KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:02 2014 Check: 00 .. Name: ENSP00000344996/1-673 Len: 930 Check: 663 Weight: 1.00 Name: ENSBTAP00000053902/1-745 Len: 930 Check: 4860 Weight: 1.00 Name: ENSTTRP00000002221/1-311 Len: 930 Check: 7843 Weight: 1.00 Name: bmy_04836T0/1-922 Len: 930 Check: 3767 Weight: 1.00 Name: BACU018612/1-322 Len: 930 Check: 9241 Weight: 1.00 // 1 50 ENSP00000344996/1-673 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053902/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 MRLPPPGPNQ LDQLSQCPPA APPTPTPDSQ VTASRAPFGK RVVGPGLRDQ BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000344996/1-673 ---------- ---------- --MAESSLYR QRLEVIA--- ---------- ENSBTAP00000053902/1-745 -------MAL QSHVWSLATP MPMAESSLYR QRLEVIA--- ---------- ENSTTRP00000002221/1-311 ---------- ---------- ---------- --LTLFL--- ---------- bmy_04836T0/1-922 NVGFWAEMAL QSQVWSPATP MPMAESSLYR QRLEVIAGLS SPLPARGPDL BACU018612/1-322 ---------- ---------- ---------- --LTLFL--- ---------- 101 150 ENSP00000344996/1-673 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053902/1-745 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 CSAPGAACSP GSPGSPGSPR EPPGARRRRE GGSGEGGPAR PHSARGQLRV BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000344996/1-673 ----EKRRLQ EEIRAARREV EEEKLRVERL KRKSLRERWL MDGAAAVPEP ENSBTAP00000053902/1-745 ----EKRRLQ EEIRAARREL EEEKLRVERL KRKSLRERWL MDGAAEEPER ENSTTRP00000002221/1-311 ----PSL--- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 LCAQEKRRLQ EEIRAARREL EEEKLRVERL KRKSLRERWL MDGAAEEPER BACU018612/1-322 ----PSL--- ---------- ---------- ---------- ---------- 201 250 ENSP00000344996/1-673 SEDPTSKDPQ SPEGQAQARI RNLEDSLFTL QSQLQLLQSA STGAQHKPSG ENSBTAP00000053902/1-745 PQDPTSQDPQ SPEDQAQARI RNLEDSLFTL QSQLQLLQSA STGAQHKPSG ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 PQDPASQDPQ SPEDQAQARI RNLEGSLFTL QSQLQLLQSA STGAQHKPAG BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000344996/1-673 RPSWRRQGHR PLSQSIVEAG SV-------- ---------- ---------- ENSBTAP00000053902/1-745 RPTWRRQGHR PLSQPNVESG PA-------- ---------- ---------- ENSTTRP00000002221/1-311 ------QGHR PLSQPTVEAG PA-------- ---------- ---------- bmy_04836T0/1-922 RPTWRRQGHR PLSQPTVEAG PAGGCFEVWG SQEEGPESHS VVPSLLSPSP BACU018612/1-322 ------QGHR PLSQPTVEAG PE-------- ---------- ---------- 301 350 ENSP00000344996/1-673 ----GQTDLN KRASLPAGLV GTPPESPSEP REDVLGFLPG PRQVPGAAGD ENSBTAP00000053902/1-745 ----GKTDLN KRASLPAGPV GAYPESPSEP RTEAAGVPAA PRRVPGAAGT ENSTTRP00000002221/1-311 ----DQTDLN KSASIPAGPV -----DPSKS RDESVGVPPA PRRIPGAAVA bmy_04836T0/1-922 LTPPGQTDIN KRASIPAGPX GTYPESPSKS GDEAVGAPPA PRRIPGAAGP BACU018612/1-322 ----GQTDLN KRASIPAGPV GTYPESPSKS GDEAVGAPPA PRRIPGAAGP 351 400 ENSP00000344996/1-673 SSEANGPCPS PIPTPEQGLS QRAVPSEGRV GEAKGGGVVS VVWEGLRATE ENSBTAP00000053902/1-745 SSEANGPCPG SSPPLEQEPS QGVLTPEGAV NEAKGGGMVK VVWEGLRPTE ENSTTRP00000002221/1-311 SSEANGPCPG SSPPPEQAPS QGVAASDGGV NEAKGEGTVK VVWEGLRATE bmy_04836T0/1-922 SSEANGPCPG SSPPPEQEPS QGGAASDGGV NEAKGGGMVK VVWEGLRATE BACU018612/1-322 SSEANGPCPG SSPPPEQEPS QGGAASDGGV NEAKGGGMVK VVWEGLRATE 401 450 ENSP00000344996/1-673 DCATGATGPE LEAKVEEVVL EAIGDRKGAG SLELPAWVKE DRGIVEVVWE ENSBTAP00000053902/1-745 DCAIGATGLE LEAKVEEMVL EAIGDRQEAS RPELPSWVKE DRAITEVVWE ENSTTRP00000002221/1-311 DCTTGPTGPE LEAKVEEMVM EAIGDRQEAG RLELPSWVRE DRDIVEVVWE bmy_04836T0/1-922 DCTAGATGPE LEAKVEEMVM EAIGDRQEAG RPELPSWVRE DRGIVEVVWE BACU018612/1-322 DCTAGATGPE LEAKVEEMVM EAIGDRQKAG RPELPLWVRE DRGIVEVVWE 451 500 ENSP00000344996/1-673 GVG---GSDA EAMGEIGRVP EVVQTSSPRL QERLEAAASI EGEDVPQGSP ENSBTAP00000053902/1-745 GMGGTEGSDL EAMAEAGRGP EAVQTSSLGL REGSGGTAP- -GQGAPRSSP ENSTTRP00000002221/1-311 GVGGTEGSDS EAMGEAGRGL EAAQTSSLRL QEGPGGAASG EGEGAPRGSA bmy_04836T0/1-922 GVGGTEGSDS GATGEAGRGL EAAQTSSLRL QEGP---ASG EGEGAPRGSP BACU018612/1-322 GVGGTEGSDS EATGEAGRGL EAAQTSSPRL QEGP---ASG EGEGAPRGSP 501 550 ENSP00000344996/1-673 EGDGQGGSGG EEGSFIWVER VTLSEEWEEL LVEGLEGPEV AGRERGDESP ENSBTAP00000053902/1-745 DGDGQGVF-G EEGSFIWVER VTLSEEWEEL EVEGLEGPKA LGREEEDESP ENSTTRP00000002221/1-311 DGDGQGGFGG EEGSFIWVER VTLNEQWEEL GLEGLEGPKA LGREGKDESP bmy_04836T0/1-922 DGDGQGGFGG EEGSFIWVER VTLSEEWEEL VVEGLEGPKA LGREGKBESP BACU018612/1-322 DGDGQGGFGG QEGSFIWVER VTLSEEWEEL VVEGVEGPKA LEREGKDESP 551 600 ENSP00000344996/1-673 LGAEGAKTGG GEETWEAEKR KAE--ESMGI -GSEEKPGTG RDEAEMSPVV ENSBTAP00000053902/1-745 LGAEGR---G EEETWEAERR RVEGPEGAEK RGSEGKAGTE PEGAEMSLAL ENSTTRP00000002221/1-311 LGAAEA---- -EETWEAERR WAE--ELAGK RGKRER-GEE PLG------V bmy_04836T0/1-922 PGAGGR---G GEETWEVERR WAX--ESAGK RGSEGKAGXE PEGAEMSLVV BACU018612/1-322 PGAGGR---G GEETWEVERR WAE--ESAGK RGSEGKAGAE PEGAEMSLVV 601 650 ENSP00000344996/1-673 ERKGGEKKLE ---------- ---------- --LESRGSAE KLGTEREGGE ENSBTAP00000053902/1-745 ERKGSPDSME PERR------ ---------- --AERKEVEG PLGAERGRDE ENSTTRP00000002221/1-311 QQKGGEEKLE ---------- ---------- ---------- ---------- bmy_04836T0/1-922 ERKGSEESLE PERRGVEEKV ETEMGGGDEP LSAERKEVEG PLRAERERGE BACU018612/1-322 ERKGSEESLE ---------- ---------- ---------- ---------- 651 700 ENSP00000344996/1-673 EPLGIERK-- ---------- ---------- ---------- ---------V ENSBTAP00000053902/1-745 KPLGVEQKGG EEKLEAIQEP LAAEREEGEE SLAAERIGSE KPLEEKEKGD ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 EPLGVEQKGG EEKLEAIEEP LVTERKEGEE SLMVERIGGE EALEGKEKGD BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000344996/1-673 EGHLRAEKEG DEEKRGAEEE EVEEPLGVEK KGGEEEPEAT K--------- ENSBTAP00000053902/1-745 DKSQRVERMG DEEPLEAEKT GDEKPQKVEG TGGEELLEAE KTRDEKPQKV ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 EESLKVERTG GEQPSEAETK GGEESLKVER TGGEQPSEAE TKGDEEPLKV BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000344996/1-673 ------EPLE AERKGGEETL EAEKRGGEES LETEKTQGTE GDL--NLEQG ENSBTAP00000053902/1-745 ERTGGEEPSE VEKNEDEDSL KVERMGGEEP LQTEKTRSVE -----EEQRE ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 QRTGGEQPSE AETKGDEESQ KAERMAGEEP LQTEKTEGVE EDLSPEEQRE BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000344996/1-673 SREGSESQAE EMNEAGPPLE ANTETRPEKE GPQPQEKPVG ALEEEGVKPQ ENSBTAP00000053902/1-745 SEEEKECQAE DVSEAGAPPE AKEAPRPEDE RQQPQEKQEG SPEAEAVKPQ ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 SGGGKECQAE EVSEEVAPLG AKEEPRPEEE GQQPQEKQEA SPEAEAVKPQ BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000344996/1-673 TAAEGQGPLG DATPLLAETP APEQPAECQP LLQGEGPSAN PSAHPVPTYA ENSBTAP00000053902/1-745 TPAEGQDPTG DATPLLAEMS AQDQPAECQP LLQMEGPRAN PSAHPMPTYA ENSTTRP00000002221/1-311 ---------- ---------- ---------- ---------- ---------- bmy_04836T0/1-922 TSDEGQDPSG DATPLLAETP AQEQPAECQP LLQVEEPRAN PSAHIVPTYA BACU018612/1-322 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000344996/1-673 PARQPEPSAP TEGEEASGPK QKTCQCCAVM ENSBTAP00000053902/1-745 PARQPEPSAP PEGEEASGPK QKTCQCCAVM ENSTTRP00000002221/1-311 ---------- ---------- ---------- bmy_04836T0/1-922 PARQPEPSAP PEGEEASGPK QKTCQCCAVM BACU018612/1-322 ---------- ---------- ----------