KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 18:23:14 2014  Check: 00 ..

 Name: ENSTTRP00000010494/1-133  Len:    182  Check:  3716  Weight:  1.00
 Name: ENSP00000400482/1-182     Len:    182  Check:  4864  Weight:  1.00
 Name: ENSBTAP00000053978/1-137  Len:    182  Check:  7514  Weight:  1.00
 Name: bmy_05302T0/1-96          Len:    182  Check:  3409  Weight:  1.00
 Name: BACU018083/1-133          Len:    182  Check:  713  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000010494/1-133  ---------- ---------- ---------- ---------- ---------G 
ENSP00000400482/1-182     MWPPDPDPDP DPEPAGGSRP GPAVPGLRAL LPARAFLCSL KGRLLLAESG 
ENSBTAP00000053978/1-137  ---------- ---------- ---------- ---------- -----LTSQG 
bmy_05302T0/1-96          ---------- ---------- ---------- ---------- ---------- 
BACU018083/1-133          ---------- ---------- ---------- ---------- ---------G 


                          51                                                 100
ENSTTRP00000010494/1-133  LSFITFVCYV ASSASAFLTA PLLEFLLALC FLFADAMQLN DKWQGLCWPM 
ENSP00000400482/1-182     LSFITFICYV ASSASAFLTA PLLEFLLALY FLFADAMQLN DKWQGLCWPM 
ENSBTAP00000053978/1-137  LSFIIFVCYV ASSASAFLTA PLLEFLLALC FLFADAMQLN DKWQGLCWPM 
bmy_05302T0/1-96          ---------- ---------- ---------- ------MQLN DKWQGLCWPM 
BACU018083/1-133          LSFITFVCYV ASSASAFLTA PLLEFLLALC FLFADAMQLN DKWQGLCWPM 


                          101                                                150
ENSTTRP00000010494/1-133  MDFLRCVTAA LIYFAISITA VAKYSDGASK AAGXXXXXAT IVFAIDFYLI 
ENSP00000400482/1-182     MDFLRCVTAA LIYFAISITA IAKYSDGASK AAGVFGFFAT IVFATDFYLI 
ENSBTAP00000053978/1-137  MDFLRCVTAA LIYFAISITA VAKYPDGASK AAGVFGFFAT IVFAIDFYLI 
bmy_05302T0/1-96          MDFLRCVTAA LIYFAISITA VAKYSDGASK AAGVFGFFAT IVFAIDFYLI 
BACU018083/1-133          MDFLRCVTAA LIYFAISITA VAKYSDGASK AAGVFGFFAT IVFAIDFYLI 


                          151                                                200
ENSTTRP00000010494/1-133  FNDVAKFLKQ GDSAGETAAD KAEXXXXDSD SD 
ENSP00000400482/1-182     FNDVAKFLKQ GDSADETTAH KTEEENSDSD SD 
ENSBTAP00000053978/1-137  FNDVAKFLKQ EDSAQETTAD KAEEEDSDSD SD 
bmy_05302T0/1-96          FNDVAKFLKQ GDSADETTAD KAEEENSDSD SD 
BACU018083/1-133          FNDVAKFLKQ GDSAAETAAD KAEEENSDSD SD