KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:19 2014 Check: 00 .. Name: ENSP00000387100/1-711 Len: 751 Check: 5649 Weight: 1.00 Name: ENSBTAP00000054003/1-398 Len: 751 Check: 1947 Weight: 1.00 Name: ENSTTRP00000014552/1-419 Len: 751 Check: 4689 Weight: 1.00 Name: bmy_13874T0/1-454 Len: 751 Check: 9866 Weight: 1.00 Name: BACU009826/1-484 Len: 751 Check: 9019 Weight: 1.00 // 1 50 ENSP00000387100/1-711 MAALGRPGSG PRAAVPAWKR EILERKRAKL AALGGGAGPG AAEPEQRVLA ENSBTAP00000054003/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014552/1-419 ---------- ---------- ---------- ---------- ---------- bmy_13874T0/1-454 ---------- ---------- ---------- ---------- ---------- BACU009826/1-484 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000387100/1-711 ESLGPLRENP FMLLEAERRR GGGAAGARLL ERYRRVPGVR ALRADSVLII ENSBTAP00000054003/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014552/1-419 ---------- ---------- ---------- ---------- ---------- bmy_13874T0/1-454 ---------- ---------- ---------- ---------- ---------- BACU009826/1-484 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000387100/1-711 ETVPGFPPAP PAPGAAQIRA AEVLVYGAPP GRVSRLLERF DPPAAPRRRG ENSBTAP00000054003/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014552/1-419 ---------- ---------- ---------- ---------- ---------- bmy_13874T0/1-454 ---------- ---------- ---------- ---------- ---------- BACU009826/1-484 ---------- ---------- ---------- ---------- MGAAPLRPAG 151 200 ENSP00000387100/1-711 SPERARPPPP PPPPAPPRPP PAAPSPPAAP GPRGGGASPG ARRSDFLQKT ENSBTAP00000054003/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014552/1-419 ---------- ---------- ---------- ---------- ---------- bmy_13874T0/1-454 ---------- ---------- --TPS----- ---------- ---------- BACU009826/1-484 RRGRGERSPI STAGHPPSHS PGTPS----- ---------- ---------- 201 250 ENSP00000387100/1-711 GSNSFTVHPR GLHRGAGARL LSNGHSAPEP RAGPANRLAG SPPGSGQWKP ENSBTAP00000054003/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014552/1-419 ---------- ---------- ---------- ---------- ---------- bmy_13874T0/1-454 ---------- ---------- ---------- ---------- ---------- BACU009826/1-484 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000387100/1-711 KVESGDPSLH PPPSPGTPSA TPASPPASAT PSQRQCVSAA TSTNDSFEIR ENSBTAP00000054003/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014552/1-419 ---------- ---------- ---------- ---------- ---------- bmy_13874T0/1-454 ---------- --ATPVAPPA LPTLSPASAT PSQRQWVSAA TSANDSFEIL BACU009826/1-484 ---------- --ATPAAPPA LPTLSPASAT PSQRQWVSAA TSANDSFEIL 301 350 ENSP00000387100/1-711 PAPKPVMETI PLGDLQARAL ASLRANSRNS FMVIPKSKAS GAPPPEGRQS ENSBTAP00000054003/1-398 ------MGRI PAGDLQARAL ASLRVNSRNS FVVIPKRKTS GAPPGEGRRS ENSTTRP00000014552/1-419 ------MDTI PAGDLQARAL ASLRMNSRNS FVFIPKRKTS GAPPAEGRQS bmy_13874T0/1-454 PASKPDMDTI PAGDLQARAL ASLRMNSRNS FVFIPKRKTS GAPPAEGSQS BACU009826/1-484 PASKPDMDTI PAGDLQARAL ASLRMNSRNS FVFIPKRKTS RAPPAEGRQS 351 400 ENSP00000387100/1-711 VELPKGDLGP ASPSQELGSQ PVPGGDGAPA LGKSPLEVEA QWAVEEGACP ENSBTAP00000054003/1-398 VAPPEEE-GW ASQHPEPEAQ LVPGVNGVFA GERSPS---- --RIEEGGSP ENSTTRP00000014552/1-419 VGPPEGEVGW ASQHQEREAQ QVPGADGVFA GGRSPS---- --GVEEGGCP bmy_13874T0/1-454 VGPPEGEVGW ASQHQEREAQ QVPGADGVFA GGRSPS---- --GVEEGGCP BACU009826/1-484 VGPPEGEVGW ASQHQEREAQ QVPGADGVFA GGRSPS---- --GVEEGGCP 401 450 ENSP00000387100/1-711 RTATALADRA IRWQRPSSPP PFLPAASEEA EPAEGLRVPG LAKNSREYVR ENSBTAP00000054003/1-398 APTTALVDPA VRWQRPPSPP PS-PRAAAEA EPAQGFQTPG LAKNGREPGR ENSTTRP00000014552/1-419 VPGTTLVDWT VRWQRLSSPP PS-PLVATEA EPAQGFGVPG LTKNGREPGR bmy_13874T0/1-454 MPATALVDWT VRWQRLSSPP PS-PLVATEA EPAQGFGVPG LTKNGREPGR BACU009826/1-484 MPATALVDWT VRWQRLSSPP PS-PLVATEA EPAQGFGVPG LTKNGREPGR 451 500 ENSP00000387100/1-711 PGLPVTFIDE VDSE-EAPQA AKLPY---LP HPARPLHPAR PGCVAELQPR ENSBTAP00000054003/1-398 PGLPITFIDE VDSEDEVPQE AKLPCSRVGA PPQYHPHPTR PGHLSELQRR ENSTTRP00000014552/1-419 PGLPVTFIDE VDSEDEVPQE AKLPCPVCLP S---HPHPTG PGHLSELQHR bmy_13874T0/1-454 PGLPVTFIDE VDSEDEVPQE AKLPCPGAAA PPQYHPHPTG PGHLSELQHR BACU009826/1-484 PGLPVTFIDE VDSEDEVPQE AKLPCPRAAA PPQYHPHPTG PGHLSELQHR 501 550 ENSP00000387100/1-711 GSNTFTVVPK RKPGTLQDQH FSQANREPRP REAEEEEASC L------LGP ENSBTAP00000054003/1-398 GGNTFTVVPK RKPGAV---- --QANGEARP REAEEEEPGR VSEPSAAAGT ENSTTRP00000014552/1-419 GGNTFTVVPK RKPGAL---- --QANGEARP REAEEEGPGS L------LGT bmy_13874T0/1-454 GGNTFTVVPK RKPGAL---- --QANGEARP REAEEEGPGS LSEPPAALGP BACU009826/1-484 GGNTFTVVPK RKPGAL---- --QANGEARP REAEEEGPGS LSEPPAALGT 551 600 ENSP00000387100/1-711 TLKKRYPTVH EIEVIGGYLA LQKSCLTKAG SSRKKMKISF NDKSLQTTFE ENSBTAP00000054003/1-398 SLKKRYPTVH EIEVIGGYLA LQKSCLTKAG SSRKKMKISF NDKSLQTTFE ENSTTRP00000014552/1-419 SVKKRYPTVH EIEVIGGYLA LQKSCLIKAG SSRKKMKISF NDKSLQTTFE bmy_13874T0/1-454 SVKKRYPAVH EIEVIGGYLA LQKSCLTKAG SSRKKMKISF NDKSLQTTFE BACU009826/1-484 SVKKRYPTVH EIEVIGGYLA LQKSCLTKAG SSRKKMKISF NDKSLQTTFE 601 650 ENSP00000387100/1-711 YPSESSLEQE EEVDQQEEEE EEEEEEEEEE EG--SGSE-- -EKPFALFLP ENSBTAP00000054003/1-398 YPPESSLQEA EAEEEEEGDA EEDAEA---- ----YGPDGA AEKPLALFLP ENSTTRP00000014552/1-419 YPPESSLQEE EAEAEKGRDE EEESEEGEGE GEP-SGSE-- -EKPFALFLP bmy_13874T0/1-454 YPPESSLQEE EAEAEKGREE EEKEEEEEEE EEEGSGSDTA AEKPFVLFLP BACU009826/1-484 YPPESSLQEE EAEAEKGREE EEENEEGEEE EE--SGSDTA AEKPFVLFLP 651 700 ENSP00000387100/1-711 RATFVSSVRP ESSRLPEGSS GLSSYTPKHS VAFSKWQEQA LEQAPREAEP ENSBTAP00000054003/1-398 RATFVSSVGP ESPRLPDGSS GLSSYTPKHS VAFSKWPEQV LERTPSAEEA ENSTTRP00000014552/1-419 RATFVNSVGP ESPRLPDGSS GLSSYTPKHS VAFSKWQERA LERVPSTEEP bmy_13874T0/1-454 RATFVNSVGP ESPRLPDGSS GLSSYTPKHS VAFSKWQERA LEHAPSTEEP BACU009826/1-484 RATFVNSVGP ESPRLPDGSS GLSSYTPKHS VAFSKWQERV LERAPSTEEP 701 750 ENSP00000387100/1-711 PPVEAM---- ---------- ---------- -LTPASQNDL SDFRSEPALY ENSBTAP00000054003/1-398 PSKEVM---- ---------- ---------- -LTPAGQNDL SDFRSEPALY ENSTTRP00000014552/1-419 PSKEVMVSSR EAGWRGCDAW TSPIDRLSLS QLTPAGQNDL ADFRSEPALY bmy_13874T0/1-454 PSKEVM---- ---------- ---------- -LTPAGQNDL ADFRSEPALY BACU009826/1-484 PSKEVM---- ---------- ---------- -LTPAGQNDL ADFRSEPALY 751 800 ENSP00000387100/1-711 F ENSBTAP00000054003/1-398 F ENSTTRP00000014552/1-419 F bmy_13874T0/1-454 F BACU009826/1-484 F