KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:17 2014 Check: 00 .. Name: ENSTTRP00000005043/1-571 Len: 610 Check: 6674 Weight: 1.00 Name: ENSBTAP00000053996/1-609 Len: 610 Check: 8461 Weight: 1.00 Name: bmy_04812T0/1-588 Len: 610 Check: 3275 Weight: 1.00 Name: BACU000910/1-497 Len: 610 Check: 2334 Weight: 1.00 // 1 50 ENSTTRP00000005043/1-571 --PGLAWAVA RASAGTRKPR PRRTSRPAPG GKLTGSALLL RPENG----- ENSBTAP00000053996/1-609 MPVDEYWLCL PAFHVRPFVQ TVRMMQSCPC CCWFPGVLPL VPEPSCIPAA bmy_04812T0/1-588 MPVDEYWLCL PASHVRPFVQ TVRVMQSCPC CCWFPGALPS IPEPWCVLAV BACU000910/1-497 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005043/1-571 ---------- ----RGLEGA LCELTLKTDI PVVFVKRRKL GGHGPTLKXX ENSBTAP00000053996/1-609 LPAGSR-AAP PPPLHTAPSS SSQASFSTDP KLCLLPPTSD GRQEENVQSG bmy_04812T0/1-588 LPGGSHGAAP PPPFHTAPPS TSQASNSTDP KLCLLSPTSD GRQEKNVQSG BACU000910/1-497 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005043/1-571 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---XXXXXXX XXEAAKYDKK ENSBTAP00000053996/1-609 LASQENRLQN PVKMNGSKDL PEPYDYDLII IGGGSGGLAA AKEAAKYDKK bmy_04812T0/1-588 LAYQEGXLQN LLKMNGSKDL PESYDYDLII ---------- --EAAKYNKK BACU000910/1-497 ---------- ---MNGSEDL PESYDYDLIV VGGGSGGLAA AKEAAKYNKK 151 200 ENSTTRP00000005043/1-571 VMVLDFVTPT PLGTRWXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053996/1-609 VMVLDFVTPT PLGTRWGLGG TCVNVGCIPK KLMHQAALLG QALRDSRNYG bmy_04812T0/1-588 VMVLDFVTPT PLGTTWGLGG TCVNVGCIPK KLMHQAALLG QALRDSRNYG BACU000910/1-497 VMVLDFVTPT PLGTTWGLGG TCVNVGCIPK KLMHQAALLG QALRDSRNYG 201 250 ENSTTRP00000005043/1-571 XXXXXXXKHD WERMTEAVQN HIGSLNWGYR VALREKKVTY ENAYGQFVGP ENSBTAP00000053996/1-609 WNVEETVKHD WERMTEAVQN HIGSLNWGYR VALREKKVTY ENAYGEFVGP bmy_04812T0/1-588 WNVEEIVKHD WERMTEAIQN HIGSLNWGYR VALREKKVTY ENAYGQFVGP BACU000910/1-497 WNIEETVKHD WERMTEAIQN HIGSLNWGYR VALREKKVTY ENAYGQFVGP 251 300 ENSTTRP00000005043/1-571 HRIKATNNKG KEKIYSAERF LIATGERPRY LGIPGDKEYC ISXXXXXXXX ENSBTAP00000053996/1-609 HRIKATNNKG KEKIYSAERF LIATGERPRY LGIPGDKEYC ISSDDLFSLP bmy_04812T0/1-588 HRIKATNNKG KEKIYSAERF LIATGERPRY LGIPGDKEYC ISSDDLFSLP BACU000910/1-497 HRIKATNNKG KEKIYSAERF LIATGERPRY LGIPGDKEYC ISSDDLFSLP 301 350 ENSTTRP00000005043/1-571 XXXXXXXXXX XXXXALECAG FLAGIGLDVT VMVRSILLRG FDQDMANKIG ENSBTAP00000053996/1-609 YCPGKTLVVG ASYVALECAG FLAGIGLDVT VMVRSILLRG FDQDMANKIG bmy_04812T0/1-588 YCPGKTLVVG ASYVALECAG FLAGIGLDVT VMVRSILLRG FDQDMANKIG BACU000910/1-497 YCPGKTLVVG ASYVALECAG FLAGIGLDVT VMVRSILLRG FDQDMANKVG 351 400 ENSTTRP00000005043/1-571 EHMEEHGIKF IRQFVPIKVE QIEXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053996/1-609 EHMQEHGIKF IRQFVPIKVE QIEAGTPGRL RVIAKSTDSD QTIEGEYNTV bmy_04812T0/1-588 EHMEEHGIKF IRQFVPIKVE QIEAGTPGRL RVVAKSTDSD ITIEGEYNTV BACU000910/1-497 EHMEEHGIKF IRQFVPIKVE QIEAGTPGRL RVVAKSTDSD VTIEGEYNTV 401 450 ENSTTRP00000005043/1-571 XXXXXXXXXX XXXXXXXXXX XXXXXTGKIP VTDEEQTSVP YIYAIGDVLE ENSBTAP00000053996/1-609 LLAIGRDACT RKIGLENVGV KINEKTGKIP VTEEEQTNVP YIYAIGDILE bmy_04812T0/1-588 LLAIGRDACT REIGLENVGV KLNEQTGKIP VTDEEQTSVP YIYAIGDVLE BACU000910/1-497 LLAIGRDACT REIGLENVGV KLNEQTGKIP VTDEEQTSVP YIYAIGDVLE 451 500 ENSTTRP00000005043/1-571 GKLELTPVAI QAGRLLARRL YGSSTVKCDY ENVPTTVFTP LEYGACGLSE ENSBTAP00000053996/1-609 GKLELTPVAI QAGRLLAQRL YGGSTVKCDY ENVPTTVFTP LEYGSCGLSE bmy_04812T0/1-588 GKLELTPVAI QAGRLLVQRL YGGSAVKCDY DNVPTTIFTP LEYGACGLSE BACU000910/1-497 GKLELTPVAI QAGRLLVQRL YGGSAVKCDY ENVPTTIFTP LEYGACGLSE 501 550 ENSTTRP00000005043/1-571 EKAVEKFGEE NIEVYHSHFW PLEWTIPSRD NNKCYAKIVC NIKDSERVVG ENSBTAP00000053996/1-609 EKAVEKFGEE NVESCHSFEW PLEWTIPSRD NNKCYAKVVC NIKDNERVVG bmy_04812T0/1-588 EKAV------ ----FHSYFW PLEWTXPSRD NNKCYAKIVC NIKDSERVVG BACU000910/1-497 EKAVEKFGEE NIEVFHSYFW PLEWAIPSRD NNKCYAKIVC NIKDSERVVG 551 600 ENSTTRP00000005043/1-571 FHVLGPNAGE VTQGFAVALK CGLTKDQLDG TIGIHPVCAE FFSFN----- ENSBTAP00000053996/1-609 FHVLGPNAGE VTQGFAAALK CGLTKDQLDS TIGIHPVCAE VFTTLSVTKR bmy_04812T0/1-588 FHILGPNAGE VTQGFAAALK CGLTKDQLDG TIGIHPVCAE VFTTLSVTKR BACU000910/1-497 FHILGPNAGE VTQGFAAALK CGLTKDQLDG TIGIHPVCAE VFTTLSVTKR 601 650 ENSTTRP00000005043/1-571 ---------- ENSBTAP00000053996/1-609 SGGNILQTGC bmy_04812T0/1-588 SGGNILQTGC BACU000910/1-497 SGGNILQTGC