KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:11 2014 Check: 00 .. Name: ENSBTAP00000053945/1-292 Len: 295 Check: 9820 Weight: 1.00 Name: BACU018250/1-281 Len: 295 Check: 4564 Weight: 1.00 Name: bmy_06381T0/1-191 Len: 295 Check: 7793 Weight: 1.00 Name: ENSTTRP00000005164/1-227 Len: 295 Check: 1115 Weight: 1.00 // 1 50 ENSBTAP00000053945/1-292 MVVLAPAWSP TTSLLLLLLL LSPGLQGTPD CSFRHSPISS TFAIKIGKLS BACU018250/1-281 ---------P QTS-LLLLLL LSPGLRGTPD CSFPHSPISS TFTSTIGKLS bmy_06381T0/1-191 ---------- ----PLLSGS LSPRPRV-PI ALFP--PVCS Q--------S ENSTTRP00000005164/1-227 MIVLAPAWSP TTS-LLLLLL LSPRLRGAPD CSFPHXXXXX XXXXXXXXXS 51 100 ENSBTAP00000053945/1-292 KYLLQDYPVT VASNLQDDKL CGAFWRLVLA QRWMGRLKTV AGSEMEKLLE BACU018250/1-281 DYLLQDYPVT VASNLQDDEL CGAFWRLVLA QRWMGRLKTV AGSQMGKLLE bmy_06381T0/1-191 DYLLQDYPVT VASNLQDDEL CGAFWRLVLA QRWMGRLKTV AGSQMGKLLE ENSTTRP00000005164/1-227 DYMLQDYPVT VASNLQDDEL CGAFWRLVLA QRWMGRLKTV AGSQMGKLLE 101 150 ENSBTAP00000053945/1-292 DVNTEIHFVT SCAFQPLPSC LRFVQANISH LLQDTHQQLE ALKPWITHRN BACU018250/1-281 AVNTEIHFVT SCAFQPLPSC LRFVQANISH LLQDTSQEVV ALKPWITRRN bmy_06381T0/1-191 AVNTEIHFVT SCAFQPLPSC LRFVQANISH LLQDTSQQLV ALKPWITRRN ENSTTRP00000005164/1-227 AVNTEIHFVT SCAFQPLPSC LRFVQANISH LLQDTSQQLV ALKPWITRRN 151 200 ENSBTAP00000053945/1-292 FSRCLELQCQ PDSPTLLPPR SPGALGATSL PGPQSPLLLL LLLLLLPVAL BACU018250/1-281 FSRCLELQCQ PDSSTLLPPR SPGALGATSL PAPQAP---L LLLLLLPVAL bmy_06381T0/1-191 FSRCLELQCQ PVS------- -PGALGATSL PAPQAPLLLL LLLLLLPVAL ENSTTRP00000005164/1-227 FSRCLELQCQ PDSSTLLPPR SPGALGATSL PAPQAPLLLL LLLLLLPVAL 201 250 ENSBTAP00000053945/1-292 LLLATAWCLC RWRRRR-RTR YPGERRTTKK PPSIADLPHC ANASCFEIQF BACU018250/1-281 LLLAAAWCL- HWRRKRQRMP YPGERRRTLR PRERSHLPED TESELGGSQL bmy_06381T0/1-191 LLLAAAWCL- HWRRKRQRMP YPGER----- ---------- ---------- ENSTTRP00000005164/1-227 LLLAAAWCL- HWRRKRQRMP YPGER----- ---------- ---------- 251 300 ENSBTAP00000053945/1-292 SIEKLFSYPC PFSYPPGWRQ RQHPPSAP-- PSPLCTKPLS PGNCI BACU018250/1-281 ETGPFLGHIA PVTVSPGWRQ RQHQAAAPAS PSPLCTKPLS PGNCI bmy_06381T0/1-191 ---------- ---------- ---------- ---------- ----- ENSTTRP00000005164/1-227 ----VLEH-- ---------- ---------- ---------- -----