KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:35 2014 Check: 00 .. Name: ENSP00000331167/1-634 Len: 780 Check: 5424 Weight: 1.00 Name: ENSBTAP00000054154/1-662 Len: 780 Check: 711 Weight: 1.00 Name: ENSTTRP00000010553/1-634 Len: 780 Check: 9446 Weight: 1.00 Name: bmy_04976T0/1-398 Len: 780 Check: 2245 Weight: 1.00 Name: BACU003635/1-669 Len: 780 Check: 5966 Weight: 1.00 // 1 50 ENSP00000331167/1-634 MRWLRPAGRR REQES----- ------VSGH LGPPAGAPAA PETPTCLPDT ENSBTAP00000054154/1-662 -MAPKSCQEA EDAEEEALAS LVDREPVSGH MGPPVGAAAD PVASTHPQNA ENSTTRP00000010553/1-634 --ASQTAGRR RDRD------ ------VSGH VG-PASASPD RGAPACPQDT bmy_04976T0/1-398 -MAPESCQEA EDAEEEAFPS LVDRELFSGH VGPPASTSAD PGAPACPQDT BACU003635/1-669 -MAPESCQEA ADAEEEAFPS LVHRELVSGH VGPPASASAD PGAPACPQDT 51 100 ENSP00000331167/1-634 TPHPAPVVCS ADPQLALESL DPRTLRLLWR QRELEIQALR WAIQNGEDAR ENSBTAP00000054154/1-662 KPSSTRMVSS INLQSALESL DPRTLRLLWG QRELEIQALR WAIQNQREAR ENSTTRP00000010553/1-634 KPSSTRMVSS VNPQSAPESL DPRTLRLLWR QRELEIQALR WAIENHREAR bmy_04976T0/1-398 KPSSTRMVSS VSPQSAPESL DPRTLRLLWR QRELEIQALR WAIENHREAR BACU003635/1-669 KPSSTRMVSS VSPQSAPESL DPRTLRLLWR QRELEIQALR WAIENHREAR 101 150 ENSP00000331167/1-634 LCHILEEVAG LPPK------ ---------- ---------- ---------- ENSBTAP00000054154/1-662 HCRILQEVAG LPAE------ ---------- ---------- ---------- ENSTTRP00000010553/1-634 HCRILQEVAG LPAE------ ---------- ---------- ---------- bmy_04976T0/1-398 HCRILQEVAG LPAE------ ---------- ---------- ---------- BACU003635/1-669 HCRILQEVAG LPAERSAAYC WSPACPVSVP TLTPSLCLTP KSTAKTAALT 151 200 ENSP00000331167/1-634 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054154/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010553/1-634 ---------- ---------- ---------- ---------- ---------- bmy_04976T0/1-398 ---------- ---------- -------SEE EPLLLSMAAD PEVGAAEIAL BACU003635/1-669 LALTFASSFS PYLALIPHPS PEEAPNDSEE EPLLLSLAAD PEVGAAEIAL 201 250 ENSP00000331167/1-634 --RSSHSQEK LLQNQVQKLI QELKEQKERA QWEKEHLEER LLQTTRTLQE ENSBTAP00000054154/1-662 --RSSRSKDK FLQNQVQKLT LELKAQKEKA QLEKKRLEER LQQAEDALRQ ENSTTRP00000010553/1-634 --RSSCSR-K LLQNQVQKLT LELEEQKGQA QLEKAHLEER LLQTRNTLRQ bmy_04976T0/1-398 SPRSSRSR-K FLQNQVQRLT LELEGQKEQA QLEKAHLEER LLQTGNTLRQ BACU003635/1-669 SPRSSRSR-K FLQNQVQKLT LELEEHKEQA QLEKAHLEER LLQTGNTLRQ 251 300 ENSP00000331167/1-634 MEAELQNLQK SCLLQLARSS WVGRMLRSQT GSVEVVTAET LMDPSDLSEN ENSBTAP00000054154/1-662 LEAELQAFQK SCLLQLARSS WVGRVLRSST GSVEVVTAET LMDLSDFSEN ENSTTRP00000010553/1-634 LEAELQALQK SCLLQLARSS WVGRTLRSST GSVEVVTAET LVDPGDLSEN bmy_04976T0/1-398 LEAELQAFQR SCLLQLARSS WVGRMLRSST GSVEVVTAET LMDPSDLSEN BACU003635/1-669 LEAELQALQK SCLLQLARSS WVGRMLRSSM GSVEVVTAET LMDPSDLSEN 301 350 ENSP00000331167/1-634 IQAPT-GEGF RLEDVDWNSV ARRYPNLFTN MEPSSKQKQP RPWPQLDTG- ENSBTAP00000054154/1-662 DQAPTAGEGF RLEDVDWNSI AHRYPNLFTN LESSSDQNEH TPGVNAAYT- ENSTTRP00000010553/1-634 DRPPTAGEGF RLENVDWNSV AHRYPNLFTN LESSSDQQHP WAPPLPDAG- bmy_04976T0/1-398 DRSPTAGEGF RLEDVDWNSI AHRYPSLFTD LESSSDQKHP RAPPLPELPP BACU003635/1-669 DRSPTAGEGF RLEDVDWNSI AHRYPNLFTD LESSLDQN-- ---------- 351 400 ENSP00000331167/1-634 -------SPE SSGKHSERHH KTVEWGSLPC LNTSSSGGAD SDSSSCRPGL ENSBTAP00000054154/1-662 ------RRTE AATTHQEHNL KSVEWSSLPL AGTSSSGGAD SESSNSQLAA ENSTTRP00000010553/1-634 --------NS LYCRQSEHRL KSVEWSSLPL VGTSSSGGAD SESSSCLLAA bmy_04976T0/1-398 ATQPDQWNSE PYCWQREHRL KSVEWSSLPL AGASSSGGAD SESSSCLLAA BACU003635/1-669 ---------- ---------- ---------- ----SSGGAD SESSSCLLAA 401 450 ENSP00000331167/1-634 PSFVQ-VIGH PPRDHRASSE QALVQAGSYS RDSE------ ---DLQKTHS ENSBTAP00000054154/1-662 HNRVHKVTGD PPQVPSHTAK QVEARAQSLC RDSAGAHY-- ---------- ENSTTRP00000010553/1-634 RYHVQKVTRD PLQ-RQATSE QNG--AQSLC WDSRATWE-- ---DLRKTHS bmy_04976T0/1-398 RYHVQKVTGD PLQAPGHTAE QMGAQAQSLS GDSRATWE-- ---------- BACU003635/1-669 RYHVQKVTGD PLQAPGHTAE QREAQAQSLC GDSRAAWAGR LSLDLRKTHS 451 500 ENSP00000331167/1-634 PRHGEPVLSP QPCTDPDHWS PELLQSPTG- -LKIVAVSCR EKFVRIFNPS ENSBTAP00000054154/1-662 --PSCSDLIP SAAPLPHGPS GHCGPSPSGS CLKIMAVSRR QRFVRILNQS ENSTTRP00000010553/1-634 DRQGKNGQEP ESRADPHPRH YGRCPSPTGS CLKIMAVSHR RGFVRILNQS bmy_04976T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU003635/1-669 DRQGSNGQEA ESCADPHPRH SGRCPSPAGS CLKIVAVSRR RRFVRILNHS 501 550 ENSP00000331167/1-634 QESTADLSGM VLKQLVRGFP ERLYRFPPGT LLAPRHHVTV WGEATRSAKK ENSBTAP00000054154/1-662 LEETVDLGGF VLQQLVLDFP VCMYRFPPST LLPPRHHITV WGEGPCSTRR ENSTTRP00000010553/1-634 LEETADLGGF VLQQLVRDFP VCMYRFPPST LLEPRQHITV WGEAPSSTKR bmy_04976T0/1-398 -------GGV ---------- ---------- ---------- ---------- BACU003635/1-669 LEETADLGGF VLQQL----- ---------- ---------V WGEAPGSTKR 551 600 ENSP00000331167/1-634 PLRASSSREP VPLLSIRGCA TLLLSPKGEV LSEHRIPRRE TPAPRVFADG ENSBTAP00000054154/1-662 QQLSSLGREP VHFYSSRSCV TLLLNPQGEV LSEHQSPHCV TPVSRIFADN ENSTTRP00000010553/1-634 QPPFSLGQEP VHFHSSRGCV TLLLNPQGEV LSEHQAAHCV TPVCRIFADN bmy_04976T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU003635/1-669 QPPSSLGQEP VHFHSSRGCV TLLLNPQGEV LSEHQAAHCV TPVCRIFSDN 601 650 ENSP00000331167/1-634 TDLSIDRFPL PEAGPGADTR KPPRPPRPLR KGRVREPRVS RRRPGT---- ENSBTAP00000054154/1-662 TDLSIDCFPL SEARPEADLA EHQPQPRPPR KGRVREARAG RRRPGWGPRV ENSTTRP00000010553/1-634 TDLSIDRFPL SEARPGADLA ERQPLPRPPR KGRVQEARAG RRRPGT---- bmy_04976T0/1-398 ---------- ---------- ---------- -GRVS----- ---PGF---- BACU003635/1-669 TDLSIDRFPL SEARPGADLA EQQPLPRLPR KGRVQEARAG RRRPGT---- 651 700 ENSP00000331167/1-634 ---------- ---------- -RGLLPPVSS GKLFHAREGP ARPENPEIPA ENSBTAP00000054154/1-662 LQWSSTSPGR VCPGTTPSRW PRVQLPRLST IKLLRQREAP VWPEDVAQTH ENSTTRP00000010553/1-634 ---------- ---------- -RVQLPRLST RKLLRQREVP GRPEGAAETH bmy_04976T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU003635/1-669 ---------- ---------- -RVQLPRLST SKLLRQREVP ARPEGAAERH 701 750 ENSP00000331167/1-634 PQHLPAIPGD PTLPSPPAEA GLGLEDCRLQ KEHRVRVCRK SVDRSCPLVA ENSBTAP00000054154/1-662 PELLPSIPI- PA------EV GVGLQDCQGR KDHKIRVCRK RVDCGCPMVA ENSTTRP00000010553/1-634 PELLPASPAD PTPSLSRAEA ALGLEDCQAR KEHKVRVGRK SVDRGCPMVA bmy_04976T0/1-398 ------SPL- PAP------- ----QDCDL- ---------- -----CPKS- BACU003635/1-669 PELLPASPI- PIP-----EA GLGLEDCQAR KELKVR---- ---RGCPMVA 751 800 ENSP00000331167/1-634 LSVQNTAESR FGFRFLSCLP VTADTCRGA- ENSBTAP00000054154/1-662 LSVQSTAESR FGFRFLSCPP ITVDTRWPL- ENSTTRP00000010553/1-634 LSVQSTAESR FGFRFLSCPP ITADSRCGVG bmy_04976T0/1-398 ---------- ---------- ---------- BACU003635/1-669 LSVQSTAESR FGFRFLSCPP ITADSRWPV-