KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:15 2014 Check: 00 .. Name: ENSTTRP00000001682/1-485 Len: 503 Check: 9492 Weight: 1.00 Name: ENSP00000334294/1-500 Len: 503 Check: 3069 Weight: 1.00 Name: bmy_16424T0/1-345 Len: 503 Check: 787 Weight: 1.00 Name: ENSBTAP00000053981/1-201 Len: 503 Check: 7648 Weight: 1.00 // 1 50 ENSTTRP00000001682/1-485 MSGPWPLEPP QAG------- --RGPEGADA LLWEPGLIYP TTHLSLVEMT ENSP00000334294/1-500 MSGPGPREPP PEAGAAGGEA AVEGAGGGDA ALGEPGLSFT TTDLSLVEMT bmy_16424T0/1-345 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053981/1-201 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001682/1-485 IE--YQLQHI LYSHMEAAAA DGELETRLNS AFLAAAAPGA AAGGFAAA-- ENSP00000334294/1-500 EVEYTQLQHI LCSHME-AAA DGELETRLNS ALLAAAGPGA GAGGFAAGGQ bmy_16424T0/1-345 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053981/1-201 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001682/1-485 GGAAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000334294/1-500 GGAAPVYPVL CPSALAADAP CLGHIDFQEL RMMLLSEAGA AEKTSGGGDG bmy_16424T0/1-345 ---------- ---------- ---------- --MLLSEAGA P-PAAEKTPG ENSBTAP00000053981/1-201 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000001682/1-485 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000334294/1-500 ARARADGAAK EGAGAAAAAA GPDGAPEARA KPAVRVRLED RFNSIPAEPP bmy_16424T0/1-345 ADGPGAGAPR PKAPDGAGKE NVEGAPEARA KSAVRVRLED RFNSIPAEPP ENSBTAP00000053981/1-201 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000001682/1-485 XXXXXXXXXX XXXXXXXLVT LIRHPSELMN VPLHQQQNKC TTLVKNKTAA ENSP00000334294/1-500 PAPRGPEPPE PGGALNNLVT LIRHPSELMN VPL-QQQNKC TALVKNKTAA bmy_16424T0/1-345 PALRGADPPE TGMALNNLVT LIRHPSELMN VPLHQQQNKC TTLVKNKTAA ENSBTAP00000053981/1-201 ---------- ----LGSLVT LIRHPSELMN VPLHQQQNKC TTLVKNKTTA 251 300 ENSTTRP00000001682/1-485 AATALQFTYP LFTANSCSAS GNSNLSQTQS SSNSCSVLEA TKHQDIGLPR ENSP00000334294/1-500 TTTALQFTYP LFTTNACSTS GNSNLSQTQS SSNSCSVLEA AKHQDIGLPR bmy_16424T0/1-345 ATTALQFTYP LFTANSCSTS GNSNLSQTQS SSNSCSVLEA TKHQDIGLPR ENSBTAP00000053981/1-201 ATTALQFTYP LFTTNACATS GNSNISQTQS SSNSCSILET AKHQDIGLPR 301 350 ENSTTRP00000001682/1-485 AFSFCYQQEI ESTKQTLGSR NKALPEQVWI KVGEEALCKQ AISKRSRSRI ENSP00000334294/1-500 AFSFCYQQEI ESTKQTLGSR NKVLPEQVWI KVGEAALCKQ AL-KRNRSRM bmy_16424T0/1-345 AFSFCYQQEI ESTKQTLGSR NKALPEQVWI KVGEEALCKQ AINKRSRSRM ENSBTAP00000053981/1-201 AFSFCYQQEI ESTKQTLGSR NKALPEQVWI KVGEEALCKQ AISKRNRSRI 351 400 ENSTTRP00000001682/1-485 RQLDTNLERR ALGELQNVGE GSAAAQGAWQ SVELSQATFG EQTQSGPQRG ENSP00000334294/1-500 RQLDTNVERR ALGEIQNVGE GATATQGAWQ SSESSQANLG EQAQSGPQGG bmy_16424T0/1-345 RQLDTNVERR ALGELQNVGE GSTAAQGAWQ SVASSQAALG EQPQSGPQGG ENSBTAP00000053981/1-201 RQLDTNVERR ALGEIQNVGE GSTAAQGAWQ SAESSQATLG EQTQSGPQGG 401 450 ENSTTRP00000001682/1-485 RSQRRERHNR MERDRRRRIR ICCDELNLLV PFCNAETD-A TTLQWTTAFL ENSP00000334294/1-500 RSQRRERHNR MERDRRRRIR ICCDELNLLV PFCNAETDKA TTLQWTTAFL bmy_16424T0/1-345 RSQRRERHNR MERDRRRRIR ICCDELNLLV PFCNAETDKA TTLQWTTAFL ENSBTAP00000053981/1-201 RSQRRERHNR MERDR----- ---------- ---------- ---------- 451 500 ENSTTRP00000001682/1-485 -YIQDRHGDS F-KEFESVFC GKTGRRLKLT RPDSLVTCPT QG--QSSPAM ENSP00000334294/1-500 KYIQERHGDS LKKEFESVFC GKTGRRLKLT RPDSLVTCPA QGSLQSSPSM bmy_16424T0/1-345 KYIQERHGDS LKKMSQTVLC --------FV EPN--VRC-- ---------- ENSBTAP00000053981/1-201 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000001682/1-485 ETK ENSP00000334294/1-500 EIK bmy_16424T0/1-345 --- ENSBTAP00000053981/1-201 ---