVLDILR DFFELRLKYY GLRKEWLLGM LGAESAKLNN ENSTTRP00000016028/1-1502 VLFDHVGCLK KYDTVLDILR DFFELRLKYY GLRKEWLLGM LGAESAKLNN ENSBTAP00000053858/1-1533 VLFDHVGCLK KYDTVLDILR DFFELRLKYY GLRKEWLLGM LGAESAKLNN bmy_13561T0/1-1377 VLFDHVGCLK KYDTVLDILR DFFELRLKYY GLRKEWLLGM LGAESAKLNN BACU007035/1-1370 VLFDHVGCLK KYDTVLDILR DFFELRLKYY GLRKEWLLGM LGAESAKLNN 1051 1100 ENSP00000411532/1-1531 QARFILEKID GKIIIENKPK KELIKVLIQR GYDSDPVKAW KEAQQKVPDE ENSTTRP00000016028/1-1502 QARFILEKID GKIIIENKPK KELIKVLIQR GYDSDPVKAW KEAQQKVADE ENSBTAP00000053858/1-1533 QARFILEKID GKIIIENKPK KELIKVLIQR GYDSDPVKAW KEAQQKVPDE bmy_13561T0/1-1377 QARFILEKID GKIIIENKPK KELIKVLIQR GYDSDPVKAW KEAQQKVPDE BACU007035/1-1370 QARFILEKID GKIIIENKPK KELIKVLIQR GYDSDPVKAW KEAQQKVPDE 1101 1150 ENSP00000411532/1-1531 EENEESDNEK ETEKSDSVTD SGPTFNYLLD MPLWYLTKEK KDELCRLRNE ENSTTRP00000016028/1-1502 EENEESDNEK ETEKSDSVTD SGPTFNYLLD MPLWYLTKEK KDELCRLRNE ENSBTAP00000053858/1-1533 EENEESDSEK ETEKSDSATD SGPTFNYLLD MPLWYLTKEK KDELCKLRNE bmy_13561T0/1-1377 EENEESDNEK ETEKSDSVTD SGPTFNYLLD MPLWYLTKEK KDELCKLRNE BACU007035/1-1370 EENEESDNEK ETEKSDSVTD SGPTFNYLLD MPLWYLTKEK KDELCKLRNE 1151 1200 ENSP00000411532/1-1531 KEQELDTLKR KSPSDLWKED LATFIEELEA VEAKEKQDEQ VGLPGKGGKA ENSTTRP00000016028/1-1502 KEQELETLKR KSPSDLWKED LAAFVEELEA VEAKEKQDEQ IGLPGKGGKA ENSBTAP00000053858/1-1533 KEQELETLKR KSPSDLWKED LAAFVEELEV VEAKEKQDEQ IGLPGKGGKA bmy_13561T0/1-1377 KEQELETLKR KSPSDLWKED LAAFIEELEA VEAKEKQDEQ IGLPGKGGKA BACU007035/1-1370 KEQELETLKR KSPSDLWKED LAAFIEELEA VEAKEKQDEQ IGLPGKGGKA 1201 1250 ENSP00000411532/1-1531 KGKKTQMAEV LPSPRGQRVI PRITIEMKAE AEKKNKKKIK NENTEGSPQE ENSTTRP00000016028/1-1502 KGKKTQRAEV LPSPCGKRVI PQVTIEMKAE AEKKIKKKIK XXXXXXXXXX ENSBTAP00000053858/1-1533 KGKKTQMVEI LPSPSGKRVI PRVTEEMKAE AEKKIKKKIK SENTEGSPQE bmy_13561T0/1-1377 KGKKTQRAEV LPSPCGKRVI PQVTIEMKAE AEKKIKKKIK NENTDGSPQE BACU007035/1-1370 KGKKTQRAEV LPSPCGKRVI PQVTIEMKAE AEKKIKKKIK NENTEGSPQE 1251 1300 ENSP00000411532/1-1531 DGVELEGLKQ RLEKKQKREP GTKTKKQTTL AFKPIKKGKK RNPWSDSESD ENSTTRP00000016028/1-1502 XXXXXXXXXX XXXXXXXXXX XTKTKKQTTL PFKPVKKAKK RNPWSDSESD ENSBTAP00000053858/1-1533 DGMEMESQKL RLEKKQKREP VTKTKKQTTL PFKPIKKAKK RNPWSDSESD bmy_13561T0/1-1377 DGMEIEGLKQ RLEKKQKREP GTKTKKQTTL PXKPVKKAKK RNPWSDSESD BACU007035/1-1370 DGMEIEGLKQ RLEKKQKREP GTKTKKQTTL PFKPVKKAKK RNPWSDSESD 1301 1350 ENSP00000411532/1-1531 RSSDESNFDV PPRETEPRRA ATKTKFTMDL DSDEDFSDFD EKTDDEDFVP ENSTTRP00000016028/1-1502 IDSNESNFDV PPREKEPRRA ATKTKFTMDL DSDEDFSDFD ENTQDEDRVP ENSBTAP00000053858/1-1533 MSSNESNFDV PPREKESRRA AAKTKFTMDL DSDEDFSDFD EDTQD-DFVP bmy_13561T0/1-1377 MSSNESNFDV PPREKEPRRA ATKTKFTXDL DSDEDFSDFD ANAQDEDFVP BACU007035/1-1370 MSSNESNFDV PPREKEPRRA ATKTKFTMDL DSDEDFSDFD ENAQDEDFVP 1351 1400 ENSP00000411532/1-1531 SDASPPKTKT SPKLSNKELK PQKSVVS--- ---------- ---------- ENSTTRP00000016028/1-1502 SDASPPRTTT SPKHTNKELK PQKSATS--- ---------- ---------- ENSBTAP00000053858/1-1533 SNASPPKIQT SPKHNNKELK PLKSASS--- ---------- ---------- bmy_13561T0/1-1377 SDASPPGTKT SPKHTNKELK PQKSATSGIQ SRDKSSKQIF MYCLYVLFSF BACU007035/1-1370 SDASPPGTKT SPKHTKKELK PQKIATS--- ---------- ---------- 1401 1450 ENSP00000411532/1-1531 -----DLEAD DVKGSVPLSS SPPATHFPDE TEITNPVPKK NVTVKKTAAK ENSTTRP00000016028/1-1502 -----DLNAD DAKDNVPPPP SSPAADFPAV TKTTNPVPKK NVTVKKTAAK ENSBTAP00000053858/1-1533 --EVTELDAD DAEDNAPPPP SSPAADFPAV TETINPVPKK NVTAKKTAAK bmy_13561T0/1-1377 PFEVTDLNAD DAKDNVPPPP SSPAADFPAV TKTINPVPKR NVTVKKTAAK BACU007035/1-1370 ---VTDLNAD DAKDNVPPPP SSPAADFPAV TKTINPVPKK NVTVKKTAAK 1451 1500 ENSP00000411532/1-1531 SQSSTSTTGA KKRAAPKGTK RDPALNSGVS QKPDPAKTKN RRKRKPSTSD ENSTTRP00000016028/1-1502 SQSSTSTTGA KKRAAPKGTK KDPDLDSDVS KKPNPPKTKS HRKRKPSTSD ENSBTAP00000053858/1-1533 SQSSTSTTGT KKRAAPKKTK KDPDLDSDVS KKPNAPKTKT RRKRKASSSD bmy_13561T0/1-1377 SQSSTSTTGA KKRAAPKGTK KDPDLDSDVS KKPNPPQTKS RRKRKPSTSD BACU007035/1-1370 SQSSTSTTGA KKRAAPKGTK KDPDLDSDVS KKPNPPQIKS RRKRKPSTSD 1501 1550 ENSP00000411532/1-1531 DSDSNFEKIV SKAVTSKKSK GESDDFHMDF DSAVAPRAKS VRAKKPIKYL ENSTTRP00000016028/1-1502 DSDSNFEKMI SKAVTSKKPK EDSDDFHLDL DSAVASRAKS GRTKKPIKYL ENSBTAP00000053858/1-1533 DSDSNFEKLI SKAVTSKKPK EESDDFHLDL DSAVGSRAKS VRTKKPIKYL bmy_13561T0/1-1377 DSDSNFEQMI SKAVTSKKPK EDSDDFHLDL DSAVASRAKS GRTKKPIKYL BACU007035/1-1370 DSDSNFEKMI SKAVTSKKPK EDSDDFHLDL DSAVASRAKS GRTKKPIKYL 1551 1600 ENSP00000411532/1-1531 EESDEDDLF ENSTTRP00000016028/1-1502 EESDEDDLF ENSBTAP00000053858/1-1533 EESDEDDFF bmy_13561T0/1-1377 EESDEDDLF BACU007035/1-1370 EESDEDDLF