KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:31 2014 Check: 00 .. Name: ENSP00000379034/1-594 Len: 1175 Check: 343 Weight: 1.00 Name: ENSBTAP00000054106/1-589 Len: 1175 Check: 4359 Weight: 1.00 Name: bmy_14612T0/1-1166 Len: 1175 Check: 3330 Weight: 1.00 Name: BACU013518/1-912 Len: 1175 Check: 7294 Weight: 1.00 // 1 50 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 MTQGVSEADG PGWGWDGDGD EDWDGAVLTL LALAVVAATA LALHWFGSGQ BACU013518/1-912 MTQGVSEADG PGWGWDGDGD EDWDGAVLTL LALAVVAATA LALHWFGSGQ 51 100 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 DQEAAGPAST APRPSQVGGP GPALPPKSKV SGGVKGHSSG QGKPYPPGRG BACU013518/1-912 DQEAAGPAST APRPSQVGGP GPALPPKSKV SGGVAGHSSG QGKPYPPGRG 101 150 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 QGSAAAAGAQ DQEPPRGGGL AATATPPLKT PGEVASGGAL GQQRGNATPE BACU013518/1-912 QGSPAAAGAQ DQEPPRGGGL AATATPPLKT PGEVASGGAL GQQRGNATPE 151 200 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 APRGKGREPR RPGAALLGRS KAEGTSVPLL IHFTPRSPGG EVEVQVEAGG BACU013518/1-912 APRGKGREAR RPGAALLGRS KAEGTSVPLL IHFTPRSPGG EVEVQVEAGG 201 250 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 VQAKAPAHQA LVHMVERDTS PWPQGVASPG SLGRGPGSRR WQVDRSSGER BACU013518/1-912 VQAKAPAHQA LVHMVERDTS PWQQGVASPG SLGRGPGSRR WQVDRSSGER 251 300 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 TCRSPRLDPL SLGTVVSVWD SVGAASSLPA GSQGLPFPQE LPPSYTLKTR BACU013518/1-912 TCRSPRLDPL SLGNVVSVWD SVGAASSLPA GSQGLPFPQE LPPSYTLKTR 301 350 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 PPMDVSERGR GKSSPQPAPV LALDSGAKAT ESREAGTLAP RESQRSPASM BACU013518/1-912 PPMDVSERGR GKSSPQPAPV LALDSGAKAT ESREAGTLAP RESQRSPASM 351 400 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 EGWPWVRREV LVTGSFSQAP GSMGLSQEGP QGGHPLLSQG EGTTEASTAG BACU013518/1-912 EGWPWVRREV LVTGSFSQAP DSMGLSQEGP QGGHPHLSQG EGTTEASTAG 401 450 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 EAGANGSGDH PFFSSGPGGT KEQGGHSVRE GRGSLQGQVA GGSDRGKRAA BACU013518/1-912 ESGANGSGDH PVFSSGPGGT KEQGGHSVRE GRGSLQGQVA GGSDRGKRAA 451 500 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 EVRSCMPSLS PSLTSSPRTP NPLPPTARPH PGLLPVAPTL LTSSLSVSLP BACU013518/1-912 EVRSCMPSLS PSLTSSPRTP NPLPPTARPH PGLLPVAPTL LTSSLSVSLP 501 550 ENSP00000379034/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054106/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14612T0/1-1166 PRVGQGPAED ENLKAVPSPA PGPSPVTAAA PGPASGSRLA SQKPSVVLCK BACU013518/1-912 PRVGQGPAED ENLKAVPSPA PGPSPVTAAA PGPASGSRLA SQKPSVVLCK 551 600 ENSP00000379034/1-594 ---------- ------MVLR SHPFPRQDRP QGSVPRAVPG SPVGPSTSTH ENSBTAP00000054106/1-589 ---------- ------MVLR SHPFPRPERP QGRAPRAALE GPSHPGAALS bmy_14612T0/1-1166 GSQEGQFSTS WGNLISMVLR SHPFPRPERP QGRVPRAALE SPRDPSTSTP BACU013518/1-912 GSQEGQFSTS WGNLISMVLR SHPFPRPERP QGRVPRAALE SPRDPSTSTP 601 650 ENSP00000379034/1-594 SEDRHGPSS- ---------- --SVGTVIGT GTGGLVEAGG QPQPRSSETN ENSBTAP00000054106/1-589 SENRESAAPP E------EDR HGAEDLATRA GPGGLEEAGA RPQQSHTETE bmy_14612T0/1-1166 SENRESGSSP EEAVPSREDR HGSAGLVT-- --GGLAEAGA RPQQSSTETN BACU013518/1-912 SENRESGSSP EEAVPSREDR RGSAGLVT-- --GGLAEAGA PPQQSSTETN 651 700 ENSP00000379034/1-594 GSPSPDPPPG LRGEGTREKS LDPLPQ-AAM PRGPAQPPAQ RPPGPAASSS ENSBTAP00000054106/1-589 GAAAEGTPSG PRGDRTEEKY PDSLLQGATE PIAPSPLPEQ TQPGSSSSLA bmy_14612T0/1-1166 EAPTAGPPSG PRGERIEEKP PDSLPPGAAE PRAPSWPPEQ TQPGPAPSPV BACU013518/1-912 EAPTAGPPSG PRGERIEEKP PDSLPPGAAE PRAPSWPPEQ TQPGPAPSPV 701 750 ENSP00000379034/1-594 ARR-SQPVPQ LRKRSRCEIA PSSEQEVRPA ASGDPQGEAP GEGGSPAGRS ENSBTAP00000054106/1-589 TRQDPQPVPP SRKRSLCEMS QSPKQEASRV A--------P GAGPRPSGHR bmy_14612T0/1-1166 TRRDSQPVPR PRKRSLCEIS QSSEREASPA APGQRRGQEP GEGPSPAGSG BACU013518/1-912 TRRDSQPVPR PRKRSLCEIS QSSEREASPA APGQRRGQEP GEGPSPAGSG 751 800 ENSP00000379034/1-594 GALTEKQEEA RKLMVFLQRP GGWGVVEGPR KPSSRALEPA TAAALRRRLD ENSBTAP00000054106/1-589 QGLGEKQEEA RKLMMFLQRP GGWGVAEGPR KSRAS----- -VVALPRWLD bmy_14612T0/1-1166 QVLTEKQKEA RKLMVFLQRP GGWGVVEGPQ KPRSLA---- -AAALQRWLD BACU013518/1-912 QVLTEKQQEA RKLMVFLQRP GGWGVVEGPQ KPRSLA---- -AAALQRWLD 801 850 ENSP00000379034/1-594 LGSCLDVLAF AQQHGEPGLA QETYALMSDN LLRVLGDPCL YRRLSAADRE ENSBTAP00000054106/1-589 LGSCLEALAF AQQHGDPGLA QETYAWMSDN LLHVLRDPSL YRQLSGADRE bmy_14612T0/1-1166 LGSCLEALAF AQQHGDPSLA QETYAWMSDN LLHVLGDPSL YRQLSGADRE BACU013518/1-912 LGSCLEALAF AQQHGDPGLA QETYAWMSDN LLHVLGDPSL YRQLSGADRE 851 900 ENSP00000379034/1-594 RILSLRTGRG RAVLGVLVLP SLYQGGRSGL PRGPRGEEPP AAAPVSLPLP ENSBTAP00000054106/1-589 RIVSLRTSRG PAVLGALVLP GLYRASRSEL TRGSPAAEAL AVGPAALPPP bmy_14612T0/1-1166 RILSLRTSRG QAVLGVLVLP SLYRVSRSGL TRDPRGVEAP AVRPAPPPPR BACU013518/1-912 RILSLRTSRG QAVLGVLVLP SLYR------ ---------- ---------- 901 950 ENSP00000379034/1-594 AHLHVFNPRE NTWRPLTQVP EEAPLRGCGL CTMHNYLFLA GGIRGSGAKA ENSBTAP00000054106/1-589 AYLHVFHPGE NSWRPLTKVP QEAPLRGCGL CTLHNYLFLA GGVRGSGAEA bmy_14612T0/1-1166 TYLHVFHPRE NAWRPLTQVP QEAPLRGCGL CTLHNYLFLA GGIRGSGAEA BACU013518/1-912 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000379034/1-594 VCSNEVFCYN PLTNIWSQVR PMQQARAQLK LVALDGLLYA IGGECLYSME ENSBTAP00000054106/1-589 VCCNEVFCYN PLTNIWSQVR PMQQARAQLK LVALDGLLYA IGGECLYSME bmy_14612T0/1-1166 VCSNEVFCYN PLTNIWSQVR PMQQARAQLK LVALDGLLYA IGGECLYSME BACU013518/1-912 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000379034/1-594 CYDPRTDAWT PRAPLPAGTF PVAHEAVACR GDIYVTGGHL FYRLLRYSPV ENSBTAP00000054106/1-589 CYDPRTDAWS PRAPLPAGAF PVAHDAVACQ GDIYVTGGHL FHRLLRYRPT bmy_14612T0/1-1166 RYDPRTDAWT SRAPLPAGTF PVAHEAVACR GDIYVTGGHL FYRLLRYSPA BACU013518/1-912 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000379034/1-594 KDAWDECPYS ASHRRSSDIV ALGGFLYRFD LLRGVGAAVM RYNTVTGSWS ENSBTAP00000054106/1-589 KDAWDECPYS ASHRRSSDMV ALGGFLYRFD LLRGVGAAVM RYNTVTSSWS bmy_14612T0/1-1166 KDAWDECPYS ASHRRSSDIV ALGGFLYRFD LLRGVGAAVM RYNTVTSSWS BACU013518/1-912 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000379034/1-594 RAASLPLPAP APLHCTTLGN TIYCLNPQVT ATFTVSGGTA QFQAKELQPF ENSBTAP00000054106/1-589 RAASLPLPAP APLRCAVLGN TIYCLNHQVT ATFTVSEGTA QFQAKELQPF bmy_14612T0/1-1166 RAASLPLPDP APLRCAVLGN TIYCLNHQVT ATFTVSEGTA QFQAKGLQPF BACU013518/1-912 ---------- ---------- --------VT ATFTVSEGTA QFQAKELQPF 1151 1200 ENSP00000379034/1-594 PLGSTGVLSP FILTLPPEDR LQTSL ENSBTAP00000054106/1-589 PLETKGVLCP FTLTLPARGP LQTAL bmy_14612T0/1-1166 PPGAKGVLCP FILTLPPVDP LQTAL BACU013518/1-912 PPGAKGVLCP FILTLPPVDP LQTAL