KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 18:23:33 2014  Check: 00 ..

 Name: ENSP00000328397/1-202     Len:    202  Check:  3218  Weight:  1.00
 Name: ENSBTAP00000054126/1-199  Len:    202  Check:  5642  Weight:  1.00
 Name: ENSTTRP00000000527/1-199  Len:    202  Check:  5697  Weight:  1.00
 Name: bmy_08651T0/1-171         Len:    202  Check:  4850  Weight:  1.00
 Name: BACU001282/1-195          Len:    202  Check:  9851  Weight:  1.00

//


                          1                                                   50
ENSP00000328397/1-202     MERGAGAKLL PLLLLLRATG FTCAQTDGRN GYTAVIEVTS GGPWGDWAWP 
ENSBTAP00000054126/1-199  MELGAGAKLP LPLLLLQATC LGYAGADS-- -YMSVIEVTN GGPWGDWAWP 
ENSTTRP00000000527/1-199  MERGAGAKL- --LLLLWATC FGRARADASS GYTLVIEVTN GGAWGDWAWP 
bmy_08651T0/1-171         MERGAGAKL- --LLLLWATC FGHARADALS GYTLVIEVEP ---------- 
BACU001282/1-195          MEQGAGAKL- --LLLLWATC FGRARADALS GYTLVIEVTN GGPWGDWAWP 


                          51                                                 100
ENSP00000328397/1-202     EMCPDGFFAS GFSLKVEPPQ GIPGDDTALN GIRLHCARGN VLGNTHVVES 
ENSBTAP00000054126/1-199  EMCPDGFFAS GFSLKVEPPQ GIPGDDTALN GIRLHCARGQ ADLNAHVVES 
ENSTTRP00000000527/1-199  EMCPDRFFAS GFSLKMEPPQ GITGDDTALN GIRLHCARGN AELNTHVVES 
bmy_08651T0/1-171         ---PQGI--- --------P- ---GDDTALN GSRLHCARGN AELNTHVVES 
BACU001282/1-195          EMCPDGFFAS GFSLKVEPP- ---XDDTALN GIRLHCARGN AELNTHVVES 


                          101                                                150
ENSP00000328397/1-202     QSGSWGEWSE PLWCRGGAYL VAFSLRVEAP TTLGDNTAAN NVRFRCSDGE 
ENSBTAP00000054126/1-199  QSGRWGWWSE PLWCPVGGFL VAFSLRVEAP VTFGDNTAAN NVRFLCSDGT 
ENSTTRP00000000527/1-199  QSGRWGAWSE PLWCPGGGFL VAFSLRVEAP VTPGDNTAAN NVRFRCSDST 
bmy_08651T0/1-171         QSGRWGAWSE PLWCPGSGFL VAFSLRVEAP VTPGDNTAAN NVRFRCSDST 
BACU001282/1-195          QSGRWGAWSE PLWCPGSGFL VAFSLRVEAP VTPGDNTAAN NVRFRCSDST 


                          151                                                200
ENSP00000328397/1-202     ELQGPGLSWG DFGDWSDHCP KGACGLQTKI QGPRGLGDDT ALNDARLFCC 
ENSBTAP00000054126/1-199  ELQGPGLTWG DFGNWSELCP KGICGLQTKI QQPQGLLDDT AINDALFFCC 
ENSTTRP00000000527/1-199  ELQGPGLFWG DFGNWSEPCP KGVCGLQTKI ERPGGLRDDT AVNDARFFCC 
bmy_08651T0/1-171         ELQGPGLSWG DFGDWSEPCP KGVCGLQTKI EQPRGLRDDT AVNDARFFCC 
BACU001282/1-195          VLQGPGLSWG DFGDWSEPCP KGVCGLQTKI EQPRGLRDDT AVNDTRFFCC 


                          201                                                250
ENSP00000328397/1-202     RS 
ENSBTAP00000054126/1-199  RN 
ENSTTRP00000000527/1-199  RS 
bmy_08651T0/1-171         RS 
BACU001282/1-195          RS