KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:38 2014 Check: 00 .. Name: ENSP00000363259/1-1435 Len: 1446 Check: 2019 Weight: 1.00 Name: ENSBTAP00000054184/1-1435 Len: 1446 Check: 2555 Weight: 1.00 Name: ENSTTRP00000014112/1-1379 Len: 1446 Check: 4299 Weight: 1.00 Name: bmy_04273T0/1-1431 Len: 1446 Check: 7555 Weight: 1.00 Name: BACU007606/1-1431 Len: 1446 Check: 7522 Weight: 1.00 // 1 50 ENSP00000363259/1-1435 MMQGNKKCTD AFSDSSSIGS VLDDADREVS SLTDRAFRSL CISEDTSFHD ENSBTAP00000054184/1-1435 TMQGSKKCMD GFSDSSSIGS VLDDADKEVS SLTDRAFRSL CISEDASFHD ENSTTRP00000014112/1-1379 RMQGSKKCTD GFSDSSSIGS VLDDADREVS SLTDRAFRSL CISEDASFHD bmy_04273T0/1-1431 -MQGSKKCMD GFSDSSSIGS VPDDADREVS SLTDRAFRSL CISEDASFHD BACU007606/1-1431 -MQGSKKCTD GFSDSSSIGS VLDDADREVS SLTDRAFRSL CISEDASFHD 51 100 ENSP00000363259/1-1435 SYLAVSPDIT RQVFGTFHQR TVGHTQRKSG IWSQLPSQGT EHSGWAATFQ ENSBTAP00000054184/1-1435 SDLALSPDIT RQVFGNFHQG TVSHTHRKSG IWSQLPSQGT EHAGWAATFQ ENSTTRP00000014112/1-1379 SDLALSPDIT RQVFGNFHQR TVSHTHRKSG IWSQLPSQGT EHAGWAATFQ bmy_04273T0/1-1431 SDLALSPDIT RQVFGNFHQR TVSHTHRKSG IWSQLPSQGT EHAGWAATFQ BACU007606/1-1431 TDLALSPDIT RQVFGNFHQR TVSHTHRKSG IWSQLPSQGT EHAGWAATFQ 101 150 ENSP00000363259/1-1435 QLPKYVQGEE KYPKTSPPPT PVQRRLEVPV SGLRSSNKPV SKVSTLIKSF ENSBTAP00000054184/1-1435 QLPKYVQGEE KYPKSSSPLT PAQRRLEVPV SGLRSSNKPI SKVSSLIKSF ENSTTRP00000014112/1-1379 QLPKYVQGEE KYPKSSPPLT PAQRRLEVPV SGLRSSNKPV SKVSSLIKSF bmy_04273T0/1-1431 QLPKYVQGEE KYPKSSPPLT PAQRRLEVPV SGLRSSNKPV SKVSSLIKSF BACU007606/1-1431 QLPKYVQGEE KYPKSSPPLT PAQRRLEVPV SGLRSSNKPV SKVSSLIKSF 151 200 ENSP00000363259/1-1435 DRTESQRCES RPTASKPPAL KNPPKFAPLP ENSVNFCFDS AFLTVRRVPA ENSBTAP00000054184/1-1435 DRTESQRCDS GPPTSKPPAL KNPPKFAPLP ESGVNFCFDS AFLTVRRVPA ENSTTRP00000014112/1-1379 DRTESQRCDS RPPTSKPPAL KNPPKFAPLP ESGVNFCFDS AVLTVRRVPA bmy_04273T0/1-1431 DRTESQRCDS RPPTSKPPAL KNPPKFAPLP ESGVNFCFDS AFLTVRRVPA BACU007606/1-1431 DRTESQRCDS RPPTSKPPAL KNPPKFAPLP ESSVNFCFDS AFLTVRRVPA 201 250 ENSP00000363259/1-1435 EVSNTHQNSY QPGRKHGEQE SSKNPEMACH GSSSFLPAAN DTATLCESKF ENSBTAP00000054184/1-1435 EVSSTHQASH QPGRKHGEQE APKNPEMASH GPNSFLPTSE HAANSFEPKF ENSTTRP00000014112/1-1379 EVSSTHKTSH QPGRKHGQQE SPKNPEVACH GPNSFLPTPE NAANSFESKF bmy_04273T0/1-1431 EVSSTHKTSH QPGRKHGEQE SPKNPEMACH GPNSFLPTPE NAANSFESKF BACU007606/1-1431 EVSSTHKTSH QPGRKHGEQE SPKNPEMACH GPNSFLPTPE NAANSFESKF 251 300 ENSP00000363259/1-1435 PSPHHKPVTG EPGRG----- KGTFLHSENS AFESWNAHQP KLLERKDTAG ENSBTAP00000054184/1-1435 PSPAHKAATS EPGRGQEWAR KGTFLHSENS AFESWNAHQP RLPERKDAAD ENSTTRP00000014112/1-1379 PSPAHRAATS ETGRGQEWAR KGTFLHSENS AFESWNAHQP RLPERKDAAD bmy_04273T0/1-1431 PSPAHKAATS ETGRGQEWAC KGTFLHSENS AFESWNAHQP RLPERKDAAD BACU007606/1-1431 PSPAHNAATS ETGRGQEWAR KGTFLHSENS AFESWNAHQP RLPERKDAAD 301 350 ENSP00000363259/1-1435 TVPESKAPKH YGDTTLLREP CPPERTVSPC QVQASCSQEE NRLAAGALST ENSBTAP00000054184/1-1435 AVPESKALKR YEDTPLLREP PASEQKTSPC HVRANCSQEE NKMAAGTLST ENSTTRP00000014112/1-1379 TVTESKAPKR YEDTPLLREP PASEHKASPC HLRAGCGQEE NRLAAGTHST bmy_04273T0/1-1431 TVAESKAPKH YEDTPLLREP PASEHKASPC HIRAGCGQEE NRLAAGTLST BACU007606/1-1431 TVAESKAPKH YEDSPLLREP PASEHKASPC HIRAGCGQEE NRLAAGTLST 351 400 ENSP00000363259/1-1435 SIPWGCRDPG AQVFAVEGKA PSSQPD-SQE KPAQPPWRKP KTGKKGKESL ENSBTAP00000054184/1-1435 SGTWVSRDLG AQIFAMEEKA SSSQADPPPL KPTHAPWRKP KPGKGGKDNL ENSTTRP00000014112/1-1379 SGTWGSRDLG AQGFATEGKA SSSQPE-PPL KPTHAPWRKP KSGKGGKESL bmy_04273T0/1-1431 SGTWGSRDLG AQVFATEGKA SSSQPE-PPL KPTHAPWRKP KSGKGGKESL BACU007606/1-1431 SGTWGSRDLG AQVSATEGKA SSSQPE-PPL KPTHAPWRKP KSGKGGKESL 401 450 ENSP00000363259/1-1435 QDTLEEKTQT NQRGPPLYTK HNPQEQFSEN NALDLPVEPN EHYDPPFNIS ENSBTAP00000054184/1-1435 QDASEEKKQT NWRGPALYTK HNPQVQFPEK DALDMPVEPH EHYDPPFNIS ENSTTRP00000014112/1-1379 QDASEEKQQT SWRGPALYTK HNPQGQFPEK DALDTPVDPH EHYDPPFNIS bmy_04273T0/1-1431 QDASEEKKQT NWRGPALYAK HNPQGQFPEK DALDMPVDPH EHYDPPFNIS BACU007606/1-1431 QDASEEKKQT NWRGPALYAK HNPQGQFPEK DALDMPVDPH EHYDPPFNIS 451 500 ENSP00000363259/1-1435 KLLTPIIPSK HALDSADSQP AERTPSPPGQ LNGYQEKEPS ECQSRDSYKS ENSBTAP00000054184/1-1435 KLLTPVIPTK QVLESSDSQP AEITPTPPGQ LNGYQEKDPS DCQSRDSYKS ENSTTRP00000014112/1-1379 KLLTPVIPNK HVLESSNSQP AEVTPSPIGQ LNGYQEKEPG ECQSWDSYKS bmy_04273T0/1-1431 KLLTPVIPSK RVLESSNSQP AEITPSPTGQ LNGYQEKEPS ECQSRDSYKS BACU007606/1-1431 KLLTPVIPSK HVLESCHSQP AEITPSPTGQ LNGYQEKEPS ECQSRDSYKS 501 550 ENSP00000363259/1-1435 KAPSLLFNLK DVRKRVKSTY SSSPLLKVLD EKTRGKVDGK QEPVSNGVIL ENSBTAP00000054184/1-1435 KAPSLLFNLK DVRKRVKSTY SPSPLMKGPD EKTR----GN QESLSNGGLL ENSTTRP00000014112/1-1379 KAPSLLFNLK DVRKCVKSTY SPSPLLKGPD EKTR----GK QESLSNGGLL bmy_04273T0/1-1431 KAPSLLFNLK DVRKRVKSTY SPSPLLKGPD EKSR----GK QESLSNGGLL BACU007606/1-1431 KAPSLLFNLK DVRKRMKSTY SPSPLLKGPD EKTR----GK QESLSNGGLL 551 600 ENSP00000363259/1-1435 PNGLEESPPN ELSKERPADD PTASHINPQK DPTADPSEPS ADSYLTLSTA ENSBTAP00000054184/1-1435 PNGLEENPPD EFSKETPDDS PSVPLTSTQK DPKADPDAAS ADTYLTPTSP ENSTTRP00000014112/1-1379 PNGLEEGPPD ELSKETPADA PPVSLISTQK DPKADAGAAS ADNYLTLTSP bmy_04273T0/1-1431 PNGLEEGPPD ELSKETPADA PSVSLISTQK DPKADPGAAS ADNYLTLTSP BACU007606/1-1431 PNGLEEGPPG ELSKETPADA PPVSLISTQK DPKADPGAAS ADNYLTLTSP 601 650 ENSP00000363259/1-1435 PTIAKAPFYV NGEAAERSSY ENKEVEGELE MGPAGSSWCP DSREHRPRKH ENSBTAP00000054184/1-1435 SIITKAPFCV NGEAANRNNY EKDDTNGESE MHDARPSWRS DSRQRLHRKH ENSTTRP00000014112/1-1379 SPNAKAPFCV NGEAGDRNSY EKDDASGESE MGGARPSWRP DSREHCPRKH bmy_04273T0/1-1431 SPNTKAPFCV NGEADDRNSY EKDDANGESE MGGARRSWRP DSREHCPRKH BACU007606/1-1431 SPNTKAPFCV NGEADDRNSY EKDDANGGSE MGGARSSWHP DSREHCPRKH 651 700 ENSP00000363259/1-1435 LSLRLCNRDP EPGGATEKMK THQLENGLSR SVSQETEPER EAGLQNTHLN ENSBTAP00000054184/1-1435 LSLKLCSEDP EAGKAAETQK TSGLENGFLR SISQETEPER QAGLQNPNFN ENSTTRP00000014112/1-1379 LSLKLCSGDP EAGKAAETPK TSGLENGFLR SVSQDTEPER EARLQNPNFN bmy_04273T0/1-1431 LSLKFCSGDP EAGKAAETPK TSGLENGFLR SVSQDTEPER EARLQNPNFN BACU007606/1-1431 LSLKFCSGDP EAGKAAETPK TSGLENGFLR SVSQDTEPER EARLQNPNFN 701 750 ENSP00000363259/1-1435 QKFFPGPLSP EEEDVFYSDS QSDFMPSLKG KAKFSTSSSD QSFASFDDQQ ENSBTAP00000054184/1-1435 PKFSPGPLSP EEEDVFYSDS QSDFMPGLKS KAKFSTSSSD QSFASFEDQQ ENSTTRP00000014112/1-1379 QKFSPGPLSP EEEDVFYSDS QYDFMPGLKS KSKFSTSSSD QSFASFEDQQ bmy_04273T0/1-1431 QKFSPGPLSP EEEDVFYSDS QSDFMPALKS KAKFSTSSSD QSFASFEDHQ BACU007606/1-1431 QKFSPGPLSP EEEDVFYSDS QSDFMPALKS KAKFSTSSSD QSFASFEDQQ 751 800 ENSP00000363259/1-1435 KMWFTENQRE DRRKDVSAGD SQKDEKENVM RKDELQYCAL SNGHACLENR ENSBTAP00000054184/1-1435 KTWFAETQQE DGRNNMNAGD GWKDEQEKVM EEDELEYGAV SNGNACVEEH ENSTTRP00000014112/1-1379 KTWFSESQQE ERRNDVSVGD SQKDEKEKVM EEDELQYRTL SNGHSCMEEH bmy_04273T0/1-1431 KTWFAESQQE DRRSDVSVGD GQKDEKEKVM EEGELQYCTL SNGHACVEEH BACU007606/1-1431 KTWFAESQQE DRRSDVSVGD GQKDEKEKVM EEGELQYCTL SNGHACVEEH 801 850 ENSP00000363259/1-1435 SQGEALQRER ESVSGGR--- TRKASAEEAN FRGSWIGENK -GTTFSQAKD ENSBTAP00000054184/1-1435 SKRESLP-EE ESLPGGS--- PRKAPREEAD FRRTGTGGSK SDTALPHAGG ENSTTRP00000014112/1-1379 SKWESLQGEE ESLPEGS--- PGKASREEAD FRGTGIGGSK -DTALSHAKD bmy_04273T0/1-1431 SKRESSQGEE ESLPEGSPGD PGKASREEAN FRGTGIGGSK -DTALSDAKD BACU007606/1-1431 SNWESSQGEE ESLPEGSPGD PGKAPREEAN FRGTGIGGSK -DTALSDAKD 851 900 ENSP00000363259/1-1435 LTPSPSSASN RHMLFTIKDN TLRATPVIKP IMLPLLRTMS LEDSLSSGHK ENSBTAP00000054184/1-1435 LAPSPGSTSN KHILFTIKDN TLRATPVIKP IMLPLLRSVS SESPLGSGHK ENSTTRP00000014112/1-1379 LTPSPCSTSN KHILFAIKDN TLRATPVIKP IMLPLLRSMS SDSLLGTGHK bmy_04273T0/1-1431 LIPSPCSTSN KHTFFAIKDN TLRATPMIKP IMLPLLRSIS SESLLGNGHK BACU007606/1-1431 LIPSPCSTSN KHILFAVKDN TLRATPMIKP IMLPLLRSMS SESLLGNGHK 901 950 ENSP00000363259/1-1435 EEELPRPEWG EDPGFCAPEN QDILGTSTPT NTRGTRVKCM ANEVMEDPGQ ENSBTAP00000054184/1-1435 EEELPRPGWG GDAGLCAPES QEMPSTLTPT SARGTHVKGV ACEGLEGQER ENSTTRP00000014112/1-1379 EEELPRPGWG RDAGLCAPDS REMPSTLPPT RVQGTHLKGA ACEDMEDRGW bmy_04273T0/1-1431 EEELPRPGWG RDAGLCAPES QEMPSTLTPA SVQGTHLKGA ACEDMEDHGL BACU007606/1-1431 EEELPRPGWG RDAGLCAPES QEMPSTLTPA SVQGTHLKGA ACEDMEDHGW 951 1000 ENSP00000363259/1-1435 GSSMARMEAS QPAPKGNFPS MPLVGEGDRV KAPPDAAPGL VASNCKSGSA ENSBTAP00000054184/1-1435 VPSATRPEAS QAAPKWHVPS SPLTGEGQGL KPPQKATQKV TVNNCKSGST ENSTTRP00000014112/1-1379 GPSAARSETS QAAPKGYVPF PPLTGEGQGL KPPREAVHKV VASNGKSSSI bmy_04273T0/1-1431 CPSAARSETS QAAPKGYVPF PPLTGEGQGL KPPREAIHKV VAKNGKSSSI BACU007606/1-1431 DPNAARSETS QAAPKGYVPF SPLTGEGQGL KPPREAIHKV VANNGKSSSI 1001 1050 ENSP00000363259/1-1435 DSGKLAAPWH IPTIALPEGD IEDQPPPWQP ENCWEEQTPG FKSHFLSTPR ENSBTAP00000054184/1-1435 DPVKLDAPRC IPTITLPEDD PEDQLPPQQL GAFWEEQVQG FNSHFLSTPR ENSTTRP00000014112/1-1379 DQGKLDAPMC IPTIALPEGD LEDQPPLQKL GTRWEEQAQG FQSHFLSTPR bmy_04273T0/1-1431 DQGKLDAPRC IPTIALPEGD LEDQPPLQKL GTCWEEQVQG FKSHFLSTPR BACU007606/1-1431 DQGKLDAPRC IPTIALPEGD LEDQPRLQKL GTCWEEQVQG FKSHFLSTPR 1051 1100 ENSP00000363259/1-1435 AGPPGRRLVP SERANSPNPG SPGESSACSP AASNIWEESS QAPGGPELLP ENSBTAP00000054184/1-1435 AGPPGRRWVT GELAASPNAS SLEENSACSP AASSIWDDAS QALSEPGLLP ENSTTRP00000014112/1-1379 AQPPGRRLVP GELAASPSAS SLEENSACSP ATSSIYDDAY QAPSEPSLLP bmy_04273T0/1-1431 ARPPGRRLVP GELAASPNAS SLEENSTCSP ATSSIWDDAY QAPSEPSLLP BACU007606/1-1431 ARPPGRRLVP GELAASPNAS SLEENSACSP ATSSIWGDAY QAPSEPSLLP 1101 1150 ENSP00000363259/1-1435 EEPNQASPWA SSSPARVTRR EDLTHALVWE GGSDPLLELS AEDLRTLSPR ENSBTAP00000054184/1-1435 GEPPRSSPWA SPSPGRVARR EDLTHALAWE PGSDPQLEPS AEDLRTLSPR ENSTTRP00000014112/1-1379 GEPPRSSPWA SSRPGRVAQR EDLTHALTWE PGSDPQLESS AEDLRTLSPR bmy_04273T0/1-1431 GEPPRSRPWA SPRPGRVAQR KDLTHALTWG PGSDPQLEPS AEDLRTLSPR BACU007606/1-1431 GEPPRSSPWA SPRPGRVAQR EDLTHALTWG PGSDPQLEPS AEDLRTLSPR 1151 1200 ENSP00000363259/1-1435 GSLLDVATSP AGTSGRLELP AQLERTASKP PAVPPKTEKA LRRAKKLASK ENSBTAP00000054184/1-1435 GSLLDVATSS ASLLEKPEPP AQLERAAGKP PAVPPKTEKA LRRAKKLASK ENSTTRP00000014112/1-1379 GSLLDVTTSS AGLLEKPEPP SQLERAAGKP PAVPPKTEKA LRRAKKLASK bmy_04273T0/1-1431 GSLLDVATNS AGLLEKPEPP AQLERAAGKP PAVPPKTEKA LRRAKKLASK BACU007606/1-1431 GSLLDVATSS AGLLEKPEPP AQLERAAGKP PAVPPKTEKA LRRAKKLASK 1201 1250 ENSP00000363259/1-1435 RRKTDQAQEK HGESQEGKPC PEDLEQTQQR PLCPRERPRH NFPVVRSLPP ENSBTAP00000054184/1-1435 RRKINQPQEK HGERREEKLN PED---SERR PLSPGERPRP RLPVVRALPP ENSTTRP00000014112/1-1379 RRKTDQPQEK HGERREEKLH PED---SERR PPSPGERPPA RFPVVRSLPP bmy_04273T0/1-1431 RRKTDQPQEK HGERREEKLY PED---SEHR PPSPGEKPPA RFPMVRSLPP BACU007606/1-1431 RRKTDQPQEK HGERQEEKLY PED---SERR PPSPGEKPPA RFPMVRSLTP 1251 1300 ENSP00000363259/1-1435 PVHRHSVSGF SEPVGRRPGG PQSLTPLPAY PATQKVLQDP QSGEYFVFDL ENSBTAP00000054184/1-1435 PAHRHSVSAL SEPVQRRPGG PQSLTPQPPY PATQKVLQDP QSGEYFVFDL ENSTTRP00000014112/1-1379 PVRRHSVSAF SEPIQRRPGG SQSLTPLSPY PATQKVLQDP QSGEYFVFDL bmy_04273T0/1-1431 PVRRHSVSAF SEPIRRRPGG SQSLTPLSPY PATQKVLQDP QSGEYFVFDL BACU007606/1-1431 PVRRHSVSAF SEPIQRQPGG SQSLTPLSPY PATQKVLQDP QSGEYFVFDL 1301 1350 ENSP00000363259/1-1435 PLQVKIKTFY DPETGKYVKV SIPSSEGASP EPPPPDALAA PYVLYPGFQP ENSBTAP00000054184/1-1435 PLQVKIKTFY DPETGKYVKV SIPSSEGASP EPTPLDALAA PYVLYPGFRP ENSTTRP00000014112/1-1379 PLQVKIKTFY DPETGKYVKV SIPSSEGGSP EPSPPDALAA PYVLYPGFRP bmy_04273T0/1-1431 PLQVKIKTFY DPETGKYVKV SIPSSEGGSP EPSPPDALAG PYVLYPGFRP BACU007606/1-1431 PLQVKIKTFY DPETGKYVKV SIPSSEGGSP EPSPLDALAA PYVLYPGFRP 1351 1400 ENSP00000363259/1-1435 VPVTALMPLR CSSQLSAPTF LRQGPR-ASA ARARTQSVHE SGLQLDPGPH ENSBTAP00000054184/1-1435 LPVTALMPLR CSSQLSAPTF LRQRPHTAEA AGLRPQSVHE VGLQLPSAAP ENSTTRP00000014112/1-1379 LPVTALMPLR CSSQLSAPTF LRQRPHTNEA AGPRPQSAQD A--------- bmy_04273T0/1-1431 LPVTALMPLR CSSQLSAPTF LRQHPHTAEA AGPRPQSAQD AGLQLTSEPP BACU007606/1-1431 LPVTALMPLR CSSQLSAPTF LRQHPHTAEA AGPRPQSAQD AGLQLASEPP 1401 1450 ENSP00000363259/1-1435 GDCTPHSAGQ RPHGPPQSPG EEGVEAPGLG IISTDDLEDF ATEGIS ENSBTAP00000054184/1-1435 SNPTQPSAGQ RPEGHPQSAG QEGGDAPSLG IIPTNDLEDF ATEGIS ENSTTRP00000014112/1-1379 ---------- ---------- ---------- ---------- ------ bmy_04273T0/1-1431 SDPTQQS--- --EGRPQSPG EEVGDAPSLD IISTNDLEDF AMEGIS BACU007606/1-1431 SDPAQHS--- --EGHPQSPG EEVGDAPSLD IISTNDLEDF AMEGIS