KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:23:32 2014 Check: 00 ..
Name: ENSP00000386141/1-373 Len: 397 Check: 9123 Weight: 1.00
Name: ENSBTAP00000054112/1-367 Len: 397 Check: 946 Weight: 1.00
Name: bmy_06864T0/1-292 Len: 397 Check: 6470 Weight: 1.00
Name: BACU020588/1-373 Len: 397 Check: 2584 Weight: 1.00
Name: ENSTTRP00000016548/1-372 Len: 397 Check: 9436 Weight: 1.00
//
1 50
ENSP00000386141/1-373 MKYTKQNFMM SVLGIIIYVT DLIVDIWVSV RFFHEGQYVF SALALSFMLF
ENSBTAP00000054112/1-367 MKYTKFNFMM SVLGIMIYVT DLIVDIWVSV RFFHERQYVF GVLTVSFMLF
bmy_06864T0/1-292 MKNTTEAT-- ---------- ---------- ---------- ------FLYL
BACU020588/1-373 MKYTKLNFMM SVLGIVIYVI DLIVDIWVSV RFFHEGQYVF GILTVSFMLF
ENSTTRP00000016548/1-372 MKYTKLNFMM SVLGIIIYVT DLIVDIWVSV RFFYEGQYVF GILTVSFMLF
51 100
ENSP00000386141/1-373 GTLVAQCFSY SWFKADLKKA GQESQHCFLL LHCLQGGVFT RYWFALKRGY
ENSBTAP00000054112/1-367 GTLVVQCFSY SWFKADLKEA GQESHHCFLL LHCLQGGVFT RYWFALKQGY
bmy_06864T0/1-292 GSQM------ ---------- ---------- ---------- -YWFALKKGY
BACU020588/1-373 GTLVVQCFSY SWFKNDLKES GQESQHCFLL LHCLQGGVFT RYWFALKKGY
ENSTTRP00000016548/1-372 GTLVVQCFSY SWFKDDLKES GQESQHCFLL LHCLQGGVFT RYWFALKR-Y
101 150
ENSP00000386141/1-373 HAAFKYDSNT SNFVEEQIDL HKEVIDRVTD LSMLRLFETY LEGCPQLILQ
ENSBTAP00000054112/1-367 QVAFKYSSKT ENFVEKQIN- -----DRVTD LSMLRLFETY LEGCPQLALQ
bmy_06864T0/1-292 HVAFKYTSKT DNFVEEQIDP HKEVIDRVTD LSMLRLFETY LEGCPQLALQ
BACU020588/1-373 HVAFKYTSKT DNFVEEQIDP HKEVIDRVTD LSMLRLFETY LEGCPQLALQ
ENSTTRP00000016548/1-372 HVAFKYTSKT DNFVEEQIDP HKEVIDRVTD LSMLRLFETY LEGCPQLALQ
151 200
ENSP00000386141/1-373 LYILLEHGQA NFSQYAAIMV SCCAISWSTV DYQVALRKSL PDKKLLNGLC
ENSBTAP00000054112/1-367 LYIFLEHGQA NFTQYAAIMV SCCAVSWSTV DYQIALRKSL PDKNLLNGPC
bmy_06864T0/1-292 LYILLEHD-- -----AAIMV SCCAISWSTV DYQVALRKSL PDKNLLNGPC
BACU020588/1-373 LYILLEHGQE NFTQYAAIMV SCCAISWSTV DYQVALRKSL PDKNLLNGPC
ENSTTRP00000016548/1-372 LYILLEHGQE NFTQYAAIMV SCCAISWSTV DYQVALRKSL PDKNLLNGPC
201 250
ENSP00000386141/1-373 PKITYLFYKL FTLLSWMLSV VLLLFLNVKI ALFLLLFLWL LGIIWAFKNN
ENSBTAP00000054112/1-367 PKLVYLFYKL FTLLSWMLSV VLLLFLNVKI AFLLLFFLWI LGIYWAFKKQ
bmy_06864T0/1-292 PKLVYLFYKL FTLLSWMLS- ---------- ---------- --ILWAFKEQ
BACU020588/1-373 PKLVYLFYKL FTLLSWMLSV VLLLFLNVKI ALLLLLFLWF LGVLWAFKEQ
ENSTTRP00000016548/1-372 PKLVYLFYKL FTLLSWMLSV VLLLFLNVKI ALFLLLFLWF LGILWAFKEQ
251 300
ENSP00000386141/1-373 TQFCTCISME FLYRIVVGFI LIFTFFNIKG QNTKCPMSCY YIVRVLGTLG
ENSBTAP00000054112/1-367 TDFCVSTSME ILYRIVVGFI LTFTFFNIKG QNTKCPMSCY YIVRVLVTLG
bmy_06864T0/1-292 TEFCASISME FIYRIVVGFI LVFTFFNIKG QNTKCPMSCY YIVRVLATLG
BACU020588/1-373 TEFCASRSME FIYRIVVGFI LVFTFFNIKG QNTKCPMSCY YIVRVLATLG
ENSTTRP00000016548/1-372 TDFCASIGME FIYRIVVGFI LVFTFFNIKG QNTKCPMSCY YIVRVLATLG
301 350
ENSP00000386141/1-373 ILTVFWVCPL TIFNPDYFIP ISITIVLTLL LGILFLIVYY GSFHPNRSAE
ENSBTAP00000054112/1-367 ILIVFWFYPL SIFNADYFIP VSITIVLSLL LGIIFLLVYY GTLHPNRSEE
bmy_06864T0/1-292 ILIVFWFYPL SIFNSDYFIP VSITIALTLL LGIIFLIVYY GTLHPNRSEE
BACU020588/1-373 ILIVFWFYPL SIFNSDYFIP VSITIALTLL LGIIFLIVYY GTLHPNRSEE
ENSTTRP00000016548/1-372 ILIVFWSYPL SIFNSDYFIP VSITIALTLL LGIIFLIVYY GTLHPNRSEE
351 400
ENSP00000386141/1-373 TKCDEIDGKP VLRECRMR-- ---------- ---------- YFLME--
ENSBTAP00000054112/1-367 TKLDEVDGKP IQRDCRMK-- ---------- ---------- HFLME--
bmy_06864T0/1-292 TKLDEVDGKP VQRDCRMKSG TAFQGVVLIT LSISLCSCWS FTSIEKI
BACU020588/1-373 TKLDEVDGKP VQRDCRMK-- ---------- ---------- YFLME--
ENSTTRP00000016548/1-372 TKLDEADGKP VQRDCRMK-- ---------- ---------- YFLME--