KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:45 2014 Check: 00 .. Name: BACU001476/1-251 Len: 459 Check: 4856 Weight: 1.00 Name: ENSP00000437468/1-439 Len: 459 Check: 9214 Weight: 1.00 Name: bmy_07596T0/1-365 Len: 459 Check: 3703 Weight: 1.00 Name: ENSBTAP00000054229/1-449 Len: 459 Check: 6839 Weight: 1.00 // 1 50 BACU001476/1-251 MVPKRKRGPS AGRR-SGAAG EGTEPPLSES AQSLQRKYKL LSEQLDACEE ENSP00000437468/1-439 MAPKKKRGPS AGSQPGGAAA AGAEQPLSER AQYLQREHAL LSEQLDTCEE bmy_07596T0/1-365 MVPKRKRGPS AGRR-SGAAG EGTEPPLSES AQYLQRKYKL LSEQLDACE- ENSBTAP00000054229/1-449 MAPKKKRGPG AGRR-GGAAG EGTEPPLSER AQYLQREHKL LSEELEACKQ 51 100 BACU001476/1-251 RVDQALQENA FLECEAQRLR EESRLYASYV STRAQRCANA IVRLEEQNRA ENSP00000437468/1-439 SVDQVLRENA FLDREALRLR EENRLYASYV SARAQRCAKA IVRLDEQNRV bmy_07596T0/1-365 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054229/1-449 RVDQVLQEND FLDSEAPRLR EENRLYASYA STRAQRCANA IVRLEEQNRV 101 150 BACU001476/1-251 DLTQIHLQRA ELASLYRGRE EGVRAQLLEM EARAAQVARQ VQELQPYKAS ENSP00000437468/1-439 DLAQIHWQRA ELASLYHGRE DGVRAQLLEM EARAAQMAQQ VQELQPYKVL bmy_07596T0/1-365 ---------- ---------- -GVRAQLLEM EARAAQMARQ --------EL ENSBTAP00000054229/1-449 SLSQIHWQRA ELASIYRGRE DGVRAQLLEM EARAAQMAQQ VQELQPYKEL 151 200 BACU001476/1-251 LV-------- ---------- ---------- ---------- ---------- ENSP00000437468/1-439 QLEQLARIRA LERELLHMRV EHTQLLHRVK RRFLEDKAAF EREARQRVQS bmy_07596T0/1-365 QLEQLARIRA LERELLRMRV EHMQLLHREK RRFLEDKAAF EREAHQRVQS ENSBTAP00000054229/1-449 QLEQLARIRA LERELLHMRV EHTQLLHRVK RRFLEDKAAF EREARQRVQS 201 250 BACU001476/1-251 ---------A RGLLGPIVAV EARGSLGPV- ---------- ---------- ENSP00000437468/1-439 LARRAEREAV RALVAHTQAI --KADNGRLR QELLLLLRRT QLLHHTRRQL bmy_07596T0/1-365 LARRAEREAA RALIAHTQAV --RGDNGRLR QELLRLLRRA QVLHDTRRRL ENSBTAP00000054229/1-449 LARRAEREAA RALLAHTQAI --RVDNGRLR QELLRLLRRA QVLQDTRRQL 251 300 BACU001476/1-251 ---------- ------IGPI ACWLQGPVAG P--------- ---------- ENSP00000437468/1-439 LEQREQLHRE HEDTRDLARV HGWLRRGPGG PPLWERPA-- ---------- bmy_07596T0/1-365 LEQREQLRRE HEDMRDLARV HSWLRRGPEG PPLWQPPLAS SHPESFASTT ENSBTAP00000054229/1-449 LEQREQLRRE HEDTRDLARV HGWLRRGPEG PPLWEPSPAA SDPESFPSKT 301 350 BACU001476/1-251 -FEGGIT--G PMPGP----- ---------- -IARELQGPV LDPVTPGFLG ENSP00000437468/1-439 -FSQPTSRPG SLAAPISPS- ---RAASQTP SVVPSRAAPR ASSVVPSREA bmy_07596T0/1-365 IQSRATSRVA SVSASRNPSQ VSWRAASWAP SLLSKLAVPW VPSSVPSRVG ENSBTAP00000054229/1-449 -PSNATFRVP SVPASHNPSQ VLCRADSWTP SLPSKVSVPR VPSLVPSRVG 351 400 BACU001476/1-251 P--------- ---------- ------FSVL IVCRLTEHHP ---------- ENSP00000437468/1-439 SRVPSLVLSS MDSRVPSLAT SKVGSRMPSL TASRAGSRAL SLVQSLEGSG bmy_07596T0/1-365 SRVLSLAPSK AGSRVPCQDP SHGSSRVPSL TLSRPGSRVP SLTPS----- ENSBTAP00000054229/1-449 TRVLSLAPSK ASLRVP---- SHVGSRVQSL SVSRPGSRVP SLTPSGPGSG 401 450 BACU001476/1-251 ---------- ---------- -----LWEVR PRVGLFPSPS RRRP------ ENSP00000437468/1-439 ISS-GSSPRV SSQDTLRSTK SGPKLLSGLS RDRDPALLPP QSEDSVNAEA bmy_07596T0/1-365 ----RLDSWA PPRSSLRAAS QNTTLSGKSV PGSGSSRLPV EGDR--ECDA ENSBTAP00000054229/1-449 VASLTTDSQF SSRSSLRAAS QNTILSGKLV PRSSSYPLPV EGDG--DRDA 451 500 BACU001476/1-251 --------- ENSP00000437468/1-439 AAEASPGRA bmy_07596T0/1-365 AGEGALGRS ENSBTAP00000054229/1-449 ADEAASGRA