KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:54 2014 Check: 00 .. Name: ENSP00000360645/1-699 Len: 717 Check: 533 Weight: 1.00 Name: ENSBTAP00000054326/1-656 Len: 717 Check: 2748 Weight: 1.00 Name: bmy_14838T0/1-492 Len: 717 Check: 674 Weight: 1.00 Name: BACU018209/1-244 Len: 717 Check: 5267 Weight: 1.00 // 1 50 ENSP00000360645/1-699 --------MA ACEGRRSGAL G--------- SSQSDFLTPP VGGAPWAVAT ENSBTAP00000054326/1-656 ---------- ---------- ---------- ---------- ---------- bmy_14838T0/1-492 QRRIGSERWA GSGRRRDGRL PASDLLVSRP SSEPGLLTTP EGEAPRPAAA BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000360645/1-699 TVVMYPPPPP PPHRDFISVT LSFGENYDNS KSWRRRSCWR KWKQLSRLQR ENSBTAP00000054326/1-656 ----MYPPPA PARRDFISVT LSPGRSYDGG QGLRRRSCWR KWKQLSRLQR bmy_14838T0/1-492 AAVMYPPPPV PPRRDFISVT LSPGRSYDGV QGLRRRSFWR KWKQLSRLQR BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000360645/1-699 NMILFLLAFL LFCGLLFYIN LADHWKALAF RLEEEQKMRP EIAGLKPANP ENSBTAP00000054326/1-656 TVVLFLLVVV MLFGLLSYVH VADEWTAVDS RSAAAGQMR- ------PANP bmy_14838T0/1-492 NVVLFLLAFL MLCGLLSYIS VADEWKAVGS RSAEGPKMR- ------PANP BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000360645/1-699 PVLPAPQKAD TDPENLPEIS SQKTQRHIQR GPPHLQIRPP SQDLKDGTQE ENSBTAP00000054326/1-656 PVLPAPQKAA ENPEAVAGLS PQKPQRHFRR GPPNLQIRAP DGDPQERRQD bmy_14838T0/1-492 LVLPAPRRAA ENPETFAGAS PQKPPRHFRR GPPNLQIRAP DGDAKDRRQD BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000360645/1-699 EATKRQEAPV DPRPEGDPQR TVISWRGAVI EPEQGTELPS RRAEVPTKPP ENSBTAP00000054326/1-656 RAQRRAEVVG EAGWGAEAQR DGLRWRGAGT KLEQGPRHPP KKAEFFGWPF bmy_14838T0/1-492 EAQRRAEAVG ETPREDDAQG SRVSRRGTGT EPEQGTQLPL RKAEAPARPS BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000360645/1-699 LPPA-RTQGT PVHLNYRQKG VIDVFLHAWK GYRKFAWGHD ELKPVSRSFS ENSBTAP00000054326/1-656 QQQALRIRAS RTPQNERQKA VVDAFLHAWA GYRKFAWGHD ELKPLTRSFS bmy_14838T0/1-492 -PQALRMRNS PASQNERQKA VVAAFRHAWA GYRKFAWGHD ELKPVSKSFS BACU018209/1-244 ------MRNS PASQNERQKA VVAAFRHAWA GYRKFAWGHD ELKPVSKSFS 301 350 ENSP00000360645/1-699 EWFGLGLTLI DALDTMWILG LRKEFEEARK WVSKKLHFEK DVDVNLFEST ENSBTAP00000054326/1-656 EWFGLGLTLI DALDTMWILG LKKEFQEARK WVSKKLRFRK NVDVNLFEST bmy_14838T0/1-492 EWFGLGLTLI DALDTMWILG LKKEFEEARK WVSQRLLFQK NVDVNLFEST BACU018209/1-244 EWFGLGLTLI DALDTMWILG LKKEFEEARK WVSQRLLFQK NVDVNLFEST 351 400 ENSP00000360645/1-699 IRILGGLLSA YHLSGDSLFL RKAEDFGNRL MPAFRTPSKI PYSDVNIGTG ENSBTAP00000054326/1-656 IRILGGLLSA FHLSGDILFL KKAEDFGNRL MPAFRTPSKI PYSMVNIGTG bmy_14838T0/1-492 IRILGGLLSA FHVSGDVLFL KKAEDFGNRL MPAFQTPSKI PYSDVNIGTG BACU018209/1-244 IRILGGLLSA FHLSGDVLFL KKAEDFGNRL MPAFQTPSKI PYSDVNIGTG 401 450 ENSP00000360645/1-699 VAHPPRWTSD STVAEVTSIQ LEFRELSRLT GDKKFQEAVE KVTQHIHGLS ENSBTAP00000054326/1-656 VAHPPRWTSD STVAEVTSIQ LEFRELSRLT GDKKFQEAAE EVTRRVHALH bmy_14838T0/1-492 VAHPPRWTSD STVAEVTSIQ LEFRELSRLT GVKKFQEAVE EVTRRVHSLR BACU018209/1-244 VAHPPRWTSD STVAEVTSIQ LEFRELSRLT GVKKFQEAVE EVTRCVHSLR 451 500 ENSP00000360645/1-699 GKKDGLVPMF INTHSGLFTH LGVFTLGARA DSYYEYLLKQ WIQGGKQETQ ENSBTAP00000054326/1-656 GKLDGLVPMF INTNSGSFTH LGMFTLGARA DSYYEYLLKQ WIQGGKKERQ bmy_14838T0/1-492 GKKDGLVPMF INTNSGLFTH LGVFTLGARA DSYYEYLLKQ WIQGGKKETQ BACU018209/1-244 GKKDGLVPMF INTNSGLFTH LGVFTLGARA DSYYEYLLKQ WIQGGKKETQ 501 550 ENSP00000360645/1-699 LLEDYVEAIE GVRTHLLRHS EPSKLTFVGE LAHGRFSAKM DHLVCFLPGT ENSBTAP00000054326/1-656 LLEDYLEAVD GIRKHLLARS EPRKLTFVGE LNHGRFSAKM DHLVCFLPGT bmy_14838T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000360645/1-699 LALGVYHGLP ASHMELAQEL METCYQMNRQ METGLSPEIV HFNLYPQPGR ENSBTAP00000054326/1-656 LALGAHHGLP AEHMELAQAL MDTCYQMYRQ METGLSPETA HFNLHHTKIL bmy_14838T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000360645/1-699 RDVEVKPADR HNLLRPETVE SLFYLYRVTG DRKYQDWGWE ILQSFSRFTR ENSBTAP00000054326/1-656 KDVQVKAADR HNLLRPETVE SLFYLYRLTG DRKYQDWGWE ILHSFNTYTR bmy_14838T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000360645/1-699 VPSGGYSSIN NVQDPQKPEP RDKMESFFLG ETLKYLFLLF SDDPNLLSLD ENSBTAP00000054326/1-656 VPSGGYSSIS NVQDPRHPQP RDKMESFFLG ETLKYLYLLF SDDPDLLSLD bmy_14838T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU018209/1-244 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000360645/1-699 AYVFNTEAHP LPIWTPA ENSBTAP00000054326/1-656 TYVFNTEAHP LPIWAPS bmy_14838T0/1-492 ---------- ------- BACU018209/1-244 ---------- -------