KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:32 2014 Check: 00 .. Name: ENSBTAP00000054113/1-329 Len: 341 Check: 9021 Weight: 1.00 Name: ENSP00000473383/1-334 Len: 341 Check: 8610 Weight: 1.00 Name: ENSTTRP00000015312/1-335 Len: 341 Check: 3973 Weight: 1.00 Name: bmy_01539T0/1-335 Len: 341 Check: 4783 Weight: 1.00 Name: BACU003696/1-212 Len: 341 Check: 6276 Weight: 1.00 // 1 50 ENSBTAP00000054113/1-329 MKSAVGLRRG GSGGRGGGGW G--------- GGRGGGAGKG AGGDGGGPGG ENSP00000473383/1-334 MKSAASSRGG GGGGRGGGGW G----SWGGG RGGGGGAGKG GGGDGGGQGG ENSTTRP00000015312/1-335 MKSAVSARGG VSGGRGGGCW GGGRGGGGGG GGKGGGGGKG PGGDGGGQGG bmy_01539T0/1-335 MKSAVSARGG VSGGRGGGCW GRGR-GGGGG GSKGGGGGKG AGGDGGGPGG BACU003696/1-212 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000054113/1-329 KGGFGARTRG F-GGGRGRGR GGAGGDGRGD RGGGGQLR-G VAKNKNRRRK ENSP00000473383/1-334 KGGFGARARG FGGGGRGRGR G--GGDGK-D RGGGGQRRGG VAKSKSRRRK ENSTTRP00000015312/1-335 KGGFGARTRG F-GGGRGRGR G--GGDGR-D RGGGGQRR-G VAKSKNRRRK bmy_01539T0/1-335 KGGFGARTRG F-GSGRGRGR G--GGDGR-D RGGGGQRR-G VAKSKNRRRK BACU003696/1-212 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000054113/1-329 SVLTVSVEPH RHEGVFIYRG AEDALVTLNM VPGQSVYGER RVTVTEGGEK ENSP00000473383/1-334 GAMVVSVEPH RHEGVFIYRG AEDALVTLNM VPGQSVYGER RVTVTEGGVK ENSTTRP00000015312/1-335 GVTTVSVEPH RHEGVFIYRG AEDALVTLNM VPGQSVYGER RVTVTEGGVK bmy_01539T0/1-335 GVTTVSVEPH RHEGVFIYRG AEDALVTLNM VPGQSVYGER RVTVTEGGVK BACU003696/1-212 ---------- ---------- ---------M VPGQSVYGER RVTVTEGGVK 151 200 ENSBTAP00000054113/1-329 LEYRTWNPFR SKLAAAILGG VDQIHIKPKS KVLYLGAASG TTVSHVSDII ENSP00000473383/1-334 QEYRTWNPFR SKLAAAILGG VDQIHIKPKS KVLYLGAASG TTVSHVSDII ENSTTRP00000015312/1-335 QEYRTWNPFR FKLAAAILGG VDQIHIKPKS KVLYLGAASG TTVSHVSDII bmy_01539T0/1-335 QEYRTWNPFR SKLAAAILGG VDQIHIKPKS KVLYLGAASG TTVSHVSDII BACU003696/1-212 QEYRTWNPFR SKLAAAILGG VDQIHIKPKS KVLYLGAASG TTVSHVSDII 201 250 ENSBTAP00000054113/1-329 GPDGLVYAVE FSHRAGRDLV NVAKKRTNII PVLEDARHPL KYRMLIGMVD ENSP00000473383/1-334 GPDGLVYAVE FSHRAGRDLV NVAKKRTNII PVLEDARHPL KYRMLIGMVD ENSTTRP00000015312/1-335 GPDGLVYAVE FSHRAGRDLV NVAKKRTNII PVLEDARHPL KYRMLIGMVD bmy_01539T0/1-335 GPDGLVYAVE FSHRAGRDLV NVAKKRTNII PVLEDARHPL KYRMLIGMVD BACU003696/1-212 GPDGLVYAVE FSHRAGRDLV NVAKKRTNII PVLEDARHPL KYRMLIGMVD 251 300 ENSBTAP00000054113/1-329 VIFADVAQPD QSRIVALNAH TFLRNGGHFL ISIKANCIDS TASAEAVFAS ENSP00000473383/1-334 VIFADVAQPD QSRIVALNAH TFLRNGGHFL ISIKANCIDS TASAEAVFAS ENSTTRP00000015312/1-335 VIFADVAQPD QSRIVALNAH TFLRNGGHFL ISIKANCIDS TASAEAVFAS bmy_01539T0/1-335 VIFADVAQPD QSRIVALNAH TFLRNGGHFL ISIKANCIDS TASAEAVFAS BACU003696/1-212 VIFADVAQPD QSRIVALNAH TFLRNGGHFL ISIKANCIDS TASAEAVFAS 301 350 ENSBTAP00000054113/1-329 EVRKLQQENL KPQEQLTLEP YERDHAVVVG VYRPLPKSSS - ENSP00000473383/1-334 EVRKLQQENL KPQEQLTLEP YERDHAVVVG VYRPLPKSSS K ENSTTRP00000015312/1-335 EVRKLQQENL KPQEQLTLEP YERDHAVVVG VYRPLPKSAN - bmy_01539T0/1-335 EVRKLQQENL KPQEQLTLEP YERDHAVVVG VYRPLPKSAN K BACU003696/1-212 EVRKLQQENL KPQEQLTLEP YERDHAVVVG VYRPLPKSAN K