KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:33 2014 Check: 00 .. Name: ENSP00000367462/1-318 Len: 325 Check: 4599 Weight: 1.00 Name: ENSBTAP00000054135/1-262 Len: 325 Check: 4379 Weight: 1.00 Name: ENSTTRP00000004156/1-207 Len: 325 Check: 8311 Weight: 1.00 Name: bmy_16411T0/1-225 Len: 325 Check: 3638 Weight: 1.00 Name: BACU018896/1-208 Len: 325 Check: 2064 Weight: 1.00 // 1 50 ENSP00000367462/1-318 MERGDQPKRT RNENIFNCLY KNPEATFKLI CFPWMGGGST HFAKWGQDTH ENSBTAP00000054135/1-262 QDRFNHDSRV ENEKVVNCLY QNRNALFRLV CFPWGGGDST YFAKWGQDIP ENSTTRP00000004156/1-207 ---------- ---------- ---------- ---------- ---------- bmy_16411T0/1-225 ---------- -NDKVVNCLY QNRNSPFRLV CFPWAGGGSN YFAKWGQDIP BACU018896/1-208 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000367462/1-318 DLLEETASHH VAKAGLKLRR SSDPPASAYP CAGVSHRRRE PPCLAKILGL ENSBTAP00000054135/1-262 NSVE------ ---------- ---------- ---------- ---------- ENSTTRP00000004156/1-207 ---------- ---------- ---------- ---------- ---------- bmy_16411T0/1-225 NSME------ ---------- ---------- ---------- ---------- BACU018896/1-208 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000367462/1-318 FWILIFFMHS LRLPGRESRV EEPLENDISQ LVDEVVCALQ PVIQDKPFAF ENSBTAP00000054135/1-262 -------VHA IRLAGRESRL EEPFASDMNQ IVDEIACALL PIIQGEYFAF ENSTTRP00000004156/1-207 --------HA IRLAGRESWL EDPFPSDIYQ MVDEIACALL PVLQGKNFAF bmy_16411T0/1-225 -------GHA IRLAGRESQL EDPFPSDIYQ MVDEIACALL PVLQGENFAF BACU018896/1-208 --------HA IRLAGRESRL EDPFPSDIYQ MVDEIACALL LVLQGENFAF 151 200 ENSP00000367462/1-318 FGHSMGSYIA FRTALGLKEN NQPEPLHLFL SSATPVHSKA WHRIPK-DDE ENSBTAP00000054135/1-262 FGHSMGSFTA FFTALHLKEK YNLEPVHLFV SSLSPPHSKA --RIHLHKDD ENSTTRP00000004156/1-207 FGHSIGSYVT FMPVLHLKEK YKLEPVHLFV SGI-APHSKA --RLCF-SED bmy_16411T0/1-225 FGHSIGSYVT FMTVLXLKEK YKLEPVHLFV SGISAPHSKA --RLCF-SED BACU018896/1-208 FGHSMGSYVT FMTVLHLKEK YKPEPVHLCV SGISAPHSKA --RLCF-SED 201 250 ENSP00000367462/1-318 LSEEQISHYL MEFGGTPKHF -AEAKEFVKQ CSPIIRADLN IVRSCTSNVP ENSBTAP00000054135/1-262 LCKEEIFYVM KKVGGIPDKF LLNSQEVSKE TSPRLK--IK VIHNCSSDIP ENSTTRP00000004156/1-207 LSEEQITCLL KDLGGTPVDF -VDDKAFYQP -FPKLVTDSP IVSNSIFDTP bmy_16411T0/1-225 LSEEQITCLL KDLGGTPADF -VDDKAFLQQ -FPKLVTDSR IV-------- BACU018896/1-208 LSEEQITCLL KDLVGIPADF -VDDQAFLQQ -FPKLVTDSR IVSNYIFDTP 251 300 ENSP00000367462/1-318 SKAVLSCDLT CFVGSEDIAK DMEAWKDVTS GNAKIYQLPG GHFYLLDPAN ENSBTAP00000054135/1-262 SKTRLSCDIT CFSGSEDIPL DMEAWKDVTS GSFDSFVLPG NHFYLMEPSN ENSTTRP00000004156/1-207 SEAVLSCDST CITVSEDTPA DLEAWEDVTS GSFDIRALPG CHFYLLEPSN bmy_16411T0/1-225 ---------- ---------- ---TWEDVTS GSFDIRVLPG HHFYHLEPSN BACU018896/1-208 SEAVLSCDST CFTGSEDIRV DLEAWEDVTS GSFDIRVLPG RHFYLLEPSN 301 350 ENSP00000367462/1-318 EKLIKNYIIK CLEVSSISNF ----- ENSBTAP00000054135/1-262 TSFIKKYITK TLEISAFTS- ----- ENSTTRP00000004156/1-207 EIFIKSYITK SLEVSMLHCC W---- bmy_16411T0/1-225 EIFIKNYITK SLEVSMLHCC WIFSL BACU018896/1-208 EIFIKNYITR SLEVSMLHCC W----