KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:04 2014 Check: 00 .. Name: ENSP00000376911/1-433 Len: 437 Check: 4740 Weight: 1.00 Name: ENSBTAP00000053922/1-433 Len: 437 Check: 6309 Weight: 1.00 Name: ENSTTRP00000001439/1-433 Len: 437 Check: 2851 Weight: 1.00 Name: bmy_08703T0/1-415 Len: 437 Check: 1366 Weight: 1.00 Name: BACU010723/1-437 Len: 437 Check: 8457 Weight: 1.00 // 1 50 ENSP00000376911/1-433 MVWKVAVFLS VALGIGAVPI DDPEDGGKHW VVIVAGSNGW YNYRHQADAC ENSBTAP00000053922/1-433 MIWEVTVLLS LVLGTGAVPL EDPEDGGKHW VVIVAGSNGW YNYRHQADAC ENSTTRP00000001439/1-433 MIWEVAVLLS LALGAGAIPV DDPEDGGKHW VVIVAGSNGW YNYRHQXXXX bmy_08703T0/1-415 MIWEVAVLLX LVLGVGAIPV DDPEDGGKHW VVIVAGSNGW YNYRHQADAC BACU010723/1-437 MIWEVAVLLS LVLGVGAIPV DDPEDGGKHW VVIVAGSNGW YNYRHQADAC 51 100 ENSP00000376911/1-433 HAYQIIHRNG IPDEQIVVMM YDDIAYSEDN PTPGIVINRP NGTDVYQGVP ENSBTAP00000053922/1-433 HAYQIVHRNG IPDEQIIVMM YDDIANSEDN PTPGIVINRP NGSDVYQGVL ENSTTRP00000001439/1-433 XXXXXXXXXX XXXXXXIVMM YDDIANSEDN PTPGIVINRP NGSDVYEGVL bmy_08703T0/1-415 HAYQIVHRNG IPDEQIIVMM YDDIANSEDN PTPGIVINRP NGSDVYKGVL BACU010723/1-437 HAYQIVHRNG IPDEQIIVMM YDDIANSEDN PTPGIVINRP NGSDVYKGVL 101 150 ENSP00000376911/1-433 KDYTGEDVTP QNFLAVLRGD AEAVKGIGSG KVLKSGPQDH VFIYFTDHGS ENSBTAP00000053922/1-433 KDYTGEDVTP KNFLAVLRGD AEAVKGVGSG KVLKSGPRDH VFVYFTDHGA ENSTTRP00000001439/1-433 KDYTGEDVTP QNFLAVLRGD AEAVEGKGSG KVLKSGPRDH VFVYFTDHGA bmy_08703T0/1-415 KDYTGEDVTP QNFLAVLRGD AEAVKGKGSG KVLKSGPRDH VF-------- BACU010723/1-437 KDYTGEDVTP QNFLAVLRGD AEAVKGKGSG KVLKSGPRDH VFVYFTDHGA 151 200 ENSP00000376911/1-433 TGILVFPNED LHVKDLNETI HYMYKHKMYR KMVFYIEACE SGSMMNHLPD ENSBTAP00000053922/1-433 TGILVFPNED LHVKDLNETI RYMYEHKMYQ KMVFYIEACE SGSMMNHLPP ENSTTRP00000001439/1-433 TGILVFPNDD LHVKDLNETI HYMHKHKKYQ KMVFYIEACE SGSMMSHLPP bmy_08703T0/1-415 ---------- LHVKDLNETI HYMHKHKRYQ KMVFYIEACE SGSMMSHLPP BACU010723/1-437 TGILVFPNDD LHVKDLNETI HYMHKHKRYQ KMVFYIEACE SGSMMSHLPP 201 250 ENSP00000376911/1-433 NINVYATTAA NPRESSYACY YDEKRSTYLG DWYSVNWMED SDVEDLTKET ENSBTAP00000053922/1-433 DINVYATTAA NPRESSYACY YDEQRSTFLG DWYSVNWMED SDVEDLTKET ENSTTRP00000001439/1-433 NIDVYATTAA NPRESSYACY YDEARSTFLG DWYSVNWMED SDVEDLTKET bmy_08703T0/1-415 NINVYATTAA NPKESSYACY YDEARSTFLG DWYSVNWMED SDVEDLTKET BACU010723/1-437 NIDVYATTAA NPRESSYACY YDEARSTFLG DWYSVNWMED SDVEDLTKET 251 300 ENSP00000376911/1-433 LHKQYHLVKS HTNTSHVMQY GNKTISTMKV MQFQGMKRKA SSPVPLPPVT ENSBTAP00000053922/1-433 LHKQYQLVKS HTNTSHVMQY GNKSISAMKL MQFQGLKHQA SSPISLPAVS ENSTTRP00000001439/1-433 LHKQYQLVKS HTNTSHVMQY GNKSISAMKL MQFQGLKHKA SSPISLPPVK bmy_08703T0/1-415 LHKQYQLVKS HTNTSHVMQY GNKSISAMKL MQFQGLKHKA SSPISLPRVK BACU010723/1-437 LHKQYQLVKS HTNTSHVMQY GNKSISAMKL MQFQGLKHKA SSPISLPRVK 301 350 ENSP00000376911/1-433 HLDLTPSPDV PLTIMKRKLM NTNDLEESRQ LTEEIQRHLD ARHLIEKSVR ENSBTAP00000053922/1-433 RLDLTPSPEV PLSIMKRKLM STNDLQESRR LVQKIDRHLE ARNIIEKSVR ENSTTRP00000001439/1-433 HLDLTPSPEV PLTIMKRKLM STNDLHESRR LVKKIDRQLE VRNVIEKSVR bmy_08703T0/1-415 HLDLTPSPEV PLTIMKRKLM STNDLQESRR LVKKIDRQLE VRNVIEKSVX BACU010723/1-437 HLDLTPSPEV PLTIMKRKLM STNDLQESRR LVKKIDRQLE VRNVIEKSVW 351 400 ENSP00000376911/1-433 KIVSLLAASE AEVEQLLSER APLTGHSCYP EALLHFRTHC FNWHSPTYEY ENSBTAP00000053922/1-433 KIVTLVSGSA AEVDRLLSQR APLTEHACYQ TAVSHFRSHC FNWHNPTYEY ENSTTRP00000001439/1-433 KIVALISGSD AEVDRLLSQR APLTAHDCYQ AAVSHFRTHC FNWHNPTYEY bmy_08703T0/1-415 KIVALISGSD AEVDRLLSQR APLTAHDCYQ AAVSHFRTHC FNWHNPTYEY BACU010723/1-437 KIVALISGSN AEVDRLLSQR APLTAHDCYQ AAVSHFRTHC FNWHNPTYEY 401 450 ENSP00000376911/1-433 ALRHLYVLVN LCEKPYPLHR IKLSMDHVCL GHY---- ENSBTAP00000053922/1-433 ALRHLYVLVN LCENPYPIDR IKLSMNKVCH GYY---- ENSTTRP00000001439/1-433 ALRHLYVLVN LCENPYPIDR IKLSMNKVCL GYY---- bmy_08703T0/1-415 ALRHLYVLVN LCENPYPIDR IKLSMNKVCL GYY---- BACU010723/1-437 ALRHLYVLVN LCENPYPIDR TVTYFVTLLL SYYLSSL