KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:03 2014 Check: 00 .. Name: bmy_07106T0/1-378 Len: 673 Check: 4823 Weight: 1.00 Name: ENSBTAP00000053914/1-263 Len: 673 Check: 7782 Weight: 1.00 Name: ENSP00000429473/1-645 Len: 673 Check: 9840 Weight: 1.00 Name: BACU005443/1-317 Len: 673 Check: 4571 Weight: 1.00 Name: ENSTTRP00000001427/1-611 Len: 673 Check: 5841 Weight: 1.00 // 1 50 bmy_07106T0/1-378 ---------- ---------- -----MDERF NKWLLTPVLT LLFVVIMYQY ENSBTAP00000053914/1-263 ---------- ---------- -----MDERF NKWLLTPVLT LLFVVIMYQY ENSP00000429473/1-645 MALPACAVRE FEPPRQPERG APVRTTCPRR HSRVEAELAA SRPGSVAASV BACU005443/1-317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001427/1-611 ---------- ---------- ---------- ----LESVSK TRRPRSSASV 51 100 bmy_07106T0/1-378 VSPSCTSSCA NFGEQP---- -------RAG EAGQPAAPGP ARPAQAPLED ENSBTAP00000053914/1-263 VSPSCSSSCA NFGEQP---- -------RAG EAGQPAAPGP ARRAQAPPED ENSP00000429473/1-645 RAGPPRGVSH GFHTRPLLDK PRKASSSLAG AACAPLFALL SRGRRRRMHV BACU005443/1-317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001427/1-611 RAGPPRGVSR GFNSQPLLDE PLKL-SSLAG AARAPLFALL ARGRRRRMHD 101 150 bmy_07106T0/1-378 WERRPQLPPP PQGPPE---- ---------- --------GP RGAAAPEDED ENSBTAP00000053914/1-263 WERRPQLPPP PRGPPE---- ---------- --------GP RGPAAPEDED ENSP00000429473/1-645 LRRRWDLGSL CRALLTRGLA ALGHSLKHVL GAIFSKIFGP MASVGNMDEK BACU005443/1-317 ----MHL--- ---------- ---------- ---------- ---------- ENSTTRP00000001427/1-611 LRRRWDLGSL CRALLTRGLA ALGHSLKHVL GAIFSKIFGP LASVGNMDEK 151 200 bmy_07106T0/1-378 EE-------- ---------- ---PGDPEEE EEAEEEEEE- PDPEAPENGS ENSBTAP00000053914/1-263 EE-------- ---------- ---PGEPEDE EEEAEEEEEE PDPEAPENGS ENSP00000429473/1-645 SNKLLLALVM LFLFAVIVLQ YVCPGTECQL LRLQAFSSPV PDPYRSEDES BACU005443/1-317 ---------- ---------- ---------- ---------- PD-------- ENSTTRP00000001427/1-611 SNKLLLALVM LFLFAVIVLQ YVCPGTECQL LRLQAFSSPM PDPYRSEDES 201 250 bmy_07106T0/1-378 LPRFVPRFNF TLKDLTRFVD FNIKGRDVIV FLHIQKTGGT TFGRHLVKNI ENSBTAP00000053914/1-263 LPRFVPRFNF TPKDLTRFVD FNIKGRDVIV FLHIQKTGGT TFGRHLVKNI ENSP00000429473/1-645 SARFVPRYNF TRGDLLRKVD FDIKGDDLIV FLHIQKTGGT TFGRHLVRNI BACU005443/1-317 -STYVTRI-- ---------- ---------- ---------- ---------- ENSTTRP00000001427/1-611 SARFVPRYNF SRGDLLRKVD FDIKGDDLIV FLHIQKTGGT TFGRHLVRNI 251 300 bmy_07106T0/1-378 RLEQPCSCKA GQKKCTCHRP GKKETWLFSR FSTGWSCGLH ADWTELTNCV ENSBTAP00000053914/1-263 RLEQPCSCKA GQKKCTCHRP GKKETWLFSR FSTGWSCGLH ADWTELTNCV ENSP00000429473/1-645 QLEQPCECRV GQKKCTCHRP GKRETWLFSR FSTGWSCGLH ADWTELTSCV BACU005443/1-317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001427/1-611 QLEQPCECRV GQKKCTCHRP GKRETWLFSR FSTGWSCGLH ADWTELTSCV 301 350 bmy_07106T0/1-378 PAIMEKK--- ---------- ---------- ---------- ---------- ENSBTAP00000053914/1-263 PAIMEKK--- ---------- ---------- ---------- ---------- ENSP00000429473/1-645 PSVVDGKRDA RLRPSRWRIF QILDAASKDK RGSPNTNAGA NSPSSTKTRN BACU005443/1-317 ---------- ---PDRWPLF FV-------- ---------- ---------- ENSTTRP00000001427/1-611 PAVVDSKRDA RLRPSRWRIF QILDAAXXXX XXXXXXXXXX XXXXXXXXXX 351 400 bmy_07106T0/1-378 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053914/1-263 ---------- ---------- ---------- ---------- ---------- ENSP00000429473/1-645 TSKSGKNFHY ITILRDPVSR YLSEWRHVQR GATWKASLHV CDGRPPTSEE BACU005443/1-317 ----HRNFHY ITILRDPVSR YLSEWRHVQR GATWKASLHV CDGRPPTSEE ENSTTRP00000001427/1-611 XXXXXXNFHY ITILRDPVSR YLSEWRHVQR GATWKASLHV CDGRPPTSEE 401 450 bmy_07106T0/1-378 ---------- ---------D CPRNHSHTSV DTPGKIILLL IPAELHMINL ENSBTAP00000053914/1-263 ---------- ---------D CPRNHSHTR- ---------- ---------- ENSP00000429473/1-645 LPSCYTGDDW SGCPLKEFMD CPYNLANNR- -------QVR MLSDLTLV-- BACU005443/1-317 LPSCYTGDDW SGCPLKEFRD FPYNLANNR- -------QVR MLSDLTLV-- ENSTTRP00000001427/1-611 LPSCYTGDDW SGCPLKEFMD CPYNLANNR- -------QVR MLSDLTLV-- 451 500 bmy_07106T0/1-378 LSKGSNDPPY GRGSFYIKIT VVNKGIEFFA LCSRCNIKCN IPVVSLSVNT ENSBTAP00000053914/1-263 ---------- ---------- ---------- ---------- ---------- ENSP00000429473/1-645 ---------- --GCYNLSVM PEKQRNKVLL ESAKSNLK-H MAFFGLTEFQ BACU005443/1-317 ---------- --GCYNLSVM PEKQRNKVLL ESAKSNLK-H MAFFGLTEFQ ENSTTRP00000001427/1-611 ---------- --GCYNLSVM PEKQRNKVLL ESAKSNLK-H MAFFGLTEFQ 501 550 bmy_07106T0/1-378 HNSQLVFFTF IHTGPMEHFL VYCPSGSRML ---LSVMMLV VGVDVIE--- ENSBTAP00000053914/1-263 ---------- ---------- -YCPPAASS- ---------- ---------- ENSP00000429473/1-645 RKTQYLFEKT FNMNFISPFT QYNTTRASSV EINEEIQKRI EGLNFLDMEL BACU005443/1-317 RKTQYLFEKT FNMNFISPFT QYNTTRASSV EINEEIQKHI EGLNFLDMEL ENSTTRP00000001427/1-611 RKTQYLFEKT FNMNFISPFT QYNTTRASSV EINEEIQKRI EGLNFLDMEL 551 600 bmy_07106T0/1-378 ---------- ---------- -----EATVM NSFCDVICYE NRFSVCGAGL ENSBTAP00000053914/1-263 ---------- ---------- ---------- ---------- -RFRPPSLPL ENSP00000429473/1-645 YSYAKDLFLQ RYQFMRQKEH QEARRKRQEQ RKFLKGRLLQ THFQSQGQGQ BACU005443/1-317 YSYAKDLFLQ RYQFMRQKEH QEARRKRQEQ RKFLKGRFLQ THFQSQSQGQ ENSTTRP00000001427/1-611 YSYAKDLFLQ RYQFMRQKEH QEARRKRQEQ RKFLKGRFLQ THFQSQSQGQ 601 650 bmy_07106T0/1-378 S--------- ---------- ---------- ---------- ---------- ENSBTAP00000053914/1-263 QPIPPPHP-- ---------- ---------- ---------- ---------- ENSP00000429473/1-645 SQNPNQNQSQ NPNPNANQNL TQNLMQNLTQ SL----SQKE NRESPKQNSG BACU005443/1-317 SQNLSQNPSQ APNLNANQNV TQNLIPNLTQ SLGQNPSPKE NRESQKQNPG ENSTTRP00000001427/1-611 SQNPSQNPSQ TPNLNASQNV TQNLIPNLIQ NL----SPKE NWESQKQSPG 651 700 bmy_07106T0/1-378 ---------- ---------- --- ENSBTAP00000053914/1-263 ---------- ---------- --- ENSP00000429473/1-645 KEQND-NTSN GTNDYIGSVE KWR BACU005443/1-317 QEQSDGNTSN GTHDYIGSVE KWR ENSTTRP00000001427/1-611 QEQSDGSTSN GTHDYIGSVE KWR