KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:51 2014 Check: 00 .. Name: ENSTTRP00000001002/1-881 Len: 995 Check: 8113 Weight: 1.00 Name: bmy_07467T0/1-691 Len: 995 Check: 4300 Weight: 1.00 Name: ENSP00000263881/1-894 Len: 995 Check: 3655 Weight: 1.00 Name: BACU001616/1-831 Len: 995 Check: 1545 Weight: 1.00 Name: ENSBTAP00000053863/1-894 Len: 995 Check: 7569 Weight: 1.00 // 1 50 ENSTTRP00000001002/1-881 MNPWFDLSRR NPQEDFELIQ RIGSG-YGDV YKARNVNTGE LAAIKVIKLE bmy_07467T0/1-691 ---------- ---------- ---------- ---------- ---------- ENSP00000263881/1-894 MNPGFDLSRR NPQEDFELIQ RIGSGTYGDV YKARNVNTGE LAAIKVIKLE BACU001616/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053863/1-894 MNPGFDLSRR NPQEDFELIQ RIGSGTYGDV YKARNVNTGE LAAIKVIKLE 51 100 ENSTTRP00000001002/1-881 PGEDFAVVQQ EIIMMKDCKH PNIVAYFGSY LRRDKLWICM EFCGGGSLQD bmy_07467T0/1-691 ---------- ---------- ---------- ---------- ---------- ENSP00000263881/1-894 PGEDFAVVQQ EIIMMKDCKH PNIVAYFGSY LRRDKLWICM EFCGGGSLQD BACU001616/1-831 ---------- ---MMKDCKH PNIVAYFGSY LRRDKLWICM EFCGGGSLQD ENSBTAP00000053863/1-894 PGEDFAVVQQ EIIMMKDCKH PNIVAYFGSY LRRDKLWICM EFCGGGSLQD 101 150 ENSTTRP00000001002/1-881 IYHVTGPLSE LQIAYVSRET LQXWPSL--- --------GA NILLTDNGHV bmy_07467T0/1-691 ---------- ---------- ---------- ---------- ---------- ENSP00000263881/1-894 IYHVTGPLSE LQIAYVSRET LQGLYYLHSK GKMHRDIKGA NILLTDNGHV BACU001616/1-831 IYHVTGPLSE LQIAYVSRET LQGLYYLHSK GKMHRDIKGA NILLTDNGHV ENSBTAP00000053863/1-894 IYHVTGPLSE LQIAYVSRET LQGLYYLHSK GKMHRDIKGA NILLTDNGHV 151 200 ENSTTRP00000001002/1-881 KLADFGVSAQ ITATIAKRKS FIGTPYXXXX XXXXXXXXXX XXXXXXXXXX bmy_07467T0/1-691 ---------- ---------- -------MAP EVAAVERKGG YNQLCDLWAV ENSP00000263881/1-894 KLADFGVSAQ ITATIAKRKS FIGTPYWMAP EVAAVERKGG YNQLCDLWAV BACU001616/1-831 KLADFGVSAQ ITATIAKRKS FIGTPYWMAP EVAAVERKGG YNQLCDLWAV ENSBTAP00000053863/1-894 KLADFGVSAQ ITATIAKRKS FIGTPYWMAP EVAAVERKGG YNQLCDLWAV 201 250 ENSTTRP00000001002/1-881 XXXXXXXXXX XXXXXXXXXX XALFLMTKSN FQPPKLKDKM KWSNSFHHFV bmy_07467T0/1-691 GITAIELAEL QPPMFDLHPM RALFLMTKSN FQPPKLKDKM KWSNSFHHFV ENSP00000263881/1-894 GITAIELAEL QPPMFDLHPM RALFLMTKSN FQPPKLKDKM KWSNSFHHFV BACU001616/1-831 GITAIELAEL QPPMFDLHPM RALFLMTKSN FQPPKLKDKI KWSNSFHHFV ENSBTAP00000053863/1-894 GITAIELAEL QPPMFDLHPM RALFLMTKSN FQPPKLKDKM KWSNSFHHFV 251 300 ENSTTRP00000001002/1-881 KMALTKNPKK RPTAEKLLQH PFVTQPLTRS LAIELLDKVN NPDHSTYHDF bmy_07467T0/1-691 KMALTKNPKK RPTAEKLLQH PFVTQPLTRS LAIELLDKVN NPDHSTYHDF ENSP00000263881/1-894 KMALTKNPKK RPTAEKLLQH PFVTQHLTRS LAIELLDKVN NPDHSTYHDF BACU001616/1-831 KMALTKNPKK RPTAEKLLQH PFVTQPLTRS LAIELLDKVN NPDHSTYHDF ENSBTAP00000053863/1-894 KMALTKNPKK RPTAEKLLQH PFVTQPLTRS LAIELLDKVN NPDHSTYHDF 301 350 ENSTTRP00000001002/1-881 DDDDPEPLVA VPHRIHSTSR NVREEKTRSE INFGQVKFDP PLRKETEPHH bmy_07467T0/1-691 DDDDPEPLVA VPHRIHSTSR NVREEKTRSE INFGQVKFDP PLRKETEPHH ENSP00000263881/1-894 DDDDPEPLVA VPHRIHSTSR NVREEKTRSE ITFGQVKFDP PLRKETEPHH BACU001616/1-831 DDDDPEPLVA VPHRIHSTSR NVREEKTRSE INFGQVKFDP PLRKETEPHH ENSBTAP00000053863/1-894 DDDDPEPLVA VPHRIHSTSR NVREEKTRSE INFGQVKFDP PLRKETEPHH 351 400 ENSTTRP00000001002/1-881 ELPDSDDFLD SSEEIYYTAR SNLDLQLEYG QGHQSSYFLG ANK------- bmy_07467T0/1-691 E--------- ---------- --LDLQLEYG QGHQSSYFLG ANNFKKAIEF ENSP00000263881/1-894 ELPDSDGFLD SSEEIYYTAR SNLDLQLEYG QGHQGGYFLG ANK------- BACU001616/1-831 ELPDSDDFLD SSEEIYYTAR SNLDLQLEYG QGHQSSYFLG ANK------- ENSBTAP00000053863/1-894 ELPDSDGFLD SSEEVYYTAR SNLDLQLEYG QGHQSSYFLG ANK------- 401 450 ENSTTRP00000001002/1-881 ---------- ---------- -------SLL KSVEEELHQR GHVAHLEDDE bmy_07467T0/1-691 LMLEEYNIGG MLRELAVKRS KGTSGMPSLL KSVEEELHQR GHVAHLEDDE ENSP00000263881/1-894 ---------- ---------- -------SLL KSVEEELHQR GHVAHLEDDE BACU001616/1-831 ---------- ---------- -------SLL KSVEEELHQR GHVAHLEDDE ENSBTAP00000053863/1-894 ---------- ---------- -------SLL KSVEEELHQR GHVAHLEDDE 451 500 ENSTTRP00000001002/1-881 GDDDESKHST MKAKVPPPLP PKPKSIFIPQ ESHSTEDDNQ GTIKRCPTSE bmy_07467T0/1-691 GDDDESKHST MKAKVPPPLP PKPKSIFIPQ ETHSTEDDNQ GTIKRCPTSE ENSP00000263881/1-894 GDDDESKHST LKAKIPPPLP PKPKSIFIPQ EMHSTEDENQ GTIKRCPMSG BACU001616/1-831 GDDDESKHST MKAKVPPPLP PKPKSIFIPQ ETHSTEDDNQ GTIKRCPTSE ENSBTAP00000053863/1-894 GEDDESKNST MKAKVPPPLP PKPKSIFIPQ ETHSTEDDNQ GTIKRCPTSE 501 550 ENSTTRP00000001002/1-881 SPAKPSQVPP RPPPPRLPPQ KPVALGNGVS SFQLNGERDG SLYQQQNDHR bmy_07467T0/1-691 SPAKPSQVPP RPPPPRLPPQ KPVALGNGVS SFQLNGERDG SLYQQQNDHR ENSP00000263881/1-894 SPAKPSQVPP RPPPPRLPPH KPVALGNGMS SFQLNGERDG SLCQQQNEHR BACU001616/1-831 SPAKPSQVPP RPPPPRLPPQ KPVALGNGVS SFQLNGERDG SLYQQQNDHR ENSBTAP00000053863/1-894 SPAKPSQVPP RPPPPRLPPQ KPVALGNGVN SFQLNGERDG SLYQQQNEYR 551 600 ENSTTRP00000001002/1-881 GTNLARKEKK DVPKPISNGL PPTPKVHMGA CFSKVFNGCP LKIHCATSWI bmy_07467T0/1-691 GTNLSRKEKK DVPKPISNGL PPTPKVHMGA CFSKVFNGCP LKIHCATSWI ENSP00000263881/1-894 GTNLSRKEKK DVPKPISNGL PPTPKVHMGA CFSKVFNGCP LKIHCASSWI BACU001616/1-831 GTNLSRKEKK DVPKPISNGL PPTPKVHMGA CFSKVFNGCP LKIHCATSWI ENSBTAP00000053863/1-894 GTNLSRKEKK DVPKPISNGL PPTPKVHMGA CFSKVFNGCP LKIHCATSWI 601 650 ENSTTRP00000001002/1-881 NPDTRDQYLI FGAEEGIYTL NLNELHETSM EQLFPRRCTW LYVMNNCLLS bmy_07467T0/1-691 NPDTR----- ---------- ---------- ---------- ---------- ENSP00000263881/1-894 NPDTRDQYLI FGAEEGIYTL NLNELHETSM EQLFPRRCTW LYVMNNCLLS BACU001616/1-831 NPDTRDQYLI FGAEEGIYTL NLNELHETSM EQLFPRRCTW LYVMNNCLLS ENSBTAP00000053863/1-894 NPDTRDQYLI FGAEEGIYTL NLNELHETSM EQLFPRRCTW LYVMNNCLLS 651 700 ENSTTRP00000001002/1-881 ISGKASQLYS HNLPGLFDYA RQMQKLPVSI PAHKLPDRIL PRKFAVSAKI bmy_07467T0/1-691 ---------- ---------- ---------- ---------- ---------- ENSP00000263881/1-894 ISGKASQLYS HNLPGLFDYA RQMQKLPVAI PAHKLPDRIL PRKFSVSAKI BACU001616/1-831 ISGKASQLYS HNLPGLFDYA RQMQKLPVSI PAHKLPDRIL PRKFAVSAKI ENSBTAP00000053863/1-894 ISGKASQLYS HNLPGLFDYA RQMQKLPVSI PAHKLPDRIL PRKFAVSAKI 701 750 ENSTTRP00000001002/1-881 PETKWCQKCC VVRNPYTGHK YLCGALQTSI VLLEWVEPMQ KFMLIKHIDF bmy_07467T0/1-691 ---------- -VRNPYTGHK YLCGALQTSI VLLEWVEPMQ KFMLIKHIDF ENSP00000263881/1-894 PETKWCQKCC VVRNPYTGHK YLCGALQTSI VLLEWVEPMQ KFMLIKHIDF BACU001616/1-831 PETKWCQKCC VVRNPYTGHK YLCGALQTSI VLLEWVEPMQ KFMLIKHIDF ENSBTAP00000053863/1-894 PETKWCQKCC VVRNPYTGHK YLCGALQTSI VLLEWVEPMQ KFMLIKHIDF 751 800 ENSTTRP00000001002/1-881 PIPCPLRMFE MLVVPEQEYP LVCVGVSKGR DFNQVVRFET VNPNSTSSWF bmy_07467T0/1-691 PIPCPLRMFE MLVVPEQEYP LVCVGVSKGR DFNQVVRFET VNPNSTSSWF ENSP00000263881/1-894 PIPCPLRMFE MLVVPEQEYP LVCVGVSRGR DFNQVVRFET VNPNSTSSWF BACU001616/1-831 PIPCPLRMFE MLVVPEQEYP LVCVGVSKGR DFNQVVRFET VNPNSTSSWF ENSBTAP00000053863/1-894 PIPCPLRMFE MLVVPEQEYP LVCVGVSKGR DFNQVVRFET VNPNSTSSWF 801 850 ENSTTRP00000001002/1-881 TESDTPQTSV THVTQLERDT ILVCLDCCIK IVNLQGRLKS SRKLSSELTF bmy_07467T0/1-691 TESDTPQTSV THVTQLERDT ILVCLDCCIK IVNLQGRLKS SRKLSSELTF ENSP00000263881/1-894 TESDTPQTNV THVTQLERDT ILVCLDCCIK IVNLQGRLKS SRKLSSELTF BACU001616/1-831 TESDTPQTSV THVTQLERDT ILVCLDCCIK IVNLQGRLKS SRKLSSELTF ENSBTAP00000053863/1-894 TESDTPQTSV THVTQLERDT ILVCLDCCIK IVNLQGRLKS SRKLSSELTF 851 900 ENSTTRP00000001002/1-881 DFQIESIVCL QDSVLAFWKH GMQGRSFRSN EVTQEISDST RIFRLLGSDR bmy_07467T0/1-691 DFQIESIVCL QDSVLAFWKH GMQGRSFRSN EVTQEISDST RIFRLLGSDR ENSP00000263881/1-894 DFQIESIVCL QDSVLAFWKH GMQGRSFRSN EVTQEISDST RIFRLLGSDR BACU001616/1-831 DFQIESIVCL QDSVLAFWKH GMQGRSFRSN EVTQEISDST RIFRLLGSDR ENSBTAP00000053863/1-894 DFQIESIVCL QDSVLAFWKH GMQGRSFRSN EVTQEISDST RIFRLLGSDR 901 950 ENSTTRP00000001002/1-881 ---------- ---------- ---------- ---------- --------VV bmy_07467T0/1-691 SASYETFENV PGLPGSWFWK VGQPTTPQQI AIYTSSRVMK TVTEKRCALT ENSP00000263881/1-894 ---------- ---------- ---------- ---------- -------VVV BACU001616/1-831 ---------- ---------- ---------- ---------- -------VVV ENSBTAP00000053863/1-894 ---------- ---------- ---------- ---------- -------VVV 951 1000 ENSTTRP00000001002/1-881 VESRPTDNLT ANS----NLY ILAG------ -----HENSY ----- bmy_07467T0/1-691 VNSREKEHYH CNINGCLNLY KSCSYLASVT CNLLWHETRW GNFLF ENSP00000263881/1-894 LESRPTDNPT ANS----NLY ILAG------ -----HENSY ----- BACU001616/1-831 LESRPTDNPT ANS----NLY ILAG------ -----HENSY ----- ENSBTAP00000053863/1-894 LESRPTDNPT ANS----NLY ILAG------ -----HENSY -----