KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:47 2014 Check: 00 .. Name: ENSBTAP00000054262/1-407 Len: 537 Check: 9118 Weight: 1.00 Name: bmy_19717T0/1-403 Len: 537 Check: 4674 Weight: 1.00 Name: ENSTTRP00000002760/1-412 Len: 537 Check: 402 Weight: 1.00 Name: BACU007520/1-488 Len: 537 Check: 2324 Weight: 1.00 // 1 50 ENSBTAP00000054262/1-407 MVCFRLAPVP GSGFLLLCLV LGAVSSYALE LNLTDSSNAT CLYAKWQMNF bmy_19717T0/1-403 ---------S NLKILLFSIN LGAVSSYALE LNLTDSENAT CLYAKWQMNF ENSTTRP00000002760/1-412 MVCFRLAPVP GSGLLLLCLV LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU007520/1-488 ---------- ---------- ---------- ---------- -------MNF 51 100 ENSBTAP00000054262/1-407 TIRYETTDKH NKTVPISDLG AATYNGSFCG DDQNGPKIAV QFGSGFSWIV bmy_19717T0/1-403 TIHYETTDKH NKTVTISDLG AAKYSGSSCG DDQNGSKIAV QFGSGFSWIV ENSTTRP00000002760/1-412 XXXXXXXXXX XKTVTISDLG PATYSGSSCG DDQNGPKIAV QFGSGFSWIV BACU007520/1-488 TIRYETTDKH NKTVTISDLG AAKYNGSSCG DDQNGPKIAV QFGSGFSWIV 101 150 ENSBTAP00000054262/1-407 NFTKEAASPS TYLVDTISFS YNTNDNKTFP DAKEKEVFTV NNRVALKIPL bmy_19717T0/1-403 NFTEEETSS- -YSIDSISFS YDTNDSTTFP DAKEKGVFTV SDRLAFKVPL ENSTTRP00000002760/1-412 NFTEEKSF-- -YSIDSISFS YNMNDNTTFP DAKEKGVFTV SDHVAFRVPL BACU007520/1-488 NFTQEETSS- -YSIDSISFS YNTNDSTTFP DAKEKGVFTV SDHVAVRVPL 151 200 ENSBTAP00000054262/1-407 NDIFRCNSLS TLENRDVVQH YWDVHVQAFV QNGTVSTTEF LCDKDKTVTT bmy_19717T0/1-403 NDIFRCNSLL TLGKNDVVQH YWDVHVQAFV QNGTVSTKEF LCDKDKTLTT ENSTTRP00000002760/1-412 NDIFRCNSLL TLGKNDVVQH YWDVHVQAFV QNGTVSTKEF LCDKDKTLTT BACU007520/1-488 NDIFRCNSLL TLGKNDVVQH YWDVHVQAFV QNGTVSTKEF LCDKDKTLTT 201 250 ENSBTAP00000054262/1-407 AVPIVPTTLP SPT------- KPVVGSYSVV NSNGTCLLAT MGLQLNITHD bmy_19717T0/1-403 VVPIVPTTVP SPTTTPSPKE KPEVGSYSVV NSNGTCLLAT MGLQLNVTHD ENSTTRP00000002760/1-412 VLPIVPTTVP SPTTTPSPKE KPEVGSYSVV NSNGTCLLAT MGLQLNITHD BACU007520/1-488 VVPIVPTTVP SPTTTPSPKE KPEVGSYSVV NSNGTCLLAT MGLQLNITHD 251 300 ENSBTAP00000054262/1-407 K--------- ---------- ---------- ---------- ---------- bmy_19717T0/1-403 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000002760/1-412 K--------- ---------- ---------- ---------- ---------- BACU007520/1-488 KGIRFDPENP QTLRLEFAKA NTKMAKNKLM ATPNPTNAHP ALGAHFIARD 301 350 ENSBTAP00000054262/1-407 ---------- ---------- ---------- ---------- ---------- bmy_19717T0/1-403 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002760/1-412 ---------- ---------- ---------- ---------- ---------- BACU007520/1-488 PYDLMGAALI PASPEAWAPY PLYTTELTPA ISHAAFTYPA ATAAAAAALH 351 400 ENSBTAP00000054262/1-407 --VASVFNIN PNTTNATGSC QPQTALLRLS SSNIKYLDFV FAV------- bmy_19717T0/1-403 --VASVININ PNTTNFTGSC HPQTALLRLS SSSIKYLDFV FAV------- ENSTTRP00000002760/1-412 --VASVININ PNTTNFTGSC HPQTALLRLS SSSIKYLDFV FAV------- BACU007520/1-488 AQVASVININ PNTTNFTGSC HPQTALLRLS SSSIKYLDFV FAVTLTVPVD 401 450 ENSBTAP00000054262/1-407 ---------- ----KNENRF YLKEVNVSMI LVNGSVYSIS NTNLSYWDAP bmy_19717T0/1-403 ---------- ----KNENRF YLKEVNVSMY LVNGSVFSIA NNNLSYWDAP ENSTTRP00000002760/1-412 ---------- ----KNENRF YLKEVNVSMY LVNGSVFSIA NNNLSYWDAP BACU007520/1-488 SCDALINWKL FFTQKNENRF YLKEVNVSMY LVNGSVFSIA NNNLSYWDAP 451 500 ENSBTAP00000054262/1-407 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FSVTEGKYST AQDCSADDD- bmy_19717T0/1-403 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FNVMEGKYST AQDCSADDD- ENSTTRP00000002760/1-412 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FNVMEGKYST AEECSADSDL BACU007520/1-488 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FNVMEGKYST AGEGSADSDL 501 550 ENSBTAP00000054262/1-407 NFLVPIAVGA ALAGVLILVL LAYFIGLKRH HAGYEQF bmy_19717T0/1-403 NFLVPIAVGA ALAGVLILVL LAYFIGLKRH HAGYEQF ENSTTRP00000002760/1-412 NFLIPVAVGV ALGFLIIVVF ISYMIGRRKS RTGYQSV BACU007520/1-488 NFLIPVAVGV ALGFLIIVVF ISYMIGRRKS RTGYQSV