KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:50 2014 Check: 00 .. Name: ENSTTRP00000001106/1-1044 Len: 1153 Check: 3581 Weight: 1.00 Name: ENSP00000268989/1-1051 Len: 1153 Check: 319 Weight: 1.00 Name: ENSBTAP00000054301/1-1094 Len: 1153 Check: 1781 Weight: 1.00 Name: bmy_00187T0/1-1047 Len: 1153 Check: 5051 Weight: 1.00 Name: BACU006964/1-982 Len: 1153 Check: 2596 Weight: 1.00 // 1 50 ENSTTRP00000001106/1-1044 ---------M GSAEDAVKEK LLWNVKKEVK QIMEEAVTRK FVHEDSSHIL ENSP00000268989/1-1051 ---------M GSAEDAVKEK LLWNVKKEVK QIMEEAVTRK FVHEDSSHII ENSBTAP00000054301/1-1094 ---------M GSAEDAVKEK LLWNVKKEVK QIMEEAVTRK FVHEDSSHIL bmy_00187T0/1-1047 MLHTGGTYIP DEREGQGRCG TAKPPQVHPG QERGGARGRI LERGQGSAAA BACU006964/1-982 ---------- ---------- ---------- --MEEAVTRK FVHEDSSHVL 51 100 ENSTTRP00000001106/1-1044 TLC--GAVEV CLLHQLRRRA AGFLRSDKMA ALFTK-GK-C SVAGEVCHK- ENSP00000268989/1-1051 ALC--GAVEA CLLHQLRRRA AGFLRSDKMA ALFTKVGKTC PVAGEICHKV ENSBTAP00000054301/1-1094 ALC--GAVEA CLLHQLRRRA AGFLRSDKMA ALFTKVGKTC PVAGEICHKV bmy_00187T0/1-1047 SLCGPGAVEA CLLHQLRRRA AGFLRSDKMA ALFTKVGKTC PVAGEVCHKV BACU006964/1-982 TLC--GAVEA CLLHQLRRRA AGFLRSDKMA ALFTKVGKTC PVAGEVCHKV 101 150 ENSTTRP00000001106/1-1044 QELQQQVEG- RKPLAGSRET QQRQGSASGK APALSLQALK HIWVRTALIE ENSP00000268989/1-1051 QELQQQAEG- RKPSGVSQEA LRRQGSASGK APALSPQALK HVWVRTALIE ENSBTAP00000054301/1-1094 QELQQQVEGS RKPLAGNQET LRRQGSASGK APALSLQALK HIWVRTALME bmy_00187T0/1-1047 QELQQQVEG- RKPLAGNQET LQRQGSASGK APALSLQALK HIWVRTALIE BACU006964/1-982 QEVQQQVEG- RKPLAGNQET LQRQGSASGK APALSLQALK HIWVRTALIE 151 200 ENSTTRP00000001106/1-1044 KVLDRVVQYL VENCSKYYEK EALLADPVFG PILASLLVGP CALEYTKLKT ENSP00000268989/1-1051 KVLDKVVQYL AENCSKYYEK EALLADPVFG PILASLLVGP CALEYTKLKT ENSBTAP00000054301/1-1094 KVLDKVVQYL VENCSKYYEK EALLADPVFG PILASLLVGP CALEYTKLKT bmy_00187T0/1-1047 KVLDRVVQYL VENCSKYYEK EALLADPVFG PILASLLVGP CALEYTKLKT BACU006964/1-982 KVLDRVVQYL VENCSKYYEK EALLADPVFG PILASLLVGP CALEYTKLKT 201 250 ENSTTRP00000001106/1-1044 ADHYWTDPSA DELVQRHRIR GPPNRQDSPA KRPALGIRKR HSSGSASEDR ENSP00000268989/1-1051 ADHYWTDPSA DELVQRHRIR GPPTRQDSPA KRPALGIRKR HSSGSASEDR ENSBTAP00000054301/1-1094 ADHYWTDPSA DELVQRHRIR GPPHRQDSPA KRPALGIRKR HSSGSASEDR bmy_00187T0/1-1047 ADHYWTDPSA DELVQRHRIR GPPNRQDSPA KRPALGIRKR HSSGSASEDR BACU006964/1-982 ADHYWTDPSA DELVQRHRIR GPPNRQDSPA KRPALGIRKR HSSGSASEDR 251 300 ENSTTRP00000001106/1-1044 LAACAREYVE SLHQNSRTRL LYGKNNVLVQ PK-DVEAVPG YLSLHQSAGS ENSP00000268989/1-1051 LAACARECVE SLHQNSRTRL LYGKNHVLVQ PKEDMEAVPG YLSLHQSAES ENSBTAP00000054301/1-1094 LAACAREYVE SLHQNSRARL LYGKNNVLVQ PKEDMEAVPG YLSLHQSAES bmy_00187T0/1-1047 LAACAREYVE SLHQNSRTRL LYGKNNVLVQ PKEDMEAVPG YLSLHQSAES BACU006964/1-982 LAACAREYVE SLHQNSRTRL LYGKNNVLVQ PKEDMEAVPG YLSLHQSAES 301 350 ENSTTRP00000001106/1-1044 LTLKWTPNQL MNGTLGDSEL EKSVYWDYAL VVPFSQIVCI HCHQQKNGGT ENSP00000268989/1-1051 LTLKWTPNQL MNGTLGDSEL EKSVYWDYAL VVPFSQVVCI HCHQQKSGGT ENSBTAP00000054301/1-1094 LTLKWTPNQL MNGTLGDSEL EKSVYWDYAL VVPFSQIVCI HCHQQKSGGT bmy_00187T0/1-1047 LTLKWTPNQL MNGTLGDSEL EKSVYWDYAL VVPFSQIVCI HCHQQKNGGT BACU006964/1-982 LTLKWTPNQL MNGTLGDSEL EKSVYWDYAL VVPFSQIVCI HCHQQKNGGT 351 400 ENSTTRP00000001106/1-1044 LVLVSQDGIQ RPPLHFPQ-G PLLSFLSCLE -GLLPRGQLE -PLWTQQGKG ENSP00000268989/1-1051 LVLVSQDGIQ RPPLHFPQGG HLLSFLSCLE NGLLPRGQLE PPLWTQQGKG ENSBTAP00000054301/1-1094 LVLVSQDGIQ RPPLHFPQGG HLLSFLSCLE NGLLPRGQLE PPLWTQQGKG bmy_00187T0/1-1047 LVLVSQDGIQ RPPLHFPQGG HLLSFLSCLE NGLLPRGQLE PPLWTQQGKG BACU006964/1-982 LVLVSQDGIQ RPPLHFPQGG HLLSFLSCLE NGLLPRGQLE PPLWTQQGKG 401 450 ENSTTRP00000001106/1-1044 KVFPRLRKRS SMRSVDVEDV GSGRATDYVF RIIYPGHRHE HITINYHHLA ENSP00000268989/1-1051 KVFPKLRKRS SIRSVDMEEM GTGRATDYVF RIIYPGHRHE HITINYHHLA ENSBTAP00000054301/1-1094 KVFPRLRKRS SLRSMDAEDV STGRATDYVF RIIYPGHRHE H--------- bmy_00187T0/1-1047 KVFPRLRKRS SMRSVDVEDV GSGRATDYVF RIIYPGHRHE HITINYHHLA BACU006964/1-982 KVFPRLRKRS SMRSVDVEDV GSGRATDYVF RIIYPGHRHE H--------- 451 500 ENSTTRP00000001106/1-1044 ASRAASVDDD EEEEDRLHAM LSMICSRNLT APNPMKDAGD MIEMQGFGPS ENSP00000268989/1-1051 ASRAASVDDD EEEEDKLHAM LSMICSRNLT APNPMKDAGD MIEMQGFGPS ENSBTAP00000054301/1-1094 ---------- ---------- ---------- ------NAGD MIEMQGFGPS bmy_00187T0/1-1047 ASRAASVDDD EEEEDKLHAM LSMICSRNLT APNPMKDAGD MIEMQGFGPS BACU006964/1-982 ---------- ---------- ---------- ------NAGD MIEMQGFGPS 501 550 ENSTTRP00000001106/1-1044 LPAWHLEPLC SQGSSCLSYS TSSSPYVSPS HCSCVPDRLP LRLLCESMKR ENSP00000268989/1-1051 LPAWHLEPLC SQGSSCLSCS SSSSPHATPS HCSCIPDRLP LRLLCESMKR ENSBTAP00000054301/1-1094 LPAWHLQPLC SQGSSCLSCS TSSSPYAPPS HCSCVPDRLP LRLLCESMKR bmy_00187T0/1-1047 LPAWHLEPLC SQGSSCLSYS TSSSPYVPPS HCSCVPDRLP LRLLCESMKR BACU006964/1-982 LPAWHLEPLC SQGSSCLSYS TSSSPYVPPS HCSCVPDRLP LRLLCESMKR 551 600 ENSTTRP00000001106/1-1044 QIVSRAFYGW LAYCRHLSTV RTHLSALVHH NIIPPARPPG ASGGLTKDMW ENSP00000268989/1-1051 QIVSRAFYGW LAHCRHLSTV RTHLSALVHH SVIPPDRPPG ASAGLTKDVW ENSBTAP00000054301/1-1094 QIVSRAFYGW LAYCRHLSTV RTHLSALVHH NIVPPARPPG ASGGLTKDVW bmy_00187T0/1-1047 QIVSRAFYGW LAYCRHLSTV RTHLSALVHH NIIPPARPPG ASGGLTKDVW BACU006964/1-982 QIMSRAFYGW LAYCRHLSTV RTHLSALVHH NIIPPARPPG ASGGLTKDVW 601 650 ENSTTRP00000001106/1-1044 SKYQKNEKNY KELELLRQVY TGGVEHEIRK DVWPFLLGHY KFGMSKKEME ENSP00000268989/1-1051 SKYQKDKKNY KELELLRQVY YGGIEHEIRK DVWPFLLGHY KFGMSKKEME ENSBTAP00000054301/1-1094 SKYQKDEKNY KELELLRQVY YGGVEHEIRQ DVWPFLLGHY KFGMSKKEME bmy_00187T0/1-1047 SKYQKDEKNY KELELLRQVY YGGVEHEIRK DVWPFLLGHY KFGMNKKEME BACU006964/1-982 SKYQKDEKNY KELELLRQVY YGGVEHEIRK DVWPFLLGHY KFGMNRKEME 651 700 ENSTTRP00000001106/1-1044 QVDTVVAARY QRVLAEWKAC EVVVRQRERE AHPATLTKFS SGSSIDSHVQ ENSP00000268989/1-1051 QVDAVVAARY QQVLAEWKAC EVVVRQRERE AHPATRTKFS SGSSIDSHVQ ENSBTAP00000054301/1-1094 QVDTVVAARY QRVLAEWKAC EVVVRQRERE AHPATLTKFS SGSSIDSHVQ bmy_00187T0/1-1047 QVDTVVAARY QRVLAEWKAC EVVVRQRERE AHPATLTKFS SGSSIDSH-- BACU006964/1-982 QVDTVVAARY QRVLAEWKAC EVVVRQRERE AHPATLTKFS SGSSIDSHVQ 701 750 ENSTTRP00000001106/1-1044 HLIHRDSTIS ND-------- ---------- ------VFVS VDDLEPPRPL ENSP00000268989/1-1051 RLIHRDSTIS ND-------- ---------- ------VFIS VDDLEPPEPQ ENSBTAP00000054301/1-1094 RLVHRDSTIS NDNVYSCSLT PINQKLSLSS ANLTDEVFVS VDDLEPPRPL bmy_00187T0/1-1047 ---------- ---------- ---------- ------VFVS VDDLEPPRPL BACU006964/1-982 RLIHRDSTIS ND-------- ---------- ------VFVS VDDLEPPRPL 751 800 ENSTTRP00000001106/1-1044 GPEDPRPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000268989/1-1051 DPEDSRPKPE QEAGPGTPGT AVVEQQHSVE FDSPDSGLPS SRNYSVASGI ENSBTAP00000054301/1-1094 GPEDPRPEAE PGAEAGPTGT AMVEQQ-SVE FDSPDSGLPS SRNYSVTSGI bmy_00187T0/1-1047 GPEDPRPEPE QGAGAGPTGT TMVEQQ-SVE FDSPDSGLPS SRNYSVASGI BACU006964/1-982 GPEDPRPEPE QRAGAGPTGT TMVEQQ-SVE FDSPDSGLPS SRNYSVASGI 801 850 ENSTTRP00000001106/1-1044 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X-XXXXXXXX XXXXXXXXXX ENSP00000268989/1-1051 QSSLDEGQSV GFEEEDGGGE EGSSGPGPAA HTLREPQDPS QEKP-QAGEL ENSBTAP00000054301/1-1094 QSSIDEGQ-M GFEEEDGAGE EGSAGMDPKA Q-VSEPQEPG QEKALPAGEL bmy_00187T0/1-1047 QSSTDEGQSM GFEEEDGGGE EGSDGLVPAA Q-VSKPQAPS QEKASRAGEL BACU006964/1-982 QSSTDEGQSM GFEEEDGGGE EGSDGLVPAA Q-VSKPQAPT QEKSSRAGEL 851 900 ENSTTRP00000001106/1-1044 XXXXXXXXXX XXXXX----- ---------- ---------- ---------- ENSP00000268989/1-1051 EAGEELAAVC AAAYT----- ---------- ---------- ---------- ENSBTAP00000054301/1-1094 EAGEELAAMC AAAYTVCARS PGIGDPGADG GMAWTVLEVG TEPLPQQAHR bmy_00187T0/1-1047 EAGEELAAVC AAAYA----- ---------- ---------- ---------- BACU006964/1-982 EAGEELAAVC AAAYA----- ---------- ---------- ---------- 901 950 ENSTTRP00000001106/1-1044 ---------- ---------- ---------- XXXXXXXXXX XXXXXXXXXX ENSP00000268989/1-1051 ---------- ---------- ---------- IELLDTVALN LHRIDKDVQR ENSBTAP00000054301/1-1094 TQCSEALGSL LSLCSFIRAS PLAPDSPLRA IELLDTVALN LHRIDKDVQR bmy_00187T0/1-1047 ---------- ---------- ---------- IELLDTVALN LHRIDKDVQR BACU006964/1-982 ---------- ---------- ---------- IELLDTVALN LHRIDKDVQR 951 1000 ENSTTRP00000001106/1-1044 XXXXXXXXXX XXXXXXXXXX XXYVWEHLDV GYVQGMCDLL APLLVVLDND ENSP00000268989/1-1051 CDRNYWYFTP PNLERLRDVM CSYVWEHLDV GYVQGMCDLL APLLVTLDND ENSBTAP00000054301/1-1094 CDRNYWYFTP PNLERLRDVM CSYVWEHLDV GYVQGMCDLL APLLVVLDND bmy_00187T0/1-1047 CDRNYWYFTP PNLERLRDIM CSYVWEHLDV GYVQGMCDLL APLLVVLDND BACU006964/1-982 CDRNYWYFTP PNLERLRDIM CSYVWEHLDV GYVQGMCDLL APLLVVLDND 1001 1050 ENSTTRP00000001106/1-1044 QLAYSCFSHL MKRMSQNFPN GGAMDSHFAN MRSLIQILDS ELFELMHQNG ENSP00000268989/1-1051 QLAYSCFSHL MKRMSQNFPN GGAMDTHFAN MRSLIQILDS ELFELMHQNG ENSBTAP00000054301/1-1094 QLAYSCFSHL MKRMSQNFPN GGAMDAHFAN MRSLIQILDS ELFELMHQNG bmy_00187T0/1-1047 QLAYSCFSHL MKRMSQNFPN GGAMDAHFAN MRSLIQILDS ELFELMHQNG BACU006964/1-982 QLAYSCFSHL MKRMSQNFPN GGAMDAHFAN MRSLIQILDS ELFELMHQNG 1051 1100 ENSTTRP00000001106/1-1044 DYTHFYFCYR WFLLDFKREL PYEDVFAVWE VIWAARHISS EHFVLFIALA ENSP00000268989/1-1051 DYTHFYFCYR WFLLDFKREL LYEDVFAVWE VIWAARHISS EHFVLFIALA ENSBTAP00000054301/1-1094 DYTHFYFCYR WFLLDFKREL PYEDVFAVWE VIWAARHISS EHFVLFIALA bmy_00187T0/1-1047 DYTHFYFCYR WFLLDFKREL PYEDVFAVWE VIWAARHISS EHFVLFIALA BACU006964/1-982 DYTHFYFCYR WFLLDFKREL PYEDVFAVWE VIWAARHISS EHFVLFIALA 1101 1150 ENSTTRP00000001106/1-1044 LVEAYREIIR DNNMDFTDII KFFNERAEHH DAQEILRIAR DLVHKVQMLI ENSP00000268989/1-1051 LVEAYREIIR DNNMDFTDII KFFNERAEHH DAQEILRIAR DLVHKVQMLI ENSBTAP00000054301/1-1094 LVEAYREIIR DNNMDFTDII KFFNERAEHH DAQEILRIAR DLVHKVQTLI bmy_00187T0/1-1047 LVEAYREIIR DNNMDFTDII KFFNERAEHH DAQEILRIAR DLVHKVQMLI BACU006964/1-982 LVEAYREIIR DNNMDFTDII KFFNERAEHH DAQEILRIAR DLVHKVQMLI 1151 1200 ENSTTRP00000001106/1-1044 ENK ENSP00000268989/1-1051 ENK ENSBTAP00000054301/1-1094 ENK bmy_00187T0/1-1047 ENK BACU006964/1-982 ENK