KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:37 2014 Check: 00 .. Name: ENSP00000253188/1-523 Len: 530 Check: 5854 Weight: 1.00 Name: ENSBTAP00000054168/1-529 Len: 530 Check: 105 Weight: 1.00 Name: ENSTTRP00000011596/1-524 Len: 530 Check: 5501 Weight: 1.00 Name: bmy_14599T0/1-524 Len: 530 Check: 5877 Weight: 1.00 Name: BACU019921/1-474 Len: 530 Check: 8655 Weight: 1.00 // 1 50 ENSP00000253188/1-523 ------MAGH TQQPSGRGNP RPAPSPSPVP GTVPGASERV ALKKEIGLLS ENSBTAP00000054168/1-529 MGKGLRLASH SQQPSGRGNP GPAPSPSPGR GPGPGASERV ALKKEIGLVS ENSTTRP00000011596/1-524 ------MAGH TQQPSGRGNP GPAPSPSPGP GPGPGASERV ALKKEIGLVS bmy_14599T0/1-524 ------MAGH TQQPSGRGNP GPAPSPSPGP GPGPGASERV ALKKEIGLVS BACU019921/1-474 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000253188/1-523 ACTIIIGNII GSGIFISPKG VLEHSGSVGL ALFVWVLGGG VTALGSLCYA ENSBTAP00000054168/1-529 ACTIIIGNII GSGIFISPKG VLEHSGSVGL ALFVWVLGGG ITALGSLCYA ENSTTRP00000011596/1-524 ACTIIIGNII GSGIFISPKG VLEHCGSVGL ALFVWVLGGG ITALGSLCYA bmy_14599T0/1-524 ACTIIIGNII GSGIFISPKG VLEHCGSVGL ALFVWVLGGG ITALGSLCYA BACU019921/1-474 ------GNII GSGIFISPKG VLEHCGSVGL ALFVWVLGGG ITALGSLCYA 101 150 ENSP00000253188/1-523 ELGVAIPKSG GDYAYVTEIF GGLAGFLLLW SAVLIMYPTS LAVISMTFSN ENSBTAP00000054168/1-529 ELGVAIPKSG GDYAYVTEIF GGLAGFLLLW SAVLIMYPTS LAVISMTFSN ENSTTRP00000011596/1-524 ELGVAIPRSG GDYAYVTEIF GGLAGFLLLW SAVLIMYPTS LAVISMTFSN bmy_14599T0/1-524 ELGVAIPKSG GDYAYVTEIF GGLAGFLLLW SAVLIMYPTS LAVISMTFSN BACU019921/1-474 ELGVAIPKSG GDYAYVTEIF GGLAGFLLLW SAVLIMYPTS LAVISMTFSN 151 200 ENSP00000253188/1-523 YVLQPVFPNC IPPTTASRVL SMACLMLLTW VNSSSVRWAT RIQDMFTGGK ENSBTAP00000054168/1-529 YVLQPVFPNC IPPAAASRVL SMACLMLLTW VNSSSVRWAT RIQDVFTGGK ENSTTRP00000011596/1-524 YVLQPVFPNC IPPAAASRAL SMACLMLLTW VNSSSVRWAT RIQDVFTGGK bmy_14599T0/1-524 YVLQPVFPNC IPPAAASRAL SMACLMLLTW VNSSSVRWAT RIQGVFTGGK BACU019921/1-474 YVLQPVFPNC IPPAAASRAL SMACLMLLTW VNSSSVRWAT RIQDVFTGGK 201 250 ENSP00000253188/1-523 LLALSLIIGV GLLQIFQGHF EELRPSNAFA FWMTPSVGHL ALAFLQGSFA ENSBTAP00000054168/1-529 LLALSLIIGV GFVQIFQGHF EELRPSNAFD FWMTPSVGHL ALAFLQGSFA ENSTTRP00000011596/1-524 LLALSLIIGV GFVQIFQGHF EELRPSNAFD FWMTPSVGHL ALAFLQGSFA bmy_14599T0/1-524 LLALSLIIGV GFVQIFQGHF EELRPSNAFD FWMTPSVGHL ALAFLQGSFA BACU019921/1-474 LLALSLIIGV GFVQIFQGHF EELRPSNAFD FWMTPSVGHL ALAFLQGSFA 251 300 ENSP00000253188/1-523 FSGWNFLNYV TEEMVDARKN LPRAIFISIP LVTFVYTFTN IAYFTAMSPQ ENSBTAP00000054168/1-529 FSGWNFLNYV TEELVDPRKN LPRAIFISIP LVTFVYTFTN VAYFTAMSPQ ENSTTRP00000011596/1-524 FSGWNFLNYV TEELVDPRKN LPRAIFISIP LVTFVYTFTN VAYFTAMSPQ bmy_14599T0/1-524 FSGWNFLNYV TEELVDPRKN LPRAIFISIP LVTFVYTFTN VAYFTAMSPQ BACU019921/1-474 FSGWNFLNYV TEELVDPRKN LPRAIFISIP LVTFVYTFTN VAYFTAMSPQ 301 350 ENSP00000253188/1-523 ELLSSNAVAV TFGEKLLGYF SWVMPVSVAL STFGGINGYL FTYSRLCFSG ENSBTAP00000054168/1-529 ELLASNAVAV TFGEKLLGYF SWVMPVSVAL STFGGINGYL FTSSRLCFSG ENSTTRP00000011596/1-524 ELLASNAVAV TFGEKLLGYF SWVMPVSVAL STFGGINGYL FTSSRLCFSG bmy_14599T0/1-524 ELLASNAVAV TFGEKLLGYF SWVMPVSVAL STFGGINGYL FTSSRLCFSG BACU019921/1-474 ELLASNAVAV TFGEKLLGYF AWVMPVSVAL STFGGINGYL FTSSRLCFSG 351 400 ENSP00000253188/1-523 AREGHLPSLL AMIHVRHCTP IPALLVCCGA TAVIMLVGDT YTLINYVSFI ENSBTAP00000054168/1-529 AREGHLPSLL AMIHVRRCTP IPALLVCCGA TAVIMLVGDT YTLINYVSFI ENSTTRP00000011596/1-524 AREGHLPSLL AMIHVRHCTP IPALLVCGGA TAVILLVGDT YTLINYVSFI bmy_14599T0/1-524 AREGHLPSLL AMIHVRHCTP IPALLVCGGA TAVIMLVGDT YTLINYVSFI BACU019921/1-474 AREGHLPSLL AMIHVRHCTP IPALLVCGGA TAVIMLVGDT YTLINYVSFI 401 450 ENSP00000253188/1-523 NYLCYGVTIL GLLLLRWRRP ALHRPIKVNL LIPVAYLVFW AFLLVFSFIS ENSBTAP00000054168/1-529 NYLCYGVTIL GLLVLRWRRP ALHRPIKVNL LVPVAYLVFW AFLLVFSFIS ENSTTRP00000011596/1-524 NYLCYGVTVL GLLVLRWRWP ALHRPIKVNF LVPVAYLVFW AFLLVFSFIS bmy_14599T0/1-524 NYLCYGVTIL GLLVLRWRWP ALHRPIKVNL LVPIAYLVFW AFLLVFSFIS BACU019921/1-474 NYLCYGVTIL GLLVLRWRWP ALHRPIKVNL LVPIAYLVFW AFLLVFSFVS 451 500 ENSP00000253188/1-523 EPMVCGVGVI IILTGVPIFF LGVFWRSKPK CVHRLTESMT HWGQELCFVV ENSBTAP00000054168/1-529 EPMVCGVGVI IILTGVPIFF LGAFWRSKPK CVHRLTESVT RWGQELCFVV ENSTTRP00000011596/1-524 EPMVCGVGVI IILTGVPIFF LGVFWRSKPK CVHRLTESMT RWGQELCFVV bmy_14599T0/1-524 EPMVCGVGVI IILTGVPIFF LGVFWRSKPK CVHRLTESMT RWGQELCFVV BACU019921/1-474 EPMVCGVGVI IILTGVPIFF LGVFWRSKPK CVHRLTESMT RWGQELCFVV 501 550 ENSP00000253188/1-523 YPQDAPEEEE NGPCPPSLLP -ATDKPSKPQ ENSBTAP00000054168/1-529 YPQGSPEEEE NGPCQPSPLP -ATDKPLKTQ ENSTTRP00000011596/1-524 YPQGSPEEEE NGPCQPSPLP AATDKPLKTQ bmy_14599T0/1-524 YPQGSPEEEE NGPSQPSPLP TATDKPLKTQ BACU019921/1-474 YPQGSPEEEE NGPCQPSPLP AATDKPLKTQ