KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 18:23:47 2014 Check: 00 ..
Name: ENSBTAP00000054262/1-407 Len: 537 Check: 9118 Weight: 1.00
Name: bmy_19717T0/1-403 Len: 537 Check: 4674 Weight: 1.00
Name: ENSTTRP00000002760/1-412 Len: 537 Check: 402 Weight: 1.00
Name: BACU007520/1-488 Len: 537 Check: 2324 Weight: 1.00
//
1 50
ENSBTAP00000054262/1-407 MVCFRLAPVP GSGFLLLCLV LGAVSSYALE LNLTDSSNAT CLYAKWQMNF
bmy_19717T0/1-403 ---------S NLKILLFSIN LGAVSSYALE LNLTDSENAT CLYAKWQMNF
ENSTTRP00000002760/1-412 MVCFRLAPVP GSGLLLLCLV LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
BACU007520/1-488 ---------- ---------- ---------- ---------- -------MNF
51 100
ENSBTAP00000054262/1-407 TIRYETTDKH NKTVPISDLG AATYNGSFCG DDQNGPKIAV QFGSGFSWIV
bmy_19717T0/1-403 TIHYETTDKH NKTVTISDLG AAKYSGSSCG DDQNGSKIAV QFGSGFSWIV
ENSTTRP00000002760/1-412 XXXXXXXXXX XKTVTISDLG PATYSGSSCG DDQNGPKIAV QFGSGFSWIV
BACU007520/1-488 TIRYETTDKH NKTVTISDLG AAKYNGSSCG DDQNGPKIAV QFGSGFSWIV
101 150
ENSBTAP00000054262/1-407 NFTKEAASPS TYLVDTISFS YNTNDNKTFP DAKEKEVFTV NNRVALKIPL
bmy_19717T0/1-403 NFTEEETSS- -YSIDSISFS YDTNDSTTFP DAKEKGVFTV SDRLAFKVPL
ENSTTRP00000002760/1-412 NFTEEKSF-- -YSIDSISFS YNMNDNTTFP DAKEKGVFTV SDHVAFRVPL
BACU007520/1-488 NFTQEETSS- -YSIDSISFS YNTNDSTTFP DAKEKGVFTV SDHVAVRVPL
151 200
ENSBTAP00000054262/1-407 NDIFRCNSLS TLENRDVVQH YWDVHVQAFV QNGTVSTTEF LCDKDKTVTT
bmy_19717T0/1-403 NDIFRCNSLL TLGKNDVVQH YWDVHVQAFV QNGTVSTKEF LCDKDKTLTT
ENSTTRP00000002760/1-412 NDIFRCNSLL TLGKNDVVQH YWDVHVQAFV QNGTVSTKEF LCDKDKTLTT
BACU007520/1-488 NDIFRCNSLL TLGKNDVVQH YWDVHVQAFV QNGTVSTKEF LCDKDKTLTT
201 250
ENSBTAP00000054262/1-407 AVPIVPTTLP SPT------- KPVVGSYSVV NSNGTCLLAT MGLQLNITHD
bmy_19717T0/1-403 VVPIVPTTVP SPTTTPSPKE KPEVGSYSVV NSNGTCLLAT MGLQLNVTHD
ENSTTRP00000002760/1-412 VLPIVPTTVP SPTTTPSPKE KPEVGSYSVV NSNGTCLLAT MGLQLNITHD
BACU007520/1-488 VVPIVPTTVP SPTTTPSPKE KPEVGSYSVV NSNGTCLLAT MGLQLNITHD
251 300
ENSBTAP00000054262/1-407 K--------- ---------- ---------- ---------- ----------
bmy_19717T0/1-403 K--------- ---------- ---------- ---------- ----------
ENSTTRP00000002760/1-412 K--------- ---------- ---------- ---------- ----------
BACU007520/1-488 KGIRFDPENP QTLRLEFAKA NTKMAKNKLM ATPNPTNAHP ALGAHFIARD
301 350
ENSBTAP00000054262/1-407 ---------- ---------- ---------- ---------- ----------
bmy_19717T0/1-403 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000002760/1-412 ---------- ---------- ---------- ---------- ----------
BACU007520/1-488 PYDLMGAALI PASPEAWAPY PLYTTELTPA ISHAAFTYPA ATAAAAAALH
351 400
ENSBTAP00000054262/1-407 --VASVFNIN PNTTNATGSC QPQTALLRLS SSNIKYLDFV FAV-------
bmy_19717T0/1-403 --VASVININ PNTTNFTGSC HPQTALLRLS SSSIKYLDFV FAV-------
ENSTTRP00000002760/1-412 --VASVININ PNTTNFTGSC HPQTALLRLS SSSIKYLDFV FAV-------
BACU007520/1-488 AQVASVININ PNTTNFTGSC HPQTALLRLS SSSIKYLDFV FAVTLTVPVD
401 450
ENSBTAP00000054262/1-407 ---------- ----KNENRF YLKEVNVSMI LVNGSVYSIS NTNLSYWDAP
bmy_19717T0/1-403 ---------- ----KNENRF YLKEVNVSMY LVNGSVFSIA NNNLSYWDAP
ENSTTRP00000002760/1-412 ---------- ----KNENRF YLKEVNVSMY LVNGSVFSIA NNNLSYWDAP
BACU007520/1-488 SCDALINWKL FFTQKNENRF YLKEVNVSMY LVNGSVFSIA NNNLSYWDAP
451 500
ENSBTAP00000054262/1-407 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FSVTEGKYST AQDCSADDD-
bmy_19717T0/1-403 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FNVMEGKYST AQDCSADDD-
ENSTTRP00000002760/1-412 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FNVMEGKYST AEECSADSDL
BACU007520/1-488 LGSSYMCNKE QTVSVSGAFQ INTFDLRVQP FNVMEGKYST AGEGSADSDL
501 550
ENSBTAP00000054262/1-407 NFLVPIAVGA ALAGVLILVL LAYFIGLKRH HAGYEQF
bmy_19717T0/1-403 NFLVPIAVGA ALAGVLILVL LAYFIGLKRH HAGYEQF
ENSTTRP00000002760/1-412 NFLIPVAVGV ALGFLIIVVF ISYMIGRRKS RTGYQSV
BACU007520/1-488 NFLIPVAVGV ALGFLIIVVF ISYMIGRRKS RTGYQSV