KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:22:52 2014 Check: 00 .. Name: ENSP00000359329/1-632 Len: 656 Check: 7161 Weight: 1.00 Name: ENSBTAP00000053864/1-642 Len: 656 Check: 9676 Weight: 1.00 Name: ENSTTRP00000005676/1-627 Len: 656 Check: 5874 Weight: 1.00 Name: bmy_22492T0/1-613 Len: 656 Check: 7490 Weight: 1.00 Name: BACU010306/1-649 Len: 656 Check: 8006 Weight: 1.00 // 1 50 ENSP00000359329/1-632 MGIRGMLRAA VILLLIRTWL AEGNYPSPIP KFH-FEFSSA VPEVVLNLFN ENSBTAP00000053864/1-642 MSIRGMLRAA VFLLLIRTWL AEGSDLSSTP KFH-VELSST VPEVVLNLFD ENSTTRP00000005676/1-627 MGIRGMLRAA VLLLLIRTWL AEGNDLNPTP KFHFFELSST VPDVVLDLFN bmy_22492T0/1-613 MGIRGTLRAA VLLLLIGAWL AEGSDLKPAP KFH-FELSSA VPDVVLDLFK BACU010306/1-649 MGIRGTLRAA VLLLLVRAWL AEGNDLNPAP KFH-FELSSA VPDVVLDLFK 51 100 ENSP00000359329/1-632 CKNCANEAVV QKILDRVLSR YDVRLRPNFG GAPVPVRISI YVTSIEQISE ENSBTAP00000053864/1-642 CKNCANEATV HKILDRVLSN YDSRLRPNFG GTPVPVGVSI YVSSIEQISE ENSTTRP00000005676/1-627 XXXXXXEAMV HKILDRVLSK YDVRLRPNFG XXXXXXXXXX XXXXXXXXXX bmy_22492T0/1-613 CKNCANEAMV HKILDRVLSK YDVRLRPNFG ---------- ---------- BACU010306/1-649 CKNCANEAMV HKILDRVLSK YDVRLRPNFG GAPVPVGVSI YVSSIEQISE 101 150 ENSP00000359329/1-632 MNMDYTITMF FHQTWKDSRL AYYETTLNLT LDYRMHEKLW VPDCYFLNSK ENSBTAP00000053864/1-642 VTMDYTITMF FHQTWKDPRL AYHETNLNLT LDYRLFEKLW VPDCYFLNSK ENSTTRP00000005676/1-627 XXXDYTITMF FHQTWKDPRL AYYETNLNLT LDYQMLEKFW VPDCYFLNSK bmy_22492T0/1-613 ---------- ------DPRL AYYETNLNLT LDYQLLEKLW VPDCYFLNSK BACU010306/1-649 MTMDYTITMF FHQTWKDPRL AYHETNLNLT LDYQMLEKLW VPDCYFLNSK 151 200 ENSP00000359329/1-632 DAFVHDVTVE NRVFQLHPDG TVRYGIRLTT TAACSLDLHK FPMDKQACNL ENSBTAP00000053864/1-642 EAFVHDATVE NRVFQLHPDG TVRYGIRLTT TAACSMNLEK FPLDKQTCKL ENSTTRP00000005676/1-627 DAFVHDVTVE NRVFQLQPDG TVRYGIRLTT TAACSMNLQK FPLDKQTCKL bmy_22492T0/1-613 DAFVHDVTVE NRVFQLQPDG TVRYGIRLTT TAACSMNLQK FPLDKQTCKL BACU010306/1-649 DAFVHDVTVE NRVFQLQPDG TVRYGIRLTT TAACSMNLQK FPLDKQTCKL 201 250 ENSP00000359329/1-632 VVESYGYTVE DIILFWDDNG NAIHMTEELH IPQFTFLGRT ITSKEVYFYT ENSBTAP00000053864/1-642 EVESYGYTVD DILLYWEGSG NAVQGTEKLH IPQFSFLGKT ISTKEVFFYT ENSTTRP00000005676/1-627 EVESYGYTVE DILLYWEGNG NAIQGTEKLH IPQFSFLGKT MTSKEVFFYT bmy_22492T0/1-613 EVESYGYTVE DILLYWEGNG NAIQGTEKLH IPQFSFLGKT MTSKEVFFYT BACU010306/1-649 EVESYGYTVE DILLYWEGNG NAIQGTEKLH IPQFSFLGKT MTSKEVFFYT 251 300 ENSP00000359329/1-632 GSYIRLILKF QVQREVNSYL VQVYWPTVLT TITSWISFWM NYDSSAARVT ENSBTAP00000053864/1-642 GSYVRLILRF LVKREVTSYL VQIYWPSVLT TVVSWISFWM NYESSAARVT ENSTTRP00000005676/1-627 GSYVRLIVRF LVKREVTSYL VQIYWPTVLT TVVSWISFWM NYESSAARVT bmy_22492T0/1-613 GSYVRLIVRF LVKREVISYL VQIYWPTVLT TVVSWISFWM NYESSAARVS BACU010306/1-649 GSYVRLIVRF LVKREVTSYL VQIYWPTVLT TVVSWISFWM NYESSAARVS 301 350 ENSP00000359329/1-632 IGLTSMLILT TIDSHLRDKL PNISCIKAID IYILVCLFFV FLSLLEYVYI ENSBTAP00000053864/1-642 VGLTSMLILN SINSHLRNQF PQFSCIKAID IYMVVCFFFV FLSLVEYVYI ENSTTRP00000005676/1-627 VGLTSMLILN AINSHLRNKL PQFSCIKAID IYMVVCFFFV FLSLLEYVYI bmy_22492T0/1-613 VGLTSMLILN AINSHLRNKL PQFSCIKAID IYMVVCFFFV FLSLLEYVYI BACU010306/1-649 VGLTSMLILN AINSHLRNKL PQFSCIKAID IYMVVCFFFV FLSLLEYVYI 351 400 ENSP00000359329/1-632 NYLFYS-RGP RRQPRRHRRP RRVIARYRYQ QVVVGNVQDG LINVEDGVSS ENSBTAP00000053864/1-642 NYLFYNRRGS RHSQRQLRRA LRVMERYRYR EVIVHTAFND QVHLEDETDS ENSTTRP00000005676/1-627 NYVFYSRRGP QRSQRQLRRA QRVMTRYRYQ EAM----QDD QLHIEDENGS bmy_22492T0/1-613 NYLFYSRRGP QRSQRQLRRA QRVMASYRYQ EAM----QDD QFHIEDENGS BACU010306/1-649 NYLFYSRRGP QRSQRQLRRA QRVMARYRYQ EAM----QDD QFHIEDENGS 401 450 ENSP00000359329/1-632 LPITPAQAPL ASPESLGSLT STSEQAQLAT SESLSPLTSL SGQAPLATGE ENSBTAP00000053864/1-642 PPSSPWWAGL ASPESLGSLA SLTKEAPLAS SESLSSLSSL SDGASLATTE ENSTTRP00000005676/1-627 PPSRRVWAGL ASPESLGSLA SISEQAPLAS SESLSSLSSL SDQSWLATAE bmy_22492T0/1-613 PPSRRVWAGL ASPESLGSLA SISEQAPLAS SESLSSLSSL SDQSWLATAE BACU010306/1-649 PPSRRVWAGL ASQESLGSLA SISEQAPLAS SESLSSLSSL SDQSWLATAE 451 500 ENSP00000359329/1-632 SLSDLPSTSE QARHSYGVRF NGFQADDSIF PTEIRNRVEA HGHGVTHDH- ENSBTAP00000053864/1-642 SLSDLPSTSE QVVHDDGIRV NGIDVDNSVV PTEIRNLAET H------DPE ENSTTRP00000005676/1-627 SLSDLPSTSE QAVPSYGICI NDIDIDDSVI PTEIRNCAEA HGRAETCDP- bmy_22492T0/1-613 SLSDLPSTSE QAVPSYGIHV NGIDTDDSVI PTEIRNRAEA HGRAETXDP- BACU010306/1-649 SLSDLPSTSE QAVPSYGIHV NGIDTDDSVI PTEIRNRAEA HGRAETCDP- 501 550 ENSP00000359329/1-632 EDSNESLSSD ERHGHGPSGK PMLHHGEKGV QEAGWDLDDN ND-------- ENSBTAP00000053864/1-642 EDPGESSDSD ESEDNGPSKK RLLVHGQRHV QEATYELQEI CN-------T ENSTTRP00000005676/1-627 EDPEESSNSD ESQDHGPSRK HLLVHSQRCV QEANYNLEEI HN-------- bmy_22492T0/1-613 EDPEESSNSN ESQDHGPSRK HLLVHGRRCV QEANYDLEEI RNTLDEIHST BACU010306/1-649 EDPEESSDSN ESQDHGPSRK HLLVHGRRRV QEANYELEEI RNTLDEIHST 551 600 ENSP00000359329/1-632 ---------- ---KSDCLAI KEQFKCDTNS TWGLNDDELM AHGQEKDSSS ENSBTAP00000053864/1-642 LRDIHSLPDD VIVESGYPDL EEQLKRKVDS TGSLHSDDFM DFDGDKESNS ENSTTRP00000005676/1-627 ---------- ---KSGCLDL EKQLKYNVDS TCSLYGN-VM GFDP-QNTNS bmy_22492T0/1-613 LHDIRSLPDD VRVESGYLDL EKQLKCNVDS TWSLYGN-VM GFDPDKNSNS BACU010306/1-649 LHDIRSLPDD VRVESGYLDL EKQLKCNVDS TWSLYGN-VM GFDPDKNSNS 601 650 ENSP00000359329/1-632 ESEDSCPPSP GCSFTEGFSF DLFNPDYVPK VDKWSRFLFP LAFGLFNIVY ENSBTAP00000053864/1-642 ESDNSFPPSP GCSFSKGFSS DLFHPDYIPK VDQCCRLLFP LAFVVFNIVY ENSTTRP00000005676/1-627 ESDDS-PPSP ECSFSKGFSS KLFHPDYIPK VDRCSRLLFP LAFVVFNIVY bmy_22492T0/1-613 ESDDGSPPSP GCSFSKGFSS KLFHPDYIPK VDRCSRLLFP LAFVVFNIVY BACU010306/1-649 ESDDGSPPSP GCSFSKGFSS KLFHPDYIPK VDRCSRLLFP LAFVVFNIVY 651 700 ENSP00000359329/1-632 WVYHMY ENSBTAP00000053864/1-642 WVYHIY ENSTTRP00000005676/1-627 WVYHMY bmy_22492T0/1-613 WVYHIY BACU010306/1-649 WVYHIY