KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:45 2014 Check: 00 .. Name: ENSP00000321874/1-372 Len: 373 Check: 4371 Weight: 1.00 Name: ENSBTAP00000054222/1-372 Len: 373 Check: 2214 Weight: 1.00 Name: bmy_02606T0/1-298 Len: 373 Check: 6126 Weight: 1.00 Name: ENSTTRP00000007319/1-228 Len: 373 Check: 9498 Weight: 1.00 // 1 50 ENSP00000321874/1-372 MKYLRHRRPN ATLILAIGAF TLLLFSLLVS PPTCKVQEQP PAIPEALAWP ENSBTAP00000054222/1-372 MRCSRPLRKE AGLALLLATF TLLLLSLHWS PPTCPHLKEP PRAPKAPDWP bmy_02606T0/1-298 ---------- ---------- --------MS PPTCPGLKEP PGTPVALVWP ENSTTRP00000007319/1-228 MRCSRHLRTE LGLAVALGTF TLLLLFNLRS PPTCPGLKEP PGTPVALVWP 51 100 ENSP00000321874/1-372 TPPTRPAPAP CHANTSMVTH PDFATQPQHV QNFLLYRHCR HFPLLQDVPP ENSBTAP00000054222/1-372 SPHFRAPPAP CQPNTSLMSL PDFAGQPPHI RDFLLYKHCR DFALLQEVPP bmy_02606T0/1-298 SP-----PAP CLANTSMAAL SDFARQPQHI RNFLLYKHCR DFVLLQDVPP ENSTTRP00000007319/1-228 SPPSRPPPTP RLANSSMAAL PDFTRQPPHI RNFLLYKHCR DVVLLQDVPP 101 150 ENSP00000321874/1-372 SKCAQPVFLL LVIKSSPSNY VRRELLRRTW GRERKVRGLQ LRLLFLVGTA ENSBTAP00000054222/1-372 DKCADPVFLL LVIKSSPSNY ERRELVRRTW GRERQILGVQ LRRLFLVGTD bmy_02606T0/1-298 DKCVQPVFLL LVIKSSPSNY EHRELVRCRW GRERQVRGVQ LRRLFLVGTD ENSTTRP00000007319/1-228 DKCVQPVFLL LVIKSSPSNY EHRELVWLRW GRKRQVHGV- LRRLFLVGTD 151 200 ENSP00000321874/1-372 SNPHEARKVN RLL-ELEAQT HGDILQWDFH DSFFNLTLKQ VLFLQWQETR ENSBTAP00000054222/1-372 SNPLEARKVN RLL-AMEART HEDILQWDFY DTFFNLTLKQ VLFLQWQKTR bmy_02606T0/1-298 PNSLEAREVN RLCSSYSGRR HG-------- ---------- ---------- ENSTTRP00000007319/1-228 PNPPETRKVN RL--AMEARM HGDILQWDFY DSFFNLTLKQ VLFLQWQKTR 201 250 ENSP00000321874/1-372 CANASFVLNG DDDVFAHTDN MVFYLQDHDP GRHLFVGQLI QNVGPIRAFW ENSBTAP00000054222/1-372 CTNASFLLNG DDDVFAHTDN MVAYLQSHNP DHHLFVGHLI HDVGPIRIPW bmy_02606T0/1-298 -AHASFMLNW DDDVFAH--- ---------P DHHLSVGQLT HSVCPVCLPW ENSTTRP00000007319/1-228 C--ASFMLNW DDDVFAHPDN VVTYLQGDNP ---------- ---------- 251 300 ENSP00000321874/1-372 SKYYVPEVVT QNERYPPYCG GGGFLLSRFT AAALRRAAHV LDIFPIDDVF ENSBTAP00000054222/1-372 SKYYVPKVIM EEEHYPPYCG GGGFLLSRFT ATALRHASRT LDLFPIDDVF bmy_02606T0/1-298 SKYYVPKVVT EEEHYPPYCG GGGFLLSRFT ATALRHSTPP PPPWTSSPLL ENSTTRP00000007319/1-228 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000321874/1-372 LGMCLELEGL KPASHSGIRT SGVRAPSQRL SSFDPCFYRD LLLVHRFLPY ENSBTAP00000054222/1-372 LGMCLKQEGL EPASHSGIRT AGVQSPSSRL SSFDPCFYRE LLLVHRFLPY bmy_02606T0/1-298 MS-SWACAKS RRASHSGILT AGVQAPSSCL SSSDPCFYRE LPLVHRFLPY ENSTTRP00000007319/1-228 ---------- ---------- ---------- -----DHH-- ---------- 351 400 ENSP00000321874/1-372 EMLLMWDALN QPNLTCGNQT QIY ENSBTAP00000054222/1-372 EMLLMWDALS QPNVTCGRQG QVY bmy_02606T0/1-298 EMLLMWDVLN QPNLTCDKRT QIY ENSTTRP00000007319/1-228 ---------- ---------- ---