KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 18:23:19 2014  Check: 00 ..

 Name: ENSP00000330070/1-165     Len:    191  Check:  4121  Weight:  1.00
 Name: ENSBTAP00000054014/1-149  Len:    191  Check:  1984  Weight:  1.00
 Name: bmy_02704T0/1-124         Len:    191  Check:  9550  Weight:  1.00
 Name: BACU020343/1-164          Len:    191  Check:  496  Weight:  1.00
 Name: ENSTTRP00000014760/1-146  Len:    191  Check:  9221  Weight:  1.00

//


                          1                                                   50
ENSP00000330070/1-165     LAWRPGERGA PASRPRLALL LLLLLLPLPS GAWYKHVASP RYHTVGRAAG 
ENSBTAP00000054014/1-149  TRVRGPGRGA TASR-RLLAL LWLLLLPPSA GAWYKHVASP RYHTVGRAAG 
bmy_02704T0/1-124         ---------- ---------- ---------- ---------- ---------- 
BACU020343/1-164          ---------- ---------L LLLLLLPLPA AAWYKHVASP RYHTVGRAAG 
ENSTTRP00000014760/1-146  ---------- ---------L LLLLLLPLPA -AWYKHVSSP RYHTVGRAAG 


                          51                                                 100
ENSP00000330070/1-165     LLMGLRRSPY LWRRALRAAA GPLA------ ---------R DTLSPEPAAR 
ENSBTAP00000054014/1-149  LLMGLRRSPY MWRR----AA GPLTWDTLGL GALPQGPSAR STLSPGPAAL 
bmy_02704T0/1-124         --MGLRRSPY MWRRAPRPAA GPLAWDGFGL GVSPQGPSAR STVSEGPAAR 
BACU020343/1-164          LLMGLRRSPY VWRRALRPAA GSLAWDGFGL GVSPQGPSAR STVSGGPAAR 
ENSTTRP00000014760/1-146  LLMGLRRSPY VWRRALRPAA GPLAWDGFGL G--------- --VSPGPAAR 


                          101                                                150
ENSP00000330070/1-165     EAPLLLPSWV QELWETRRRS SQAGIPVRAP RSPRAPEPAL EPE----SLD 
ENSBTAP00000054014/1-149  DA-LLLPSGA QRPWEARRRS SGAGLRVSAP RNLPAPESAR QPEWRPGAYS 
bmy_02704T0/1-124         DA-VLLPSGV QKLWEVRRRS SRAGLPVSAP RSPRAPKSAP QPELRLGSYS 
BACU020343/1-164          DA-VLLPSGV QKLWEVRRRS SRAGLPVSAP RSPRAPKSAP QPELRLGSYS 
ENSTTRP00000014760/1-146  DA-LLLPSGV QKLWEVRRRS SRAGLPVSAP RSPRAPKSAP QPEL----LD 


                          151                                                200
ENSP00000330070/1-165     FSGAGQ---- ---RLRRDVS RPAVDPAANR LGLPCLAPGP F 
ENSBTAP00000054014/1-149  WILAE----- ---------- ---------- ---------- - 
bmy_02704T0/1-124         WTSEEQ---- ---------A RYAGRGRGRG QQRTRVSREI - 
BACU020343/1-164          LTSEEQASPL CSFQSLRSVS CSVMVCAGNR RRQP------ - 
ENSTTRP00000014760/1-146  LRAGQS---- -----LRSVS CSVMVCAGNR LRQPRLSPEP S