KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:50 2014 Check: 00 .. Name: ENSBTAP00000054300/1-683 Len: 867 Check: 637 Weight: 1.00 Name: bmy_20288T0/1-423 Len: 867 Check: 8223 Weight: 1.00 Name: ENSP00000262085/1-671 Len: 867 Check: 7876 Weight: 1.00 Name: BACU010917/1-684 Len: 867 Check: 5915 Weight: 1.00 Name: ENSTTRP00000014861/1-655 Len: 867 Check: 7519 Weight: 1.00 // 1 50 ENSBTAP00000054300/1-683 ---------- -----MQFVS TRPQPQQ--- ---------- ---------L bmy_20288T0/1-423 MELSGPGEGE GAWKTFFFSL AGPSGEQRSQ DAVCVNTAAA SAAGHPGPGA ENSP00000262085/1-671 ---------- -----MQFVS TRPQPQQ--- ---------- ---------L BACU010917/1-684 ---------- -----MQFVS TRPQPQQ--- ---------- ---------L ENSTTRP00000014861/1-655 ---------- -----MQFVS TRPQPQQ--- ---------- ---------L 51 100 ENSBTAP00000054300/1-683 GIQGLAHEDS SWSRQREVAC ---------- ---------- -DSLGHPRSS bmy_20288T0/1-423 GQRELELGAG SA-PGGGLPP GAGAARGNGR GNAAHAASER TENDTSSCPM ENSP00000262085/1-671 GIQGLGLDSG SWSWAQALPP ---------- ---------- -EEVCHQEPA BACU010917/1-684 GIQGLGLDGG SWSWAQALPP ---------- ---------- -EEVCHQEPA ENSTTRP00000014861/1-655 GIQGLGLDSG SWSWAQALPP ---------- ---------- -EEVCHQKPA 101 150 ENSBTAP00000054300/1-683 HGVSCRPSL- ---PLLCPQA QEWDMDARRP MPFQFPPFPD RAPVFPDRMM bmy_20288T0/1-423 WQGEAISALL SSKPWV--LA QEWDMDARRP MPFQFPPFPD RAPVFPDRMM ENSP00000262085/1-671 LRGEMAEGM- ---PPM--QA QEWDMDARRP MPFQFPPFPD RAPVFPDRMM BACU010917/1-684 LRGEMAEGM- ---PPM--QA QEWDMDARRP MPFQFPPFPD RAPVFPDRMM ENSTTRP00000014861/1-655 LRGEMAEGM- ---PPM--QA QEWDMDARRP MPFQFPPFPD RAPVFPDRMM 151 200 ENSBTAP00000054300/1-683 REPQLPTAEI SLWTVVAAIQ AVERKVDAQA SQLLNLEGRT GTAEKKLADC bmy_20288T0/1-423 REPQLPTAEI SLWTVVAAIQ AVERKVDAQA SQLLNLEGRT GTAEKKLADC ENSP00000262085/1-671 REPQLPTAEI SLWTVVAAIQ AVERKVDAQA SQLLNLEGRT GTAEKKLADC BACU010917/1-684 REPQLPTAEI SLWTVVAAIQ AVERKVDAQA SQLLNLEGRT GTAEKKLADC ENSTTRP00000014861/1-655 REPQLPTAEI SLWTVVAAIQ AVERKVDAQA SQLLNLEGRT GTAEKKLADC 201 250 ENSBTAP00000054300/1-683 EKTAVEFGNH MEGKWAVLGT LLQEYGLLQR RLENMENLLR NRNFWVLRLP bmy_20288T0/1-423 EKTAVEFGNH MEGKWAVLGT LLQEYGLLQR RLENMENLLR NRNFWVLRLP ENSP00000262085/1-671 EKTAVEFGNH MESKWAVLGT LLQEYGLLQR RLENLENLLR NRNFWVLRLP BACU010917/1-684 EKTAVEFGNH MEGKWAVLGT LLQEYGLLQR RLENMENLLR NRNFWVLRLP ENSTTRP00000014861/1-655 EKTAVEFGNH MEGKWAVLGT LLQEYGLLQR RLENMENLLR NRNFWVLRLP 251 300 ENSBTAP00000054300/1-683 PGSKGEVPKV PVTFVDIAVY FSEDEWKNLD EWQKELYNNL VKENYKTLMS bmy_20288T0/1-423 PGSKGEVPKV PVTFVDIAVY FSEDEWKNLD EWQKELYNNL VKENYKTLMS ENSP00000262085/1-671 PGSKGEAPKV PVTFVDIAVY FSEDEWKNLD EWQKELYNNL VKENYKTLMS BACU010917/1-684 PGSKGEVPKV PVTFVDIAVY FSEDEWKNLD EWQKELYNNL VKENYKTLMS ENSTTRP00000014861/1-655 PGSKGEVPKV PVTFVDIAVY FSEDEWKNLD EWQKELYNNL VKENYKTLMS 301 350 ENSBTAP00000054300/1-683 LDSEGPVSKP EAPSQAEPRE EPCVWEQRDP EEREILMDPD T--------- bmy_20288T0/1-423 LDSEGPVSKP DAPPQAEPRE EPCVWEQRDP EEREILMDPD T--------- ENSP00000262085/1-671 LDAEGSVPKP DAPVQAEPRE EPCVWEQRHP EEREIPMDPE A--------- BACU010917/1-684 LDSEGPVSKP DAPPQAEPRE EPCVWEQRDP EEREILMDPD TGRLTLQGFL ENSTTRP00000014861/1-655 LDSEGPVSKP DAPPQAEPRE EPCVWEQRDP EEREILMDPD T--------- 351 400 ENSBTAP00000054300/1-683 ---------- ---------- ---------- ---------- ---------- bmy_20288T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000262085/1-671 ---------- ---------- ---------- ---------- ---------- BACU010917/1-684 LIQGRSYALR IQFPENITPG DGRREASRDL SSPEHCWART SCSSGFPIVA ENSTTRP00000014861/1-655 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000054300/1-683 ---------- ---------- ---------- ---------- --ETSSLRTS bmy_20288T0/1-423 ---------- ---------- ---------- ---------- --GAEPLVPA ENSP00000262085/1-671 ---------- ---------- ---------- ---------- --GAEPLVPA BACU010917/1-684 HRNPGPLCSS LARAVSRAPD PENVQLTIIH ANGTKRCDSL SPGAEPLVPT ENSTTRP00000014861/1-655 ---------- ---------- ---------- ---------- --GAEPLVTA 451 500 ENSBTAP00000054300/1-683 HQVTGSMRVL GDLALLTVSD QVKSGPPTVF SASSQQPSCR GPLLLLFYTW bmy_20288T0/1-423 QDAPSQVKRE EALCARGQRG LEERAIPTES ITDS--PASA QDLLS----- ENSP00000262085/1-671 QDASSQVKRE DTLCVRGQRG LEERAIPTES ITDS--PISA QDLLS----- BACU010917/1-684 QDTPSQVKRE EALCARGQRG LEERAIPTES ITDS--PASA HDLLS----- ENSTTRP00000014861/1-655 QDTSSQVKRE EALCARGQRG LEERAIPTES ITDS--PASA QDLLS----- 501 550 ENSBTAP00000054300/1-683 RAYLPKPP-- ---QKLARRQ PPPSQWSLLL PTPSIITSWI RRSQSLLPTG bmy_20288T0/1-423 RIKQEDPPCV WDQHELAERD IPTDPNS--- ---------- ---------- ENSP00000262085/1-671 RIKQEEHQCV WDQQDLADRD IPTDPNSESL ISAHDILSWI KQEEQPYPWG BACU010917/1-684 RIKQEDPPCV WDQHELAERD IPADPNSESL ISAHDILSWI KQEEQPYPWG ENSTTRP00000014861/1-655 RIKQEDPPCV WAQQELAERD IPTDPNSESL ISAHDILSWI KQEEQPYPWG 551 600 ENSBTAP00000054300/1-683 APN------- ---CDPCSLP AAPKQAGLSP PPPHNGTASP KSA----RSQ bmy_20288T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000262085/1-671 PRDS-MDGEL GLDSGPSDSL LMVKNPPPAP PQPQPQPQPP QPQLQSQPQP BACU010917/1-684 PRD------- ---------- ---------- ---------- ---------- ENSTTRP00000014861/1-655 PRDAXXXXXX XXXXXXXDSL LMVKNPPPAP PQP------- -------PPP 601 650 ENSBTAP00000054300/1-683 STLLSLAIPE SSKGGPCGDR ARIGILGAPG PSVAPGQRGA Q--PLTAHRT bmy_20288T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000262085/1-671 QSLPPI-AVA ENPGGPPSRG -----LLDDG FQVLPGERGS GEAPPGGDRS BACU010917/1-684 ---------- ---------- ---------- --SMEGELGL D--------- ENSTTRP00000014861/1-655 QSLPPLPAPP EDAGGPPSRG --GGALLDDG FPALPGERGA GGAQADGQA- 651 700 ENSBTAP00000054300/1-683 EGGGRGLHXG GGGAGTAGGG PGGGCGSCCS PGGLRRSLLL HGGGGGGGGG bmy_20288T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000262085/1-671 TGGGGGDGGG GGGGAEAGTG AGGGCGSCC- PGGLRRSLLL H--------- BACU010917/1-684 --SGPGLQTG FSPGIGS--- --GKLSPSS- R-EILRSLLL H--------- ENSTTRP00000014861/1-655 --GGGGAAGG AGGGAGA--- --GGCGSCC- PGGLRRSLLL H--------- 701 750 ENSBTAP00000054300/1-683 GARSKPYSCP ECGKSFGVRK SLIIHHRSHT KERPYECAEC EKSFNCHSGL bmy_20288T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000262085/1-671 GARSKPYSCP ECGKSFGVRK SLIIHHRSHT KERPYECAEC EKSFNCHSGL BACU010917/1-684 GARSKPYACP ECGKSFGVRK SLIIHHRSHT KERPYECAEC EKSFNCHSGL ENSTTRP00000014861/1-655 GARSKPYSCP ECGKSFGVRK SLIIHHRSHT KERPYECAEC EKSFNCHSGL 751 800 ENSBTAP00000054300/1-683 IRHQMTHRGE RPYKCSECEK TYSRKEHLQN HQRLHTGERP FQCALCGKSF bmy_20288T0/1-423 ---------- ---------- ---------- ------GERA VAA------- ENSP00000262085/1-671 IRHQMTHRGE RPYKCSECEK TYSRKEHLQN HQRLHTGERP FQCALCGKSF BACU010917/1-684 IRHQMTHRGE RPYKCSECEK TYSRKEHLQN HQRLHTGERP FQCALCGKSF ENSTTRP00000014861/1-655 IRHQMTHRGE RPYKCSECEK TYSRKEHLQN HQRLHTGERP FQCALCGKSF 801 850 ENSBTAP00000054300/1-683 IRKQNLLKHQ RIHTGERPYT CGECGKSFRY KESLKDHLRV HSAGGGGPGG bmy_20288T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000262085/1-671 IRKQNLLKHQ RIHTGERPYT CGECGKSFRY KESLKDHLRV HS-------G BACU010917/1-684 IRKQNLLKHQ RIHTGERPYT CGECGKSFRY KESLKDHLRV HS------GG ENSTTRP00000014861/1-655 IRKQNLLKHQ RIHTGERPYT CGECGKSFRY KESLKDHLRV HS------GG 851 900 ENSBTAP00000054300/1-683 GPGLGAPRPL QPPPERD bmy_20288T0/1-423 ---------- ------- ENSP00000262085/1-671 GPGPGAPRQL PPPPERD BACU010917/1-684 GPGLGAQRPL QAPPERD ENSTTRP00000014861/1-655 GPGLGAQRPL QAPPERD