KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:20 2014 Check: 00 .. Name: BACU007454/1-1175 Len: 1175 Check: 7208 Weight: 1.00 Name: ENSP00000354958/1-668 Len: 1175 Check: 6329 Weight: 1.00 Name: ENSBTAP00000054027/1-669 Len: 1175 Check: 8972 Weight: 1.00 Name: bmy_03385T0/1-668 Len: 1175 Check: 5310 Weight: 1.00 Name: ENSTTRP00000008967/1-669 Len: 1175 Check: 8145 Weight: 1.00 // 1 50 BACU007454/1-1175 MMPSPSDSSR SLTSRPSTRG LTHLRLHRPW LQALLTLGLA QVLLGILVVT ENSP00000354958/1-668 MMPSPSDSSR SLTSRPSTRG LTHLRLHRPW LQALLTLGLV QVLLGILVVT ENSBTAP00000054027/1-669 MMPSPSDSSR SLTSRPSTRG LTHLRLHRPW LQALLTLGLA QVLLGVLVVT bmy_03385T0/1-668 MMPSSSDSSR SLTSRPSTRG LTHLRLHRPW LQALLTLGLA QVLLGILVVT ENSTTRP00000008967/1-669 MMPSPSDSSR SLTSRPSTRG LTHLRLHRPW LQALLTLGLA QVLLGILVVT 51 100 BACU007454/1-1175 FSMVASSVTT TESVKRSCPS WAGFSLAFSG VVGIVSWKRP FTLVISFFSL ENSP00000354958/1-668 FSMVASSVTT TESIKRSCPS WAGFSLAFSG VVGIVSWKRP FTLVISFFSL ENSBTAP00000054027/1-669 FSMVASSITT TESVKRSCPS WAGFSLAFSG VVGIVSWKRP FTLVISFFSL bmy_03385T0/1-668 FSMVASSVTT TESVKRSCPS WAGFSLAFSG VVGIVSWKRP FTLVISFFSL ENSTTRP00000008967/1-669 FSMVASSVTT TESVKRSCPS WAGFSLAFSG VVGIVSWKRP FTLVISFFSL 101 150 BACU007454/1-1175 LSVLCVMLSM AGSVLSCKNA QLARDFQECI LNLLFSVCGL TVCAAIICTL ENSP00000354958/1-668 LSVLCVMLSM AGSVLSCKNA QLARDFQQCS L--------- ---------- ENSBTAP00000054027/1-669 LSVLCVMLSM AGSVLSCKNA QLARDFQECN L--------- ---------- bmy_03385T0/1-668 LSVLCVMLSM AGSVLSCKNA QLARDFQECI L--------- ---------- ENSTTRP00000008967/1-669 LSVLCVMLSM AGSVLSCKNA QLARDFQECI L--------- ---------- 151 200 BACU007454/1-1175 SAIVCCIQIF SLDLVHTDGK VCVCCPPVPL LRPCPESGQE LKVAPNSTCD ENSP00000354958/1-668 ---------- -------EGK VCVCCPSVPL LRPCPESGQE LKVAPNSTCD ENSBTAP00000054027/1-669 ---------- -------DGK VCVCCPSVRL LRPCPESGQE LKIALNSTCD bmy_03385T0/1-668 ---------- -------DGK VCVCCPPVPL LRPCPESGQE LKVAPNSTCD ENSTTRP00000008967/1-669 ---------- -------DGK VCVCCPPVPL LRPCPESGQE LKVAPNSTCD 201 250 BACU007454/1-1175 EARGALKNLL FSVCGLTVCA AIICTLSAIV CCIQIFSLDL VHTQLAPERS ENSP00000354958/1-668 EARGALKNLL FSVCGLTICA AIICTLSAIV CCIQIFSLDL VHT-LAPERS ENSBTAP00000054027/1-669 EARGALKNLL FSVCGLTICA AIICTLSAIV CCIQIFSLDL VHTQLAPERS bmy_03385T0/1-668 EARGALKNLL FSVCGLTVCA AIICTLSAIV CCIQIFSLDL VHT-LAPERS ENSTTRP00000008967/1-669 EARGALKNLL FSVCGLTVCA AIICTLSAIV CCIQIFSLDL VHTQLAPEHS 251 300 BACU007454/1-1175 VSGPLGPLGC TSSPPAPLLH TMLDLEEFVP PVPPPPYYPP EYTCSSETDA ENSP00000354958/1-668 VSGPLGPLGC TSPPPAPLLH TMLDLEEFVP PVPPPPYYPP EYTCSSETDA ENSBTAP00000054027/1-669 VSGPLGPLGC TSSPPDPLLH TMLDLEEFVP PVPPPPYYPP EYTCSSETDA bmy_03385T0/1-668 VSGPLGPLGC TSSPPAPLLH TMLDLEEFVP PVPPPPYYPP EYTCSSETDA ENSTTRP00000008967/1-669 VSGPLGPLGC TSSPPAPLLH TMLDLEEFVP PVPPPPYYPP EYTCSSETDA 301 350 BACU007454/1-1175 QSITYNGSMD SPVPLYPTDC PPSYEAVMGL RGDSQATLFD PQLHDGSCIC ENSP00000354958/1-668 QSITYNGSMD SPVPLYPTDC PPSYEAVMGL RGDSQATLFD PQLHDGSCIC ENSBTAP00000054027/1-669 QSITYNGSMD SPVPLYPTDC PPSYEAVMGL RGDSQATLFD PQLHDGSCIC bmy_03385T0/1-668 QSITYNGSMD SPVPLYPTDC PPSYEAVMGL RGDSQATLFD PQLHDGSCIC ENSTTRP00000008967/1-669 QSITYNGSMD SPVPLYPTDC PPSYEAVMGL RGDSQATLFD PQLHDGSCIC 351 400 BACU007454/1-1175 ERVASIVDVS MDSGSLVLSA IGDLPGGSSP SEDSCLLELQ GSVRSVDYVL ENSP00000354958/1-668 ERVASIVDVS MDSGSLVLSA IGDLPGGSSP SEDSCLLELQ GSVRSVDYVL ENSBTAP00000054027/1-669 ERVASIVDVS MDSGSLVLSA IGDLPGGSSP SEDSCLLELQ GSVRSVDYVL bmy_03385T0/1-668 EQVASIVDVS MDSGSLVLSA IGDLPGGSSP SEDSCLLELQ GSVRSVDYVL ENSTTRP00000008967/1-669 ERVASIVDVS MDSGSLVLSA IGDLPGGSSP SEDSCLLELQ GSVRSVDYVL 401 450 BACU007454/1-1175 FRSIQRSRAG YCLSLDCGLR GPFEDSPLPQ RPPRAARSYS CSAPEAPPPL ENSP00000354958/1-668 FRSIQRSRAG YCLSLDCGLR GPFEESPLPR RPPRAARSYS CSAPEAPPPL ENSBTAP00000054027/1-669 FRSIQRSRAG YCLSLDCGLR GPFEDSPLPR RPPRAARSYS CSAPEAPPSL bmy_03385T0/1-668 FRSIQRSRAG YCLSLDCGLR GPFEDSPLPR RPPRAARSYS CSVPEAPPPL ENSTTRP00000008967/1-669 FRSIQRSRAG YCLSLDCGLR GPFEDSPLPR RPPRAARSYS CSAPEAPPPL 451 500 BACU007454/1-1175 GAPTAARSCH RLEGWPPWVG PCFPELRRRV PRGGSRPAAA PPPRAPVRRF ENSP00000354958/1-668 GAPTAARSCH RLEGWPPWVG PCFPELRRRV PRGGGRPAAA PPTRAPTRRF ENSBTAP00000054027/1-669 GAPTAARSCH RLEGWPPWVG PCFPELRRRV PRGGSRPAAA PSPRAPARRF bmy_03385T0/1-668 GAPTAARSCH RLEGWPPWVG PCFPELRRRV PRGGSRPAAA PPPRAPARRF ENSTTRP00000008967/1-669 GAPTAARSCH RLEGWPPWVG PCFPELRRRV PRGGSRPAAA PPPRAPARRF 501 550 BACU007454/1-1175 SDSSGSLTPP GHRPPQPAPR PPLLLPRSHS DPGITTSSDT AEFRDLYTKV ENSP00000354958/1-668 SDSSGSLTPP GHRPPHPASP PPLLLPRSHS DPGITTSSDT ADFRDLYTKV ENSBTAP00000054027/1-669 SDSSGSLTPP GHRPPHPAPP PPLLLPRSHS DPGITTSSNT AEFRDLYTKV bmy_03385T0/1-668 SDSSGSLTPP GHRPPQPAPR PPLLLPRSHS DPGITTSSDT AEFRDLYTKV ENSTTRP00000008967/1-669 SDSSGSLTPP GHRRPQPAPR PPLLLPRSHS DPGITTSSDT AEFRDLYTKV 551 600 BACU007454/1-1175 LEEEAASISS ADTGLCSEAC LFRLARCPSP KLLRARSAEK RHPMPTFQKV ENSP00000354958/1-668 LEEEAASVSS ADTGLCSEAC LFRLARCPSP KLLRARSAEK RRPVPTFQKV ENSBTAP00000054027/1-669 LEEEAASVSS ADTGLCSEAC LFRLAHCPSP KLLRARSAEK RRPVPTFQKV bmy_03385T0/1-668 LEEEAASISS ADTGLCSEAC LFRLARCPSP KLLRARSAEK RHPVPTFQKV ENSTTRP00000008967/1-669 LEEEAASISS ADTGLCSEAC LFRLARCPSP KLLRARSAEK RHPVPTFQKV 601 650 BACU007454/1-1175 PLPSGPAPAH SLGDLKGSWP GRGLVTRFLQ MSRKAPDPNG NGAHGHKQEC ENSP00000354958/1-668 PLPSGPAPAH SLGDLKGSWP GRGLVTRFLQ ISRKAPDPSG TGAHGHKQ-V ENSBTAP00000054027/1-669 PLPSGPAPAH SLGDLKGSWP GRGLVTRFLQ MSRKAPDPNG NGAHGHKQ-V bmy_03385T0/1-668 PLPSGPAPAH SLGDLKGSWP GRGLVTRFLQ MSRKAPDPNG NGAHGHKQ-V ENSTTRP00000008967/1-669 PLPSGPAPAH SLGDLKGSWP GRGLVTRFLQ MSRKAPDPNG NGAHGHKQ-V 651 700 BACU007454/1-1175 PKPRDRVGIL APSLMGLLLL QAVSWASGAR PCSPKSFGYS SVVCVCNATY ENSP00000354958/1-668 PR-------- ---------- ---------- ---------- ---------- ENSBTAP00000054027/1-669 PR-------- ---------- ---------- ---------- ---------- bmy_03385T0/1-668 PR-------- ---------- ---------- ---------- ---------- ENSTTRP00000008967/1-669 PR-------- ---------- ---------- ---------- ---------- 701 750 BACU007454/1-1175 CDSLDPLTLP DPGTFSRFES TRSGRRMELS LGTIQANRTG TGLLLTLQPD ENSP00000354958/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054027/1-669 ---------- ---------- ---------- ---------- ---------- bmy_03385T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008967/1-669 ---------- ---------- ---------- ---------- ---------- 751 800 BACU007454/1-1175 QKFQKVKGFG GAMTDAAALN ILALSPPARD LLLKSYFSKE GIEYNIMRVP ENSP00000354958/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054027/1-669 ---------- ---------- ---------- ---------- ---------- bmy_03385T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008967/1-669 ---------- ---------- ---------- ---------- ---------- 801 850 BACU007454/1-1175 MASCDFSIRT YTYADTPDDF QLLNFSLPEE DVKLKIPLIH QALELAQRPV ENSP00000354958/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054027/1-669 ---------- ---------- ---------- ---------- ---------- bmy_03385T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008967/1-669 ---------- ---------- ---------- ---------- ---------- 851 900 BACU007454/1-1175 SLFASPWTSP TWLKTNGAVN GKGTLKGHPG DLYHQTWARY FVKFLDAYAE ENSP00000354958/1-668 ----SLW--- ---------- ------GRPG ---------- ---------- ENSBTAP00000054027/1-669 ----SPW--- ---------- ------GRPG ---------- ---------- bmy_03385T0/1-668 ----SPW--- ---------- ------GRPG ---------- ---------- ENSTTRP00000008967/1-669 ----SPW--- ---------- ------GRPG ---------- ---------- 901 950 BACU007454/1-1175 HKLQFWAVTA ENEPSAGLFS GYPFQCLGFT PEHQRDFIAR DLGPTLANST ENSP00000354958/1-668 ---------- ---------- ---------- ---RESLHLR SCGDLSSSSS ENSBTAP00000054027/1-669 ---------- ---------- ---------- ---QESLHLR SCGDLSSGSS bmy_03385T0/1-668 ---------- ---------- ---------- ---RESLHLR SCGDLSSGSS ENSTTRP00000008967/1-669 ---------- ---------- ---------- ---RESLHLR SCGDLSSGSS 951 1000 BACU007454/1-1175 HRNVRLLMLD DQRLLLPHWA QVVLADPEAA KYVHGIAVHW YLDFLAPAKA ENSP00000354958/1-668 LRR----LLS GRRL------ ---------- ---------- ---------- ENSBTAP00000054027/1-669 LRR----LLS GRRL------ ---------- ---------- ---------- bmy_03385T0/1-668 LRR----LLS GRRL------ ---------- ---------- ---------- ENSTTRP00000008967/1-669 LRR----LLS GRRL------ ---------- ---------- ---------- 1001 1050 BACU007454/1-1175 TLGETHRLFP DTMLFASEAC VGSKFWEQSV RLGSWDRGVQ YSHSIITNLL ENSP00000354958/1-668 ---------- ---------- ---------- -----ERGTR ---------- ENSBTAP00000054027/1-669 ---------- ---------- ---------- -----ERATR ---------- bmy_03385T0/1-668 ---------- ---------- ---------- -----ERGTR ---------- ENSTTRP00000008967/1-669 ---------- ---------- ---------- -----ERGTR ---------- 1051 1100 BACU007454/1-1175 YHVVGWTDWN LALNPEGGPN WVRNFVDSPI IVDIAKDTFY KQPMFYHLGH ENSP00000354958/1-668 -------PHS LSLN------ ---------- ---------- ---------- ENSBTAP00000054027/1-669 -------PHS LSLN------ ---------- ---------- ---------- bmy_03385T0/1-668 -------PHS LSLN------ ---------- ---------- ---------- ENSTTRP00000008967/1-669 -------PHS LSLN------ ---------- ---------- ---------- 1101 1150 BACU007454/1-1175 FSKFIPEGSQ RVGLVASEKN DLDTVALIHP DGSAVVVVLN RSSKDVPLTI ENSP00000354958/1-668 ------GGSR ETGL------ ---------- ---------- ---------- ENSBTAP00000054027/1-669 ------GGSR ETGL------ ---------- ---------- ---------- bmy_03385T0/1-668 ------GGSQ ETGL------ ---------- ---------- ---------- ENSTTRP00000008967/1-669 ------GGSQ ETGL------ ---------- ---------- ---------- 1151 1200 BACU007454/1-1175 KDPAVGFVET ISPGYSIHTY LWRRQ ENSP00000354958/1-668 ---------- ---------- ----- ENSBTAP00000054027/1-669 ---------- ---------- ----- bmy_03385T0/1-668 ---------- ---------- ----- ENSTTRP00000008967/1-669 ---------- ---------- -----