KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:32 2014 Check: 00 .. Name: ENSBTAP00000054115/1-424 Len: 500 Check: 603 Weight: 1.00 Name: ENSP00000335493/1-495 Len: 500 Check: 944 Weight: 1.00 Name: ENSTTRP00000000779/1-478 Len: 500 Check: 2791 Weight: 1.00 Name: bmy_12715T0/1-485 Len: 500 Check: 6699 Weight: 1.00 Name: BACU000293/1-346 Len: 500 Check: 7179 Weight: 1.00 // 1 50 ENSBTAP00000054115/1-424 MTLGSCCCEI MSSESSPAAL SEADADIDVV G--------- ---------- ENSP00000335493/1-495 MTLGSCCCEI MSSESSPAAL SEADADIDVV G--GGSGGGE LPARSGPRAP ENSTTRP00000000779/1-478 MTLGSCCCEI MSSESSPAAL SEADADIDVV GGGGGSGGGE PPARSG-RAL bmy_12715T0/1-485 MTLGSCCCEI MSSESSPAAL SEADADIDVV GGGGGSGGGE PPARSGPRAP BACU000293/1-346 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000054115/1-424 ---------- PPEEAAGEAV EDEEESGGCS DGEPRALAPR GAAAAAGSPG ENSP00000335493/1-495 RDVLPHGHEP PAEEAEADLA EDEEESGGCS DGEPRALASR GAAAAAGSPG ENSTTRP00000000779/1-478 RDLLPHGPEP PEAE---DVA DDEGESGGCS DXXXXXXXXR GAAAAR-SPG bmy_12715T0/1-485 RDLLPHGPEP PPEEAEGDAA EDEEESGGCS DGEPRALAPR GAAAAAGSPG BACU000293/1-346 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000054115/1-424 PVSAAARGAA GPGPGPPSGG AATRSPLVKP PYSYIALITM AILQSPKKRL ENSP00000335493/1-495 PGAAAARGAA GPGPGPPSGG AATRSPLVKP PYSYIALITM AILQSPKKRL ENSTTRP00000000779/1-478 SGTAAARGAA GPGPGPPSGG AATRSPLVKP PYSYIALITM AIVQSPKKRL bmy_12715T0/1-485 PGTAAARGAA GPGPGPPSGG AATRSPLVKP PYSYIALITM AILQSPKKRL BACU000293/1-346 ---------- ---------- ---------- ---------M AILQSPKKRL 151 200 ENSBTAP00000054115/1-424 TLSEICEFIS GRFPYYREKF PAWQNSIRHN LSLNDCFVKI PREPGNPGKG ENSP00000335493/1-495 TLSEICEFIS GRFPYYREKF PAWQNSIRHN LSLNDCFVKI PREPGNPGKG ENSTTRP00000000779/1-478 TLSEICEFIS GRFPYYREKF PAWQNSIRHN LSLNDCFVKI PREPGNPGKG bmy_12715T0/1-485 TLSEICEFIS GRFPYYREKF PAWQNSIRHN LSLNDCFVKI PREPGNPGKG BACU000293/1-346 TLSEICEFIS GRFPYYREKF PAWQNSIRHN LSLNDCFVKI PREPGNPGKG 201 250 ENSBTAP00000054115/1-424 NYWTLDPESA DMFDNGSFLR RRKRFKRQPL PPPHPHTHPH PELLLRGGAA ENSP00000335493/1-495 NYWTLDPESA DMFDNGSFLR RRKRFKRQPL PPPHPHPHPH PELLLRGGAA ENSTTRP00000000779/1-478 NYWTLDPESA DMFDNGSFLR RRKRFKRQPL PPPHPHTHPH PELLLRGGAA bmy_12715T0/1-485 NYWTLDPESA DMFDNGSFLR RRKRFKRQPL PPPHPHTHPH PELLLRGGAA BACU000293/1-346 NYWTLDPESA DMFDNGSFLR RRKRFKRQPL PPPHPHTHPH PELLLRGGAA 251 300 ENSBTAP00000054115/1-424 ARRLPAS--- -FAAYGAYGY GYGLG----- ---------- ---------- ENSP00000335493/1-495 AAGDPGAFLP GFAAYGAYGY GYGLALPAYG APPPGPAPHP HPHPHAFAFA ENSTTRP00000000779/1-478 AAGDAGAFLP GFAAYGAYGY GYGLALPAYG APPPGPAPHP HPHPHAFAF- bmy_12715T0/1-485 AAGDAGAFLP GFAAYGAYGY GYGLALPAYG APPPGPAPHP HPHPHAFAF- BACU000293/1-346 AAGDAGAFLP GFAAYGAYGY GYGLALPAYG APPPGPAPHP HPHPHAFAF- 301 350 ENSBTAP00000054115/1-424 --------SL SVPPGRAAAP PPGPPTASVF ASAASGPAPA PAPSAGSGPG ENSP00000335493/1-495 AAAAAAPCQL SVPPGRAAAP PPGPPTASVF AGAGSAPAPA PASGSGPGPG ENSTTRP00000000779/1-478 -AAAAAPCQL SVPPGRAAAP PPGPPTASVF AGAAS--APA PAPGTGSGPG bmy_12715T0/1-485 -AAAAAPCQL SVPPGRAAAP PPGPPTASVF AGAASAPAPA PAPGTGSGPG BACU000293/1-346 -AAAAAPCQL SVPPGRAAAP PPGPPTASVF AGAASAPAPA PAPGTGSGPG 351 400 ENSBTAP00000054115/1-424 PSGLPGFLGA ELGCAKAFYP ASLISLAAG- -----TALLR PGLKTDA--- ENSP00000335493/1-495 PAGLPAFLGA ELGCAKAFYA ASLSPPAAGT AAGLPTALLR QGLKTDAGGG ENSTTRP00000000779/1-478 PSGLPAFLGA ELGCAKAFYP ASLSPPAAG- -----TALLR QGLKTDA--- bmy_12715T0/1-485 PSGLPAFLGA ELGCAKAFYP ASLSPPAAG- -----TALLR QGLKTDA--- BACU000293/1-346 PSGLPAFLGA ELGCAKAFYP ASLSPPAAG- -----TALLR QGLKTDA--- 401 450 ENSBTAP00000054115/1-424 -GGGGAGAGQ RPSFSIDHIM GHGGGGAAPP GAGEGSPGSP FSAARRAAGP ENSP00000335493/1-495 AGGGGAGAGQ RPSFSIDHIM GHGGGGAAPP GAGEGSPGPP FAA---AAGP ENSTTRP00000000779/1-478 -GGGGAGAGQ RPSFSIDHIM GHGGGGAVPP GGGEGSPGSP FSA---AAGP bmy_12715T0/1-485 -GGGGAGAGQ RPSFSIDHIM GHGGGGAVPP GGGEGSPGSP FSA---AAGP BACU000293/1-346 -GGGGAGAGQ RPSFSIDHIM GHGGGGAVPP GGGEGSPGSP FSA---AAGP 451 500 ENSBTAP00000054115/1-424 GGQAQVLAML TAPALAPVAG HVRLSHHGDD LLSSGPSFAG KVAGLSGCHF ENSP00000335493/1-495 GGQAQVLAML TAPALAPVAG HIRLSHPGDA LLSSGSRFAS KVAGLSGCHF ENSTTRP00000000779/1-478 GGQAQVLAML TTPALAPVAG HIRLSHHGDA LLSSGPSFAG KVAGLSGCHF bmy_12715T0/1-485 GGQAQVLAML TTPALAPVAG HIRLSHHGDA LLSSGPPFAG KVAGLSGCHF BACU000293/1-346 GGQAQVLAML TTPALAPVAG HIRLSHHGDA LLSSGPPFAG KVAGLSGCHF