KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:23:52 2014 Check: 00 .. Name: ENSTTRP00000005851/1-819 Len: 1158 Check: 8754 Weight: 1.00 Name: ENSP00000383063/1-1158 Len: 1158 Check: 781 Weight: 1.00 Name: ENSBTAP00000054302/1-1156 Len: 1158 Check: 1569 Weight: 1.00 Name: bmy_13972T0/1-1156 Len: 1158 Check: 6470 Weight: 1.00 Name: BACU000083/1-1156 Len: 1158 Check: 7163 Weight: 1.00 // 1 50 ENSTTRP00000005851/1-819 ---------- ---------- ---------- ---------- ---------- ENSP00000383063/1-1158 MTHGEELGSD VHQDSIVLTY LEGLLMHQAA GGSGTAVDKK SAGHNEEDQN ENSBTAP00000054302/1-1156 MTHGEELGSD VHQDSIVLTY LEGLLMHQAA EGSGTAVDKA SAGRNEDDQN bmy_13972T0/1-1156 MTHGEELGSD VHQDSIVLTY LEGLLMHQAA EGSGTAIDRK SAGCNEEDQN BACU000083/1-1156 MTHGEELGSD VHQDSIVLTY LEGLLMHQAA EGSGTAIDRK SAGCNEEDQN 51 100 ENSTTRP00000005851/1-819 ---------- ---------- ---------- ---------- ---------- ENSP00000383063/1-1158 FNISGSAFPT CQSNGPVLNT HTYQGSGMLH LKKARLLQSS EDWNAAKRKR ENSBTAP00000054302/1-1156 FNISGSAFPT CQRNGPVLST HTYQGSGMLH LKKARLLQSS EDWNAAKRKR bmy_13972T0/1-1156 FHISGNAYPT CQSNGPVLNT HTYQGSGMLH LKKARLLQSS EDWNAAKRKR BACU000083/1-1156 FNFSGNAFPT CQSNGPVLNT HTYQGSGMLH LKKARLLQSS EDWNAAKRKR 101 150 ENSTTRP00000005851/1-819 ---------- ---------- ---------- ---------- ---------- ENSP00000383063/1-1158 LSDSIMNLNV KKEALLAGMV DSVPKGKQDS TLLASLLQSF SSRLQTVALS ENSBTAP00000054302/1-1156 LSDSIVNLNV KKEALLAGMA DSAPKGKQDS KVLASLLQSF SSRLQTVALS bmy_13972T0/1-1156 LSDSIVNLNV KKEALLAGMA DSVPKGKQDN TVLASLLQSF SSRLQTVALS BACU000083/1-1156 LSDSIVNLNV KKEALLAGMA DSVPKGKQDN TVLASLLQSF SSRLQTVALS 151 200 ENSTTRP00000005851/1-819 ---------- ---------- ---------- ---------- ---------- ENSP00000383063/1-1158 QQIRQSLKEQ GYALSHDSLK VEKDLRCYGV ASSHLKTLLK KSKVKDQKPD ENSBTAP00000054302/1-1156 QQIRQSLKEQ GYALSHNSLK VEKDLRCYGV ASSHLKTLLK KSKAKDQKPD bmy_13972T0/1-1156 QQIRQSLKEQ GYALSHNSLK VEKDLRCYGV ASSHLKTLLK KSKAKDQKPD BACU000083/1-1156 QQIRQSLKEQ GYALSHNSLK VEKDLRCYGV ASSHLKTLLK KSKAKDQKPD 201 250 ENSTTRP00000005851/1-819 ---------- ---------- ---------- ---------- ---------- ENSP00000383063/1-1158 TNLPDVTKNL IRDRFAESPH HVGQSGTKVM SEPLSCAARL QAVASMVEKR ENSBTAP00000054302/1-1156 TSIPDVTKTL IRDRFIESPH HVGQSGTKVV SEPLSCAARL QAVASMVEKR bmy_13972T0/1-1156 TSLPDVTKNL IRDRFXESPH HVGQSGTKVM SEPLSCAARL QAVASMVEKR BACU000083/1-1156 TSLPDVTKNL IRDRFVESPH HVGQSGTKVM SEPLSCAARL QAVASMVEKR 251 300 ENSTTRP00000005851/1-819 ---------- ---------- ---------- ---------- ---------- ENSP00000383063/1-1158 ASPATSPKPS VACSQLALLL SSEAHLQQYS REHALKTQNA NQAASERLAA ENSBTAP00000054302/1-1156 ASPATSPKPS VACSQLALLL SSEAHLQQYS REHALKTQNA NQAASERLAA bmy_13972T0/1-1156 ASPATSPKPS VACSQLALLL SSEAHLQQYS REHALKTQNA NQAASERLAA BACU000083/1-1156 ASPATSPKPS VACSQLALLL SSEAHLQQYS REHALKTQNA NQAASERLAA 301 350 ENSTTRP00000005851/1-819 ---------- ---------- ---------- -----LMASK ---TTFQTPM ENSP00000383063/1-1158 MARLQENGQK DVGSYQLPKG MSSHLNGQAR TSSSKLMASK SSATVFQNPM ENSBTAP00000054302/1-1156 MARLQENGQK DMGSFQLSKG ISGHLNGQAR TSSNKLMASK S--TAFQNPV bmy_13972T0/1-1156 MARLQENGQK DVGSFQFSKG MSSHLNGQAR ASSNKLMASK S--TTFQNPM BACU000083/1-1156 MARLQENGQK DVGSFQFSKG MSSHLNGQAR ASSNKLTASK S--TTFQNPM 351 400 ENSTTRP00000005851/1-819 GIVPSSPKNA GYKNSLERSN AKQAANNSLL LHLLKSQTIP KPMNGHSHSE ENSP00000383063/1-1158 GIIPSSPKNA GYKNSLERNN IKQAANNSLL LHLLKSQTIP KPMNGHSHSE ENSBTAP00000054302/1-1156 GIVPSSPKNA GYKNSLERNN IKQAANNSLL LHLLKSQTIP KPMNGHSHSE bmy_13972T0/1-1156 GIVPSPPKNA GYKNSLERSN AKQAANNSLL LHLLKSQTTP KPMNGHNQSE BACU000083/1-1156 GIVPSPPKNA GYKNSLERSN AKQAANNSLL LHLLKSQTTP KPMNGHNQSE 401 450 ENSTTRP00000005851/1-819 KGSLFEESST PTTIDEYSDN NPSFTDDSSG DESSYSNCVP IDLSCKHRIE ENSP00000383063/1-1158 RGSIFEESST PTTIDEYSDN NPSFTDDSSG DESSYSNCVP IDLSCKHRTE ENSBTAP00000054302/1-1156 RGSIFEESST PTTIDDYSDP NPSFTDESSG DESSYFNCVP IDLSCKHRIE bmy_13972T0/1-1156 KGSLFEEGST PTTIDEYSDN NPSFTDDSSG DESSYSNCVP IDLSCKHRIE BACU000083/1-1156 KGSLFEEGST PTTIDEYSDN NPSFTDDSSG DESSYSNCVP IDLSCKHRIE 451 500 ENSTTRP00000005851/1-819 KPEPDQPVSL DNLTQSLLNT WDPKVPEVDI KEDQDTSKNS KLNSHQKVTL ENSP00000383063/1-1158 KSESDQPVSL DNFTQSLLNT WDPKVPDVDI KEDQDTSKNS KLNSHQKVTL ENSBTAP00000054302/1-1156 KPEPDQPVSL DNLTQSLLNT WDPKVPEVDV KEDQDTSKNS KLNSHQKVTL bmy_13972T0/1-1156 KPEPDRPVSL DNLTQSLLNT WDPKVPEVDI KEDQDTSKNS KLNAHQKVTL BACU000083/1-1156 KPEPDRPVSL DNLTQSLLNT WDPKVPEVDI KEDQDTSKNS KLNAHQKVTL 501 550 ENSTTRP00000005851/1-819 LQLLLGHKNE ENVERNNSPQ EPHGDGTKFS THNYTRTSVI ESPSTSRTTP ENSP00000383063/1-1158 LQLLLGHKNE ENVEKNTSPQ GVHNDVSKFN TQNYARTSVI ESPSTNRTTP ENSBTAP00000054302/1-1156 LQLLLGHKNE ENMERNGSPQ EAHSDETKFS TQNYTRTSVI ESPSTNRTTP bmy_13972T0/1-1156 LQLLLGHKNE ENVERNSSPQ EPHSDGTKFS THNYTRTSVI ESPSTSRTTP BACU000083/1-1156 LQLLLGHKNE ENVERNSSPQ EPHSDGTKFS THNYTRTSVI ESPSTSRTPP 551 600 ENSTTRP00000005851/1-819 VSTPPLLAST KAESPINLSQ HSLVIKWNSP LYACGPQSEK PTNTASNHLM ENSP00000383063/1-1158 VSTPPLLTSS KAGSPINLSQ HSLVIKWNSP PYVCSTQSEK LTNTASNHSM ENSBTAP00000054302/1-1156 VSTPPLLAST KADSPINLSQ HSLVIKWNSP PYACGPQPEK PANTASNHLM bmy_13972T0/1-1156 VSTPPLLAST KAESPINLSQ HSLVIKWNSP PYACGPQSEK PANTASNHLM BACU000083/1-1156 VSTPPLLAST KAESPINLSQ HSLVIKWNSP PYACGPQSEK PANTASNHLM 601 650 ENSTTRP00000005851/1-819 DLTKSKESQG EKPVQNEGTQ NSATFSASKL LQNLAQCGMQ SSVSGEEQRP ENSP00000383063/1-1158 DLTKSKDPPG EKPAQNEGAQ NSATFSASKL LQNLAQCGMQ SSMSVEEQRP ENSBTAP00000054302/1-1156 DLTKSKESQG EKAIHNEGAQ NSATFSASKL LQNLAQCGMQ SSVSGEEQRP bmy_13972T0/1-1156 DLTKSKESQG EKPVQNEGTQ NSATFSASKL LQNLAQCGMQ SSVSGEEQRP BACU000083/1-1156 DLTKSKESQG EKPVQTEGTQ NSATFSASKL LQNLAQCGMQ SSVSGEEQRP 651 700 ENSTTRP00000005851/1-819 SKQLLSVNTE KPTGMTDRLN SPLLSNKTNA VEENKAFSSH ATGPEPGLSG ENSP00000383063/1-1158 SKQLLTGNTD KPIGMIDRLN SPLLSNKTNA VEENKAFSSQ PTGPEPGLSG ENSBTAP00000054302/1-1156 SKQLLSVNTD KPPGMIDRLN SPLLANKTSA VEEKKAFGSH TIGPEPGLSG bmy_13972T0/1-1156 SKQLLSVNTE KPTGMTDRLN SPLLSNKTNA VEENKAFGSH ATGPEPGLSG BACU000083/1-1156 SKQLLSVNTE KPTGMTDRLN SPLLSNKTNA VEENKAFGSH ATGPEPGLSG 701 750 ENSTTRP00000005851/1-819 SEIEN-LERR TVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000383063/1-1158 SEIENLLERR TVLQLLLGNP NKGKSEKKEK TPLRDESTQE HSERALSEQI ENSBTAP00000054302/1-1156 SEIENLLERR TVLQLLLGNP NKGKTEKKEK MPLRDESTQE HTDRALSEQI bmy_13972T0/1-1156 SEIENLLERR TVLQLLLGNP NKGKPEKKEK MPLRDESTQE HTDRALSEQI BACU000083/1-1156 SEIENLLERR TVLQLLLGNP NKGKPEKREK MPLRDESTQE HTDRALSEQI 751 800 ENSTTRP00000005851/1-819 XXXXIKSRLS DDLHTHIPSA AVRPDDQGAP VLGEAHPLQG STAVLPASED ENSP00000383063/1-1158 LMVKIKSEPC DDLQIPNTNV HLSHDAKSAP FLGMAPAVQR SAPALPVSED ENSBTAP00000054302/1-1156 LMVKIKSEPC DDLHPHATGT HLSHEAPGAP FLGMAPPMQR SAPALPTSED bmy_13972T0/1-1156 LMVKIKSEPC DDLHTHTTNV PLSHDAQGAP FLGVAPALPG STAVLPASED BACU000083/1-1156 LMVKIKSEPC DDLHTRTTNV PLSHGAQGAP FSGVAPALPG STAVLPASED 801 850 ENSTTRP00000005851/1-819 FKSEPVSPQD FSFSKNGLLS RLLRQNQESH PADDLESSHR NSELTLVDSK ENSP00000383063/1-1158 FKSEPVSPQD FSFSKNGLLS RLLRQNQDSY LADDSDRSHR NNEMALLESK ENSBTAP00000054302/1-1156 LKPEPGSPQD FSFSKNGLLS RLLRQNQDSH LADELDSSHR NSELTLVESK bmy_13972T0/1-1156 FKSEPVSPQD FSFSKNGLLS RLLRQNQESH LADDLDSSHR NSELTLLESK BACU000083/1-1156 FKSEPVSPQD FSFSKNGLLS RLLRQNQESH LADDLDSSHR NSELTLLESK 851 900 ENSTTRP00000005851/1-819 NLCMVPKKRK LHTEPLENPF KKMRNNIVDA ANSPSAPKVL YGSLLNQQEL ENSP00000383063/1-1158 NLCMVPKKRK LYTEPLENPF KKMKNNIVDA ANNHSAPEVL YGSLLNQEEL ENSBTAP00000054302/1-1156 NLCMVPKKRK LYTEPLENPF KKMKNNIVDA ANSHSAPEVL YGSLLNQQEL bmy_13972T0/1-1156 NLCMVPKKRK LHTEPLENPF KKMKNNIVDA ANSHSAPKVL YGSLLNQQEL BACU000083/1-1156 NLCMVPKKRK LHTELLENPF KKMKNNIVDA ANSHSAPKML YGSLLNQQEL 901 950 ENSTTRP00000005851/1-819 KLSRNDLEFK YPASHGSASD SEHRNWARES KSFNVLKQLL LSENCVRDLS ENSP00000383063/1-1158 KFSRNDLEFK YPAGHGSASE SEHRSWARES KSFNVLKQLL LSENCVRDLS ENSBTAP00000054302/1-1156 KLSRSDLEFK HPASHGSASE SEPRNWTRES KSFNVLKQLL LSENCVRDLS bmy_13972T0/1-1156 KLSRNDLEFK YPASHGSASE SEPRNWARES KSFNVLKQLL LSENCVRDLS BACU000083/1-1156 KLSRNELEFK YPARHGSASE SEHRNWARES KSFNVLKQLL LSENCVRDLS 951 1000 ENSTTRP00000005851/1-819 QHRSSSVVDS KKKGHRSTVT SSKPDFSISS LNGLMYSAAQ PNSCMGHRTF ENSP00000383063/1-1158 PHRSNSVADS KKKGHKNNVT NSKPEFSISS LNGLMYSSTQ PSSCMDNRTF ENSBTAP00000054302/1-1156 QHRSNSVADS KKKGHRNSVT NSKPEFSIAS LNGLMCGATQ PGSCMVSRTF bmy_13972T0/1-1156 QHRSNSVVDS KKKGHRNSVT NSKPEFSVSS LNGLMYSAAQ PSSCMGHRTF BACU000083/1-1156 QHRSNSVVDS KKKGHRNSVT NSKPEFSVSS LNGLMYSAAQ PSSCMGHRTF 1001 1050 ENSTTRP00000005851/1-819 PYPGVGKPPV SPPFPEHLGC AGSRPESGLV NGCSVPSEKG PIKWVXXXXX ENSP00000383063/1-1158 SYPGVVKTPV SPTFPEHLGC AGSRPESGLL NGCSMPSEKG PIKWVITDAE ENSBTAP00000054302/1-1156 PYPGVGKAPR SPPFPEHLGC TGSRPEAGLV NGCSMPSEKG PIKWVITDVD bmy_13972T0/1-1156 PYPGVGKPPV SPPFPEHLGC AGSRPEPGLA NGCSVPSEKG PIKWVITDVD BACU000083/1-1156 PYPGVGKPPV SPPFPEHLGC AGSRPEPGLA NGCSVPSEKG PIKWVITDVD 1051 1100 ENSTTRP00000005851/1-819 XXXXXXXXXX XXXXXXXXXX XXXXGGNSVT SRETQDKDIW REPSSAESIS ENSP00000383063/1-1158 KNEYEKDSPR LTKTNPILYY MLQKGGNSVT SRETQDKDIW REASSAESVS ENSBTAP00000054302/1-1156 KNEYEKDSPR LTKTNPILYY MLQKGGSSVT SRETQDRDMW REPSSAESIS bmy_13972T0/1-1156 KSEYEKDSPR LTKTNPILYY MLQKGGNSVT SRETQDKDIW REPSSAESIS BACU000083/1-1156 KSEYEKDSPR LTKTNPILYY MLQKGGNSVT SGETQDKDIW REPSSAESIS 1101 1150 ENSTTRP00000005851/1-819 QVTIKEELLP AAETKASFFN LRSTYNSHMG NNASRPHSAN GEVYGLLGNV ENSP00000383063/1-1158 QVTAKEELLP TAETKASFFN LRSPYNSHMG NNASRPHSAN GEVYGLLGSV ENSBTAP00000054302/1-1156 QVTIKEELLP PAETKASFFN LRSTYNSHMG NNASRPHSAN GEVYGLLGNM bmy_13972T0/1-1156 QVTIKEELLP AADTKASFFN LRSTYNSHMG NNASRPHSAN GEVYGLLGNM BACU000083/1-1156 QVTIKEELLP AAETKASFFN LRSTYNSHMG SNASRPHSAN GEVYGLLGNM 1151 1200 ENSTTRP00000005851/1-819 LTIKKESE ENSP00000383063/1-1158 LTIKKESE ENSBTAP00000054302/1-1156 LTIKKESE bmy_13972T0/1-1156 LTIKKESE BACU000083/1-1156 LTIKKESE