KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:14 2014 Check: 00 .. Name: ENSP00000291890/1-304 Len: 1084 Check: 960 Weight: 1.00 Name: ENSBTAP00000053976/1-308 Len: 1084 Check: 6418 Weight: 1.00 Name: ENSTTRP00000006046/1-304 Len: 1084 Check: 312 Weight: 1.00 Name: bmy_16805T0/1-308 Len: 1084 Check: 9636 Weight: 1.00 Name: BACU009061/1-1081 Len: 1084 Check: 6217 Weight: 1.00 // 1 50 ENSP00000291890/1-304 MSSTLPALLC VGL------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 MPSTLAVFLV LGL------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 MPSALAALLF LGL------- ---------- ---------- ---------- bmy_16805T0/1-308 MAPRDTTLFC LGN------- ---------- ---------- ---------- BACU009061/1-1081 MTPSLMALLC LGLRVGLRTH VQAGTLPKPT IWAEPGSVIP WGSSMTIWCQ 51 100 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 GTLGAREFPL DKEGSSGPWD RQPPLEPRDK GKFSIPHMTP PYAGRYHCYY 101 150 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 LSPTGWSERS DPLELVVTGV HNKPTLSALP SPVVTSGGTV TLQCSSWQGL 151 200 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 DGFILTKEGE PKSSGTLDAQ QGPYGQTQAL HPVGPVTPSH RWTFRCHGFY 201 250 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 RDTPQVWSAP SDPLELLVPG LRVGLRTHVQ AGTLPKPTIW AEPGSVIPWG 251 300 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 SSMTIWCQGT LGAREFPLDK EGSSGPWDRQ PPLEPRDKGK FSIPHMTQPD 301 350 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 AGRYHCYYLS PTGWSERSDP LELVVTGVSG KPSLLTPQGP VVASGQSLTL 351 400 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 QCRSDVGYDR FALSQEGGQA LPQRPGRQPQ AGLSQADFPL GPVTSTHGGR 401 450 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 YRCYGGHNLS SEWSAPSDPL DVLVAGWFPD TPSLSVQPGP VVASGENVTL 451 500 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 LCQSGSRTET FLLSKEGAAR PPLRLRSKYR RQHIQAEFSM SPVTSAHSGT 501 550 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 YRCYSSLSSD PYLLSHVSAP LELAVSGAAD AIHPSQNTSD PTRDVAIVEP 551 600 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 EPMEDRMMNG EVNPPSPNPH HNLSPSTYPM LLPSEIMSQY VILTLLLSGP 601 650 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 ---------L SIPTISATPG SVIPWNESVK ILCGGTPESY LYRLEILGNS BACU009061/1-1081 YSRRHTGWIL SSPTISATPG SLIPWNESVK ILCGGTPESY LYRLEILGNS 651 700 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- ---------- bmy_16805T0/1-308 THKVVDEKWG FQKTAEFVIK HMDTNTAGRY QCRYRKQYSW SVSSEALELV BACU009061/1-1081 TYKVVDNKLG FQKTAEFVIK HMDTNTAGRY QCRYMKQYSW SVHSEALELV 701 750 ENSP00000291890/1-304 ---------- ---------- --CLSQRISA QQ-------- ---------- ENSBTAP00000053976/1-308 ---------- ---------- --GLSQRSST QK-------- ---------- ENSTTRP00000006046/1-304 ---------- ---------- --SLSQGTST QK-------- ---------- bmy_16805T0/1-308 VTGL------ ---------- --SLSQRTST QK-------- ---------- BACU009061/1-1081 VTGLYDKPSL STDGCLVVMP GESVSLRCSS AHISFNGFSL SKEGRAVLSQ 751 800 ENSP00000291890/1-304 ---------- ---------- ---------- ---------- --------QT ENSBTAP00000053976/1-308 ---------- ---------- ---------- ---------- --------QM ENSTTRP00000006046/1-304 ---------- ---------- ---------- ---------- --------QT bmy_16805T0/1-308 ---------- ---------- ---------- ---------- --------QT BACU009061/1-1081 HQNGGRWGDF ILGPVNLSFS GIYTCYSWYS GSPHVWSAPS DALELVVTET 801 850 ENSP00000291890/1-304 LPKPFIWAEP HFMVPKEKQV TICCQGNYGA VEYQLHFEGS LFAVDRPKPP ENSBTAP00000053976/1-308 LSKPAIWVRP SFMIPKGRSA TIGCRGAGEA MEYQLHFEGG LSALKRPKSS ENSTTRP00000006046/1-304 LSKPVIWVKP SFMIPEGKLA IIWCQGTHEA AEYQLHFEGG LSAFKRPKSP bmy_16805T0/1-308 LSKPVIWAKP SFMIPKGKLV IIWCQGTHEA VEYQLHFEGG LSAFKRPESP BACU009061/1-1081 LSKPVIWAKP SFMIPKGTLV IIWCQGTHKA VEYQLHFEGG LSAFKRPESP 851 900 ENSP00000291890/1-304 ERINKVKFYI PDMNSRMAGQ YSCIYRVGEL WSEPSNLLDL VVTEMYDTPT ENSBTAP00000053976/1-308 PVMNWVKFPI PAMTSHTAGQ YRCSYRSGEL WSELSDPLEL VVTGLYDTPT ENSTTRP00000006046/1-304 GMSNRVKFPI PSMTSQTAGQ YRCFYRSGEL WSEPSDPLDL VVTGLYDTPT bmy_16805T0/1-308 GMVNRVKFPI PSMTSQTAGQ YRCFYRSGEL WSEPSDPLDL VVT------- BACU009061/1-1081 GMVNRVKFPI PSMTSQTAGQ YRCFYRSGEL WSEPSDPLDL VVTGLYDTPT 901 950 ENSP00000291890/1-304 LSVHPGPEVI SGEKVTFYCR LDTATSMFLL LKEGRSSHVQ RGYGKVQAEF ENSBTAP00000053976/1-308 LSVEPRSEVT SGENVTFHCQ LATATSTFFL LKKGRSSRPQ LRYGNLRAEF ENSTTRP00000006046/1-304 LSVQPRPEVI SGEEVTFRCR LETATSTFFL LKEGRSSRPQ RRYGNIQAEF bmy_16805T0/1-308 ---------- ---------- ---------- ---------- ---------- BACU009061/1-1081 LSVQPRPEVT SGENVTFRCR LETATSIFFL LKEGRSSRPQ RRDGNIQAEF 951 1000 ENSP00000291890/1-304 PLGPVTTAHR GTYRCFGSYN NHAWSFPSEP VKLLVT--GD IENTSLAPED ENSBTAP00000053976/1-308 HLGPVTPAHG GTYRCFGSYN NHAWSFPSKP VKLLVKVPGD AGDTTFAPTE ENSTTRP00000006046/1-304 PMGPVSTAHR GTYRCFGSYN THAWSFPSEP VKLLVK--GD AGDTTFEPTE bmy_16805T0/1-308 ---------- ---------- ---------- --------GD AGDTTFAPTE BACU009061/1-1081 PMGPVSTAHR GTYRCFGSYN KHTWSFPSEP VKLLVE--GD AGDTTFAPTE 1001 1050 ENSP00000291890/1-304 PTFPADTWGT YLLTTETGLQ KDHALWDHTA QNLLRMGLAF LVLVALVWFL ENSBTAP00000053976/1-308 HTSS-DYWDS YELTTGTQSQ KDHLLWNHMI QNLIRLGLAV LVLVALMGFL ENSTTRP00000006046/1-304 HTSSADHWDS YMLTTEAQFQ EDPVLWGHNA QNLLRIGLVF LVLVALVWLP bmy_16805T0/1-308 HTSS-DHWDS YMLTTETQFQ EDPVLRDHNA QNLLRIGLVF LVLVALVWLL BACU009061/1-1081 HTSS-GHWDS YMLTTETQFQ EDPVLWDHNA QNLLRIGLVF LVLVALVSLL 1051 1100 ENSP00000291890/1-304 VEDWLSRKRT RERASRASTW EGRRRLNTQT L--- ENSBTAP00000053976/1-308 LEDWLHRRKS QERAHRASRR GCRRRLRAQR ALET ENSTTRP00000006046/1-304 VENWLHRKKL QERASRASRQ EC-RRFRAQS PG-- bmy_16805T0/1-308 VEDWLHRKKP QERASRASSQ ECRRRFRTQR ALEK BACU009061/1-1081 VEDWLQRKKP QDRASRASSQ ECRRRFRTQR ALEE