KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:26 2014 Check: 00 .. Name: bmy_20977T0/1-503 Len: 993 Check: 7779 Weight: 1.00 Name: ENSP00000301011/1-953 Len: 993 Check: 2287 Weight: 1.00 Name: ENSBTAP00000054096/1-961 Len: 993 Check: 5798 Weight: 1.00 Name: BACU004291/1-930 Len: 993 Check: 5608 Weight: 1.00 Name: ENSTTRP00000005902/1-939 Len: 993 Check: 3029 Weight: 1.00 // 1 50 bmy_20977T0/1-503 ---------- ---------- --------MS GFST------ ---------- ENSP00000301011/1-953 --------MD VAESPERDPH SPED-EEQPQ GLSDDDILRD SGSDQDLDGA ENSBTAP00000054096/1-961 --------MD VAESPDRDPR SPEDEEEEQQ GLSDDDILRE SGSEQDLDAA BACU004291/1-930 MAAQPWVPMD VAESPDRDPR SPEDEEEEQQ GLSDDDILRE SGSEQDLDGA ENSTTRP00000005902/1-939 --------MD VAESPDRDPR SPEDEEEEQQ GLSDDDILRE SGSEQDLDGA 51 100 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 GVRASDLEDE ESAARGPSQE EEDNHSDEED RASEPKSQDQ DSEVNELSRG ENSBTAP00000054096/1-961 GGRASDLEDE ESVAPGLSQE DEESRSDEDD R--------- DSEAQELSRG BACU004291/1-930 EGRASDLEAE GSAAPGLSQE EEESHTDEED R--------- DSEAQELSGG ENSTTRP00000005902/1-939 GGRASDAEDE ENVAPGLSQE EEESRSDEED R--------- DSEAPELSGG 101 150 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 PTSSPCEEEG DEGEEDRTSD LRDEASSVTR ELDEHELDYD -EEVPEEPAP ENSBTAP00000054096/1-961 PASPP-RAEG -----DCASD LRDEASSVTR DLDEHELDYD -EEVPEEPAP BACU004291/1-930 PASPP-RAKG ARGEEDRTSD LRDEASSVTR DLDEHELDYD EEEVPEEPAP ENSTTRP00000005902/1-939 PASPP-RAEG DRGEEDRTSD LRDEASSVTR DLDEHELDYD -EEVPEEPAP 151 200 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 AVQEDEAEKA GAEDDEEKGE GTPREEGKAG VQSVGEKESL EAAKEKKKED ENSBTAP00000054096/1-961 GAQEDDAEKA GPEDDEERGE GAPGEEGKVG VRTVEDKEPP EAAKEKRKED BACU004291/1-930 AAQEDDTEKA GPEEDEERGE GAPGQDGKAG VRGVEDREPV EAAKEKRKED ENSTTRP00000005902/1-939 ATHEDDTEKA GPEDDEERGE GAPGEDGKAG VHGVEDREPV EAAKEKRKED 201 250 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 DDGEIDDGEI DDDDLEEGEV KDPSDRKVRP RPTCRFFM-- ---------- ENSBTAP00000054096/1-961 DDGEIDDGEI DDDDLEEGEV KDPSDRKVRP RPTCRFFMKD VVTPLSTPPP BACU004291/1-930 DDGEIDDGEI DDDDLEEGEV KDPSDRKVRP RPTCRFFM-- ---------- ENSTTRP00000005902/1-939 DDGEIDDGEI DDDDLEEGEV KDPSDRKVRP RPTCRFFM-- ---------- 251 300 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 ---------- -KGNCTWGMN CRFIHPGVND KGNYSLITKA DPFPPNGAPP ENSBTAP00000054096/1-961 ISNSIPFRGQ VKGNCTWGMN CRFIHPGVND KGNYSLITKA EPFPPNGAPP BACU004291/1-930 ---------- -KGNCTWGMN CRFIHPGVND KGNYSLITKA EPFPPNGAPP ENSTTRP00000005902/1-939 ---------- -KGNCTWGMN CRFIHPGVND KGNYSLITKA EPFPPNGAPP 301 350 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 LGPHPLMPAN PWGGPVVDEI LPPPPPEPPT ESAWERGLRH AKEVLKKATI ENSBTAP00000054096/1-961 LGPHPLMPAN PWGGPVVDEI LPPPPPEPPT ESAWERGLRH AKEVLKKATI BACU004291/1-930 LGPHPLMPAN PWGGPVVDEI LPPPPPEPPT ESAWERGLRH AKEVLKKATI ENSTTRP00000005902/1-939 LGPHPLMPAN PWGGPVVDEI LPPPPPEPPT ESAWERGLRH AKEVLKKATI 351 400 bmy_20977T0/1-503 ---------- ---------- ---------- ---------- ---------- ENSP00000301011/1-953 RKEQEPDFEE KRFTVTIGED EREFDKENEV FRDWNSRIPR DVRDTVLEPY ENSBTAP00000054096/1-961 RKEQEPDFEE KRFTVTIGED EREFDKENEV FRDWNYRITR DVRDTALEPY BACU004291/1-930 RKEQEPDFEE KRFTVTIGED EREFDKENEV FRDWNYRITR DVRDAALEPY ENSTTRP00000005902/1-939 RKEQEPDFEE KRFTVTIGED EREFDKENEV FRDWNYRITR DVRDTALEPY 401 450 bmy_20977T0/1-503 ---------- ---------- ---------- ----KERERE RERENRQRER ENSP00000301011/1-953 ADPYYDYEIE RFWRGGQYEN FRVQYTETEP YHNYRERERE RERENRQRER ENSBTAP00000054096/1-961 ADPYYDYEIE RFWRGGQYEN FRVQYTEAEP YHNYRERERE RERENRQRER BACU004291/1-930 ADPYYDYEIE RI-------- ---------- -----ERERE RERENRQRER ENSTTRP00000005902/1-939 ADPYYDYEIE RFWRGGQYEN FRVQYTEAEP YHSYRERERE RERENRQRER 451 500 bmy_20977T0/1-503 ERERERDRER ERRQRERERE RERERDKERQ RRKEEWERER AKRDEKDRQH ENSP00000301011/1-953 ERERERDRER ERRQRERERE RERERDKERQ RRKEEWERER AKRDEKDRQH ENSBTAP00000054096/1-961 ERERERDRER ERRQRERERE RERERDKERQ RRKEEWERER AKRDEKDRQH BACU004291/1-930 ERERERDRER ERRQRERERE RERERDKERQ RRKEEWERER AKRDEKDRQH ENSTTRP00000005902/1-939 ERERERDRER ERRQRERERE RERERDKERQ RRKEEWERER AKRDEKDRQH 501 550 bmy_20977T0/1-503 RERDKERDKE KE--KPKARS PQPPSRQAEP PKKETASAGP QVKRADEWKD ENSP00000301011/1-953 RDRDREKERE KEKGKPKPRS PQPPSRQAEP PKKEAATTGP QVKRADEWKD ENSBTAP00000054096/1-961 RDRDKEREKD KE--KPKARS PQPPSRQAEP PKKETVSTGP QVKRADEWKD BACU004291/1-930 RERDKERDKE KE--KPKARS PQPPSRQAEP PKKETASAGP QVKRADEWKD ENSTTRP00000005902/1-939 RERDKEREKE KE--KPKARS PQPPSRQAEP PKKETASAGP QVKRADEWKD 551 600 bmy_20977T0/1-503 PWRRSKSPKK KLGVSVSPSR ARRRRKTSAS SASASNSSRS SSRSSSYSGS ENSP00000301011/1-953 PWRRSKSPKK KLGVSVSPSR ARRRRKTSAS SASASNSSRS SSRSSSYSGS ENSBTAP00000054096/1-961 PWRRSKSPKK KLGVSVSPSR ARRRRKTSAS SASASNSSRS SSRSSSYSGS BACU004291/1-930 PWRRSKSPKK KLGISVSPSR ARRRRKTSAS SASASNSSRS SSRSSSYSGS ENSTTRP00000005902/1-939 PWRRSKSPKK KLGVSVSPSR ARRRRKTSAS SASASNSSRS SSRSSSYSGS 601 650 bmy_20977T0/1-503 GSSRSRSRSS SYSSYSSRSS RRSSFSGSR- SR-------- ---------- ENSP00000301011/1-953 GSSRSRSRSS SYSSYSSRSS RHSSFSGSR- SRSRSFSSSP SPSPTPSPHR ENSBTAP00000054096/1-961 GSSRSRSRSS SYSSYSSRSS RHSSFSGSRS SRSRSFSSSP SPSPTPSPHR BACU004291/1-930 GSSRSRSRSS SYSSYSSRSS RRSSFSGSR- SRSRSFSSSP SPSPTPSPHR ENSTTRP00000005902/1-939 GSSRSRSRSS SYSSYSSRSS RHSSFSGSR- SRSRSFSSSP SPSPTPSPHR 651 700 bmy_20977T0/1-503 ---------C VPEAQQVPVL LLVPVPIP-- ------DAFA AQTCQNQGGA ENSP00000301011/1-953 PSIRTKGEPA PPPGKAGEKS VKKPAPPPAP PQATKTTAPV PEPTKP-GDP ENSBTAP00000054096/1-961 P-ARAKGEPA PPPTKAGEKL LKKPAPPPAL PQAPKTTT-A PEPTKPGGDP BACU004291/1-930 P-VRTKGEPA PPPAKAGEKL LKKPAPPPAP PQAPKTTTPA PEPAKP-GDL ENSTTRP00000005902/1-939 P-VRTKGEPA PPPAKAGEKL LKKPAPPPAP PQAPKATAPA PEPTKP-GDL 701 750 bmy_20977T0/1-503 GSASCKSR-- --------AS GL--GLGRRC RRACA-CRSL SVSSVSSVSS ENSP00000301011/1-953 REARRKERPA RTPPRRRTLS GSGSGSGSSY SGSSSRSRSL SVSSVSSVSS ENSBTAP00000054096/1-961 REARRRERQA RSPPRRRTVS GS--GSGSSY SGSSSRSRSL SVSSVSSVSS BACU004291/1-930 REARRRERQS RSPPRRRTVS GS--GSGSSY SSSSSRSRSL SVSSVSSVSS ENSTTRP00000005902/1-939 REARRRERQA RSPPRRRTVS GS--GSGSSY SGSSSRSRSL SVSSVSSVSS 751 800 bmy_20977T0/1-503 ATSSSSSARS VGSDDMYADL ASPVSSASSP SPAPAPARKE RGKSKKEDGV ENSP00000301011/1-953 ATSSSSSAHS VDSEDMYADL ASPVSSASSR SPAPAQTRKE KGKSKKEDGV ENSBTAP00000054096/1-961 ATSSSSSAHS VDSDDMYADL ASPVSSASSR SPTPAQTKKE KGKSKKEDGV BACU004291/1-930 ATSSSSSAHS VDSDDMYADL ASPVSSASSR SPTPAQAKKE KGKSKKEDGV ENSTTRP00000005902/1-939 ATSSSSSAHS VDSDDMYADL ASPVSSASSR SPTPAQTKKE KGKSKKEDGV 801 850 bmy_20977T0/1-503 KADKRKRDPS TQPPRPSRTP AGGRSSQQPT TPQQAPPGQP PPAAFVAHKE ENSP00000301011/1-953 KEEKRKRDSS TQPPKSAKPP AGGKSSQQPS TPQQAPPGQP QQGTFVAHKE ENSBTAP00000054096/1-961 KVDKRKRDSS TQPPKPSRTP AGGRSSQQPT TPQQAPPGQP PAATFIAHKE BACU004291/1-930 KADKRKRDPS TQPPKPSRTP AGCRSSQQPT TPQQAPPGQP PPAAFIAHKE ENSTTRP00000005902/1-939 KADKRKRDPS TQPPKPSRTP AGGRSSQQPT TPQQAPPGQP PPATFIAHKE 851 900 bmy_20977T0/1-503 IKLTLLNKPL RSWPRVELGP LSYLVLCRP- ---------- GSRDRKSGGR ENSP00000301011/1-953 IKLTLLNKAA DKGSRKRYEP SDKDRQSPPP AKRPNTSPDR GSRDRKSGGR ENSBTAP00000054096/1-961 IKLTLLNKAT DKGSRKRYEP SDKDRQSPPP AKRANLSPDR GSRDRKSGGR BACU004291/1-930 IKLTLLNKAA DKGSRKRYEP SDKDRQSPPP AKRANLSPDR GSRDRKSGGR ENSTTRP00000005902/1-939 IKLTLLNKAA DKGGRKRYEP SDKDRQSPPP AKRANLSPDR GSRDRKSGGR 901 950 bmy_20977T0/1-503 LSSPKPERQR GQNSKAPAAP TDRKRPLSPQ SKSSSKVTSV PGKASDSSVA ENSP00000301011/1-953 LGSPKPERQR GQNSKAPAAP ADRKRQLSPQ SKSSSKVTSV PGKASDPGAA ENSBTAP00000054096/1-961 VSSPKPERQR GQNSKAPSAP TDRKRPLSPQ SKSSSKVTSV PGKASDTSTT BACU004291/1-930 LSSPKPERQR GQNSKAPAAP TDRKRPLSPQ SKSSSKVTSV PGKASDSSAA ENSTTRP00000005902/1-939 LSSPKPERQR GQNSKAPAAP TDRKRPLSPQ SKSSSKVTSV PGKASDTSAA 951 1000 bmy_20977T0/1-503 AGASTGTKSG KASTLSRREE LLKQLKAVED AIARKRAKIP GKV ENSP00000301011/1-953 -----STKSG KASTLSRREE LLKQLKAVED AIARKRAKIP GKA ENSBTAP00000054096/1-961 --ATAGTKSG KASTLSRREE LLKQLKAVED AIARKRAKIP GKV BACU004291/1-930 AGASTGTKSG KASTLSRREE LLKQLKAVED AIARKRAKIP GKV ENSTTRP00000005902/1-939 AGASTGTKS- KTSTLSRREE L---LQLAVD AIARK-AKIP GKV