KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:23 2014 Check: 00 .. Name: BACU000566/1-1308 Len: 1411 Check: 1459 Weight: 1.00 Name: ENSP00000253193/1-770 Len: 1411 Check: 125 Weight: 1.00 Name: ENSBTAP00000054071/1-770 Len: 1411 Check: 9932 Weight: 1.00 Name: bmy_14598T0/1-776 Len: 1411 Check: 6161 Weight: 1.00 Name: ENSTTRP00000011594/1-750 Len: 1411 Check: 3007 Weight: 1.00 // 1 50 BACU000566/1-1308 MASQPPGVPS SAKALDQDGK TALQRSNVQL SSLHIRDGAH RPCKLPWVAL ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ---------- bmy_14598T0/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 51 100 BACU000566/1-1308 VRACGRFKLS LLEARRGRLL PSLNPLAVGN DLPPPEKHWM PEKAAFWGDQ ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ---------- bmy_14598T0/1-776 ---------- ----MKSRVV AFL------- ---------- ---------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 101 150 BACU000566/1-1308 EPLSKIPFKI MRGHQHIVSS CHFCVDDTKV LSGSYDCTVK LWDAVDGSIV ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ----MEKRAA ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ----MEKRAA bmy_14598T0/1-776 ---------- ---------- ---------- ---------- ----LAMTTL ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 151 200 BACU000566/1-1308 RNFEPGPGAP VLECSVTADS RRIIAASYDK TVRVWDLETG KLLWKLSHET ENSP00000253193/1-770 AGLEGAPGAR A--------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 AGPEGAPGAR A--------- ---------- ---------- ---------- bmy_14598T0/1-776 AGLDPTPEKA C--------- ---------- ---------- ---------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 201 250 BACU000566/1-1308 FIVSCKFSPD GKYVVSGLDV DRGICITDAE DTTTVSHIKD HHGMSVTACC ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ----QLAVVC ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ----QLAVVC bmy_14598T0/1-776 ---------- ---------- ---------- ---------- AQAMGGSSVP ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ------AVVC 251 300 BACU000566/1-1308 FDPDSQKVAS VSLDRSIKIW DVTSQATLLT IPKAHTNAIS NCCFTFSGHF ENSP00000253193/1-770 L--------- ---------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 L--------- ---------- ---------- ---------- ---------- bmy_14598T0/1-776 L--------- ---------- ---------- ---------- ---------- ENSTTRP00000011594/1-750 L--------- ---------- ---------- ---------- ---------- 301 350 BACU000566/1-1308 LCTSSWDKTL KIWNVHTGEF RNRGACVTLM QGHEGSVSSC HFARDTSFLV ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ---------- bmy_14598T0/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 351 400 BACU000566/1-1308 SGGFDKTVAI WDVGEGYRKL SLKGHNDWVM DVAISKNKKW ILSASKDKTM ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ---------- bmy_14598T0/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 401 450 BACU000566/1-1308 RLWNIEEIDQ IPLVIEYKKA RGLKLKQCEE CDRPFSIYES DIFSETVTKC ENSP00000253193/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054071/1-770 ---------- ---------- ---------- ---------- ---------- bmy_14598T0/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- ---------- ---------- 451 500 BACU000566/1-1308 VFCRIEAKNL SIEASPSSEG EVSLSREYSR VNIVLTGRLS SAVPALGEAS ENSP00000253193/1-770 ---------- ---------- ---------- VNIFLTGRLS SAV------- ENSBTAP00000054071/1-770 ---------- ---------- ---------- VNIVLTGRFS SAV------- bmy_14598T0/1-776 ---------- ---------- --------PH YPLPPKGEAS TSQ------- ENSTTRP00000011594/1-750 ---------- ---------- ---------- MNIVLTGRLS SAV------- 501 550 BACU000566/1-1308 ISQPPLLTAA CSGKLEQHTE RRGVIYSPAW PLNYPPGTNC SWYIQGDRGD ENSP00000253193/1-770 ---PAL--AA CSGKLEQHTE RRGVIYSPAW PLNYPPGTNC SWYIQGDRGD ENSBTAP00000054071/1-770 ---PAL--AA CSGQLERHTA RRGVIYSPAW PLNYPPGTNC SWYIQGDRGD bmy_14598T0/1-776 ---PPLLTAA CSGKLEQHTE RRGVIYSPAW PLNYPPGTNC SWYIQGDRGD ENSTTRP00000011594/1-750 ---PAL--AA CSGKLEQHTE RRGVIYSPAW PLNYPPGTNC SWYIQGDRGD 551 600 BACU000566/1-1308 MITISFRNFD VEESHQCSLD WLMLGPAAPP RQEAFRLCGS AIPPAFISAR ENSP00000253193/1-770 MITISFRNFD VEESHQCSLD WLLLGPAAPP RQEAFRLCGS AIPPAFISAR ENSBTAP00000054071/1-770 MITISFRNFD VEESHQCSLD WLMLGPAAPP RQEAFRLCGS AIPPAFISAR bmy_14598T0/1-776 MITISFRNFD VEESHQCSLD WLMLGPAAPP RQEAFRLCGS AIPPAFISAR ENSTTRP00000011594/1-750 MITISFRNFD VEESHQCSLD WLMLGPAAPP RQEAFRLCGS AIPPAFISAR 601 650 BACU000566/1-1308 DHVWIFFHSD ASSSGQAQGF RLSYIRGDAG GRAGRAPQCL HMGSWGARAA ENSP00000253193/1-770 DHVWIFFHSD ASSSGQAQGF RLSYIRGKLG QASCQADEF- ---------- ENSBTAP00000054071/1-770 DHVWIFFHSD TSSSGQAQGF RLSYIRGKLG QASCQADEF- ---------- bmy_14598T0/1-776 DHVWIFFHSD ASSSGQAQGF RLSYIRGKLG QASCQADEF- ---------- ENSTTRP00000011594/1-750 DHVWIFFHSD ASSSGQAQGF RLSYIRGKLG QASCQADEF- ---------- 651 700 BACU000566/1-1308 PSIDPPPAGS PPADRSVGAQ CWDGDWSCCC RRVPWSPSRS LTLLHRLGQS ENSP00000253193/1-770 ---------- ----RCDNGK CLPGPWQC-- ---------- ----NTVDEC ENSBTAP00000054071/1-770 ---------- ----RCDNGK CLPGPWQC-- ---------- ----NTVDEC bmy_14598T0/1-776 ---------- ----RCDNGK CLPGPWQC-- ---------- ----NTVDEC ENSTTRP00000011594/1-750 ---------- ----RCDNGK CLPGPWQC-- ---------- ----NTVDEC 701 750 BACU000566/1-1308 GELTPYPQLR SGPGPALAFE GSLPLSWPWS AQGPSPWILP LPGPCRGPAG ENSP00000253193/1-770 GDGSD----- ---------E GN-------- ---------- ----CSAPA- ENSBTAP00000054071/1-770 GDGSD----- ---------E GN-------- ---------- ----CSAPA- bmy_14598T0/1-776 GDGSD----- ---------E GN-------- ---------- ----CSAPA- ENSTTRP00000011594/1-750 GDGSD----- ---------E GN-------- ---------- ----CSAPA- 751 800 BACU000566/1-1308 MGAPHAGCWP QAEGQLCLPL TVSTTHFTPQ GSWARHPARL TSSAVTTASA ENSP00000253193/1-770 ---------S EPPGSLC--- ---------- ---------- ---------- ENSBTAP00000054071/1-770 ---------S EPPGSLC--- ---------- ---------- ---------- bmy_14598T0/1-776 ---------S EPPGSLC--- ---------- ---------- ---------- ENSTTRP00000011594/1-750 ---------S EPPGSLC--- ---------- ---------- ---------- 801 850 BACU000566/1-1308 CRARGSATPW MSVATALMRA TARRPPPSRR AACAPGAPSP AAGRAPRAAC ENSP00000253193/1-770 ---------- ---------- ---------- ----PGGTFP CSG-ARSTRC ENSBTAP00000054071/1-770 ---------- ---------- ---------- ----PGGTFP CSG-ARSTRC bmy_14598T0/1-776 ---------- ---------- ---------- ----PGGTFP CSG-ARSTRC ENSTTRP00000011594/1-750 ---------- ---------- ---------- ----PGGTFP CSG-ARSTRC 851 900 BACU000566/1-1308 LPSGAATALR TAAMAPTRLA APTXXXXXXX GDGSDEAGCP DLACGRRLGS ENSP00000253193/1-770 LP-------- ---------V ERRCDGLQDC GDGSDEAGCP DLACGRRLGS ENSBTAP00000054071/1-770 LP-------- ---------A ERRCDGTQDC GDGSDEAGCP DLACGRRLGS bmy_14598T0/1-776 LP-------- ---------A ERRCDGTQDC GDGSDEAGCP DLACGRRLGS ENSTTRP00000011594/1-750 LP-------- ---------A ERRCDGTQDC GDGSDEAGCP DLACGRRLGS 901 950 BACU000566/1-1308 FYGSFASPDL FGAARGPSDL HCTWLVDTQD PRRVLLQLEL RLGYDDYVQV ENSP00000253193/1-770 FYGSFASPDL FGAARGPSDL HCTWLVDTQD SRRVLLQLEL RLGYDDYVQV ENSBTAP00000054071/1-770 FYGSFASPDL FGAARGPSDL HCTWLVDTQD PRRVLLQLEL RLGYDDYVQV bmy_14598T0/1-776 FYGSFASPDL FGAARGPSDL HCTWLVDTQD PRRVLLQLEL RLGYDDYVQV ENSTTRP00000011594/1-750 FYGSFASPDL FGAARGPSDL HCTWLVDTQD PRRVLLQLEL RLGYDDYVQV 951 1000 BACU000566/1-1308 YEGLGERGDR LLQTLSYRSN HRPVSLEATQ GRLTVAYHAR ARSAGHGFNA ENSP00000253193/1-770 YEGLGERGDR LLQTLSYRSN HRPVSLEAAQ GRLTVAYHAR ARSAGHGFNA ENSBTAP00000054071/1-770 YEGLGERGDR LLQTLSYRSN HRPVSLEAAQ GRLTVAYHAR ARSAGHGFNA bmy_14598T0/1-776 YEGLGERGDR LLQTLSYRSN HRPVSLEAAQ GRLTVAYHAR ARSAGHGFNA ENSTTRP00000011594/1-750 YEGLGERGDR LLQTLSYRSN HRPVSLEAAQ GRLTVAYHAR ARSAGHGFNA 1001 1050 BACU000566/1-1308 TYQVKGYCLP WEQPCGSSRE GDVEDTGEQG CFSEPQRCDG WWHCASGRDE ENSP00000253193/1-770 TYQVKGYCLP WEQPCGSSSD SDGGSLGDQG CFSEPQRCDG WWHCASGRDE ENSBTAP00000054071/1-770 TYQVKGYCLP WEQPCGSSRE GDAEDPGEQG CFSEPQRCDG WWHCASGRDE bmy_14598T0/1-776 TYQVKGYCLP WEQPCGSSRE GDVEDTGEQG CFSEPQRCDG WWHCASGRDE ENSTTRP00000011594/1-750 TYQVKGYCLP WEQPCGSSRE GDVDDAGEQG CFSEPQRCDG WWHCASGRDE 1051 1100 BACU000566/1-1308 QGCPACPPDQ YPCEGGSGLC YTPADRCNNQ KSCPDGADEK NCFSCQPGTF ENSP00000253193/1-770 QGCPACPPDQ YPCEGGSGLC YTPADRCNNQ KSCPDGADEK NCFSCQPGTF ENSBTAP00000054071/1-770 QGCPACPPDQ YPCEGGSGLC YTPADRCNNQ KSCPDGADEK NCFSCQPGTF bmy_14598T0/1-776 QGCPACPPDQ YPCEGGSGLC YTPADRCNNQ KSCPDGADEK NCFSCQPGTF ENSTTRP00000011594/1-750 QGCPACPPDQ YPCEGGSGLC YTPADRCNNQ KSCPGGADEK NCFSCQPGTF 1101 1150 BACU000566/1-1308 HCGTNLCIFE TWRCDGQEDC QDGSDEHGCL AAVPRKVITA ALIGSLVCGL ENSP00000253193/1-770 HCGTNLCIFE TWRCDGQEDC QDGSDEHGCL AAVPRKVITA ALIGSLVCGL ENSBTAP00000054071/1-770 HCGTNLCIFE TWRCDGQEDC QDGSDEHGCL AAVPRKVITA ALIGSLVCGL bmy_14598T0/1-776 HCGTNLCIFE TWRCDGQEDC QDGSDEHGCL AAVPRKVITA ALIGSLVCGL ENSTTRP00000011594/1-750 HCGTNLCIFE TWRCDGQEDC QDGSDEHGCL AAVPRKVITA ALIGSLVCGL 1151 1200 BACU000566/1-1308 LLVIALGCAF KLYSLRTQEY RAFETQMTRL EAEFVRREAP PSYGQLIAQG ENSP00000253193/1-770 LLVIALGCAF KLYSLRTQEY RAFETQMTRL EAEFVRREAP PSYGQLIAQG ENSBTAP00000054071/1-770 LLVIALGCAF KLYSLRTQEY RAFETQMTRL EAEFVRREAP PSYGQLIAQG bmy_14598T0/1-776 LLVIALGCAF KLYSLRTQEY RAFETQMTRL EAEFVRREAP PSYGQLIAQG ENSTTRP00000011594/1-750 LLVIALGCAF KLYSLRTQEY RAFETQMTRL EAEFVRREAP PSYGQLIAQG 1201 1250 BACU000566/1-1308 LIPPVEDFPV YSASQ----- ---------- ---------- ---------- ENSP00000253193/1-770 LIPPVEDFPV YSASQASVLQ NLRTAMRRQM RRHASRRGPS RRRLGRLWNR ENSBTAP00000054071/1-770 LIPPVEDFPV YSASQASVLQ NLRTAMRRQM RRHASRRGPS RRRLGRLWNR bmy_14598T0/1-776 LIPPVEDFPV YSASQ----- -----MRRQM RRHASRRGPS RRRLGRLWNR ENSTTRP00000011594/1-750 LIPPVEDFPV YSASQASVLQ NLRTDMRRQM RRHDSRRGPS RRRLGRIWNR 1251 1300 BACU000566/1-1308 ---------- ---------- ---------- ---------- ---------- ENSP00000253193/1-770 LFHRPRAPRG QIPLLTAARP SQTVLGDGFL QPAPGAAPDP PAPLMDTGST ENSBTAP00000054071/1-770 LFHRPRAPRG QIPLLTAART SQTVLGDGLL QPAPGAARDP PAPLTDTSSP bmy_14598T0/1-776 LFHRPRAPRG QIPLLTAART SQTVLGDGLL QPAPGAGLDP PAPRTDTGSP ENSTTRP00000011594/1-750 LFHRPRAPRG QIPLLTAART SQTVLGDGLL QPAPGAGLDP PAPLTDTGSP 1301 1350 BACU000566/1-1308 ---------- ------VGPS APP-PSGLRD P-EARPVHKD RKAGRDPLVD ENSP00000253193/1-770 RAAGDRPPSA PGRAPEVGPS GPPLPSGLRD P-ECRPVDKD RKVCREPLVD ENSBTAP00000054071/1-770 GAAGEGSPGA PSHASEVGPP VPP-PSGLRD PLESRPADKD RKAGRDPLVD bmy_14598T0/1-776 GAAGEGPPGA PSHAPEVGPS APP-PSGLRD P-EARPVHKD RKAGRDPLVD ENSTTRP00000011594/1-750 GAAGEGPPGA PSHAPEVGPS VPP-TSGLRD P-EARPAHKD RKAGRDPLVD 1351 1400 BACU000566/1-1308 TPTPVDMPRE SCSAQGPHPP APTAGSTLGP HPPEPLGVCR SPPPPCSPTL ENSP00000253193/1-770 GPAPADAPRE PCSAQDPHPQ VSTASSTLGP HSPEPLGVCR NPPPPCSPML ENSBTAP00000054071/1-770 SPAPVDVPQE SCSGQDPHPP ALTAGSTLGP HPSEPLGVCR SPPPPCSPTL bmy_14598T0/1-776 NPAPVDMPRE SCSAQGPHPP APTAGSTLGP HPPEPLGVCR SPPPPCSPTL ENSTTRP00000011594/1-750 NPAPVDMPRA SCSAQGPHPP APTAGSTLGP HPPEPLGVCR SPPPPCSPTL 1401 1450 BACU000566/1-1308 EASDDEALLV C ENSP00000253193/1-770 EASDDEALLV C ENSBTAP00000054071/1-770 EASDDEALLV C bmy_14598T0/1-776 EASDDEALLV C ENSTTRP00000011594/1-750 EASDDEALLV C