KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:18 2014 Check: 00 .. Name: ENSP00000328203/1-469 Len: 504 Check: 6952 Weight: 1.00 Name: ENSBTAP00000054002/1-472 Len: 504 Check: 2959 Weight: 1.00 Name: ENSTTRP00000004620/1-471 Len: 504 Check: 260 Weight: 1.00 Name: bmy_06022T0/1-445 Len: 504 Check: 217 Weight: 1.00 Name: BACU002388/1-471 Len: 504 Check: 873 Weight: 1.00 // 1 50 ENSP00000328203/1-469 MPIRALCTIC SDFFDHSRDV AAIHCGHTFH LQCLIQWFET APSRTCPQCR ENSBTAP00000054002/1-472 MPIRALCTIC SDFFDHSRDV AAIHCGHTFH SHCLIQWFET APSRTCPQCR ENSTTRP00000004620/1-471 MPIRALCTIC SDFFDHSRDV AAIHCGHIFH LQCLIQWFET APSRTCPQCR bmy_06022T0/1-445 MPIRALCTIC SDFFDHSRDV AAIHCGHTFH LQCLIQWFET APSRTCPQCR BACU002388/1-471 MPIRALCTIC SDFFDHSRDV AAIHCGHTFH LQCLIQWFET APSRTCPQCR 51 100 ENSP00000328203/1-469 IQVGKRTIIN KLFFDLAQEE ENVLDAEFLK NELDNVRAQL SQKDKEKRDS ENSBTAP00000054002/1-472 IQVGKRTIIN KLYFDLAPEE ENVLDTEFLK NELDNTRALL SQKEKEKRDS ENSTTRP00000004620/1-471 IQVGKRTIIN KLFFDLAQEE ESVLDAEFLK NELDNTRALL SQKEKEKRDG bmy_06022T0/1-445 IQVGKRTIIN KLFFDLAQEE ESVLDAEFLK NELDNTRALL SQKEKEKRDS BACU002388/1-471 IQVGKRTIIN KLFFDLAQEE ESVLDAEFLK NELDNTRALL SQKEKEKRDS 101 150 ENSP00000328203/1-469 QVIIDTLRDT LEERNATVVS LQQALGKAEM LCSTLKKQMK YLEQQQDETK ENSBTAP00000054002/1-472 QLIIDSLRDT LDERNATVES LQRALDKAEM LCSTLKKQMK YLEQQQDEAK ENSTTRP00000004620/1-471 QLIIDTLRDT LEERNATVES LQKALDKAEM LCSTLKKQMK YLEQQQDETK bmy_06022T0/1-445 QLIIDTLRDT LEERNATVES LQKALDKAEM LCSTLKKQMK YLEQQQDETK BACU002388/1-471 QLIIDTLRDT LEERNATVES LQKALDKAEM LCSTLKKQMQ YLEQQQDETK 151 200 ENSP00000328203/1-469 QAQEEARRLR SKMKTMEQIE LLLQSQRPEV EEMIRDMGVG QSAVEQLAVY ENSBTAP00000054002/1-472 QAREEARRLR SKMKNMERIE LLLRSQRPEV EEMIRDMGVG QSAVEQLAVY ENSTTRP00000004620/1-471 QAREEARRLR NKMKTMERIE LLLQSQRPEV EEMIRDMGVG QSAVEQLAVY bmy_06022T0/1-445 QAREEARRLR NKMKTMERIE LLLQSQRPEV EEMIRDMGVG QSAVEQLAVY BACU002388/1-471 QAREEARRLR NKMKTMERIE LLLQSQRPEV EEMIRDMGVG QSAVEQLAVY 201 250 ENSP00000328203/1-469 CVSLKKEYEN LKEARKASGE VADKLRKDLF SSRSKLQTVY SELDQAKLEL ENSBTAP00000054002/1-472 CVSLKKEYEN LKEARKASGE LADKLKKDLL SSRSKLQTVC SELDQAKLEL ENSTTRP00000004620/1-471 CVSLKKEYEN LKEARKASGE LADKLKKDLF SSRSKLQTVY SELDQAKLEL bmy_06022T0/1-445 CVSLKKEYEN LKEARKASGE LADKLKKDLF SSRNKLQTVY SELDQAKLEL BACU002388/1-471 CVSLKKEYEN LKEARKASGE LADKLKKDLF SSRNKLQTVY SELDQAKLEL 251 300 ENSP00000328203/1-469 KSAQKDLQSA DKEIMSLKKK LTMLQETLNL PPVASETVDR LVLESPAPVE ENSBTAP00000054002/1-472 KSSQKDLQSA DKEIASLKKK LTILQETLKL PPGDSETINR LVLESPAPME ENSTTRP00000004620/1-471 RSAQKDLQSA DKEIASLRKK LTMLQETLNL PPVDSEAVNR LVLESPAPVE bmy_06022T0/1-445 KSAQKDLQSA DKEIASLRKK LTMLQETLNL PPVDSETVNR LVLESPAPVE BACU002388/1-471 RSAQKDLQSA DKEIASLRKK LTMLQETLNL PPVDSETVNR LVLESPAPVE 301 350 ENSP00000328203/1-469 -VNLKLRRPS FRDDIDLNAT FDVDTPPARP SSSQHGYYEK LCLEKSHSPI ENSBTAP00000054002/1-472 MVSLKLRRPA FGDDIDLNAT FNVDTPPTQP SSTQYGLAKR LFPKKAHSPV ENSTTRP00000004620/1-471 MLNLKLRRPA FGDDIDLNAT FNVDTPPAQP SSTQHGHAKR LFPEKAHSPV bmy_06022T0/1-445 MLNLKLRQPA FGDDIDLNVT FNVDTPPAQP SSTQHGHAKR LFPEKA---- BACU002388/1-471 MLNLKLRQPA FGDDIDLNVT FNVDTPPAQP SSAQHGHAKR LFPEKAHSPV 351 400 ENSP00000328203/1-469 QDVPKKICKG PRKESQLSLG GQSCAGEPDE ELVGAFPIFV RNAILGQKQP ENSBTAP00000054002/1-472 QDIPKKMPKG PRQESQLSLG GQRCLGEPDE ELASAFPVFI RNAVLGQKQT ENSTTRP00000004620/1-471 QDVLKKMPKG PKQESQLLLG GQRCLGEPDE ELAGAFPVFI RNAVLGQKQT bmy_06022T0/1-445 ---------- -----QLIKP G--------- ---------- ---------- BACU002388/1-471 RDILKKMPKG PKQKSQLLLG GQRCLGEPDE ELADAFPVFI RNAVLGQKQT 401 450 ENSP00000328203/1-469 KRPRSESSCS KDVVRTGFDG LGGRTKFIQP TDTVMIRPLP V--KPKTKVK ENSBTAP00000054002/1-472 KRVRAEPCRS TDAVRIGFDG LGGRTKFIQP TDTTMIRPLP VKPKPKARAR ENSTTRP00000004620/1-471 KRTRAEPCRS TDAVRTGFDG LGGRTKFIQP TDTTMIRSLP VKPKPKARAK bmy_06022T0/1-445 ---------- -SGVRTGFDG LGGRTKFIQP TDTTMIRPLP VKPKPKARAK BACU002388/1-471 KRTRVEPCRS TDAVRTGFDG LGGRTKFIQP TDTSMIRPLP VKPKPKARAK 451 500 ENSP00000328203/1-469 QRVRVKTVPS LFQAKLDTFL WS-------- ---------- ---------- ENSBTAP00000054002/1-472 QKLGARTAPT PSQATLDNFL WQ-------- ---------- ---------- ENSTTRP00000004620/1-471 QRLGARTVLP PSQAKLDTFL W--------- ---------- ---------- bmy_06022T0/1-445 QRLGARTVLP PSQAKLDTFL WPRTADWLGR WFGGHGPSSR TSPEDEDKQE BACU002388/1-471 QRLGARTVLP PSQAKLDTFL W--------- ---------- ---------- 501 550 ENSP00000328203/1-469 ---- ENSBTAP00000054002/1-472 ---- ENSTTRP00000004620/1-471 ---- bmy_06022T0/1-445 DGGE BACU002388/1-471 ----