KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:55 2014 Check: 00 .. Name: ENSBTAP00000054349/1-346 Len: 1038 Check: 9852 Weight: 1.00 Name: ENSTTRP00000011328/1-305 Len: 1038 Check: 9862 Weight: 1.00 Name: BACU005067/1-996 Len: 1038 Check: 4702 Weight: 1.00 Name: bmy_17982T0/1-443 Len: 1038 Check: 4754 Weight: 1.00 // 1 50 ENSBTAP00000054349/1-346 ---------- ---------- ---LLATVVL LSMVLDSAWL LTQEQQD--L ENSTTRP00000011328/1-305 ---------- ---------- -LCALVMAVL LSMLLVPSLF LTQDQWD--L BACU005067/1-996 ---------- ---------- ------MAAL LSTLPVPSFL LTQEHRD--L bmy_17982T0/1-443 MWERQAAAWR NAALARPSGS SMCALAMAAL LSMLLAPSFL LSQEHRNKHL 51 100 ENSBTAP00000054349/1-346 PTVKPNASLN VKFDPQTTKL TWDCRENASS GECVLILGSR ARLDPEQVKD ENSTTRP00000011328/1-305 PTVEQNSSLN MKFDPKTTKL TWDCQENATY GECVLIHKEK GQIK-KKXXX BACU005067/1-996 PTVERNSSLN VKFDPKMTKL TWDCQENATY GECVLIHKEK GQIK-KKVKD bmy_17982T0/1-443 PTVEQNSSLN VKFDPKTTKL TWDCQENATY GECVLIHKEK GQIK-KKVKD 101 150 ENSBTAP00000054349/1-346 SECQCTFQDY SLHGGVTLTV EVHVNQRRLS EMLVYTNPGR EGTAAQNFSC ENSTTRP00000011328/1-305 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG EGTAAQNFSC BACU005067/1-996 KECQCTFQDC SLHGGVTLTV EVNINQRRIS ETLVYPNPGG EGTAAQNFSC bmy_17982T0/1-443 KECQCTFQDC SLHGGVTLTV EVNINQRRIS ETLVYPNPGG EGTAAQNFSC 151 200 ENSBTAP00000054349/1-346 VIYDADFMNC SWAKGRAAPD DVQYFLYIR- SKKRIERECP RYLKDSGTHV ENSTTRP00000011328/1-305 FIYNADFMNC TWAKGQAAPN DVQYFLYIRD SKKKIERECP HYLKDSGTHV BACU005067/1-996 LIYDVDFMNC TWAKGQAAPN DVQYFLYIRD SKKKIERECP RYLKDSGTHV bmy_17982T0/1-443 LIYNADFMNC TWAKGQAAPN DVQYFLYIRD SKKKIERECP RYLKDSGTHV 201 250 ENSBTAP00000054349/1-346 GCHLQDLSGL TSYNYFLVNG TSQETGIQFF DSVLLLKEIE QYNPPDNITV ENSTTRP00000011328/1-305 GCHLQDLSGL TSYSYFLVNG TSQEAGIQFF DSVLLLKEIE QYNPPNNITV BACU005067/1-996 GCHLQDLSGL TSYSYFLVNG TSQETGIQFF DSVLLLKEIE QYNPPNNITV bmy_17982T0/1-443 GCHLQDLSGL TSYSYFLVNG TSQETGIQFF DSVLLLKEIE QYNPPNHITA 251 300 ENSBTAP00000054349/1-346 QCNESHCLIR WEKPRTRQPW PNREFQYQLD IQRRRDTTSG RSQLIVVFGD ENSTTRP00000011328/1-305 HCNESHCFIR WEKPRTRKTL SIREFQYQLD IQRQ------ ----IVVSGD BACU005067/1-996 YCNESHCFIR WEKPRTRKTQ SIREFQYQLD IQRQ------ ----IVVSGD bmy_17982T0/1-443 HCNESHCFIQ WEKPRTRKTL SIREFQYQLD IQRQSNTGSS RNQLIVVSGD 301 350 ENSBTAP00000054349/1-346 SGNRYNFPKP GSKAKHTVKI RTADARKAHW GAWSQPVEFG SEETGSSLVH ENSTTRP00000011328/1-305 SGNKYSFPRP GFRAKHTVKI RTADARKAHW GAWSQPTEF- ---------- BACU005067/1-996 SGNKYSFPRL GFRAKHTVKI RTADARKARW GAWSQPAEFG SAEPESSLVH bmy_17982T0/1-443 SGNKYSFPRL GFRAKHTVKI RTADARKAHW GAWSQPAE-- ---------- 351 400 ENSBTAP00000054349/1-346 IYVLVVLGTL VCGLTLGCLF KR-------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 IYLLVVLGTL VCGLTVSCLF KRFLGTHRLF PPIPRIKDKL NDNPQIDHQ- bmy_17982T0/1-443 ---------- ---------- --FLGTHRLF PPIPQIKDKL NDNHQIDHQV 401 450 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 --GWMHDAQS SSQPVKSHLQ PCGSRKTTPT SAHYTTLYNA GLHGAAALTV bmy_17982T0/1-443 HMGW------ ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 NAASDGHVFQ DVLPFHNPGD VAPCGPLTFP MVTRIRVAGG ALGPVGTTSS bmy_17982T0/1-443 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 GVPPVLSLGD RASEFHIPAP EDGASGNHTL GTPVRHQVKL FDVESVSRLH bmy_17982T0/1-443 ---------- -------GAN QDGEEGT--- GTP------- ---------- 551 600 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 LFSEKYNPPA NIRTEYHGSY YIIRWDNPEI RFSMSKNSVL CYELDIQRKV bmy_17982T0/1-443 ---------- ---------- ---------- ------ESQL C--------- 601 650 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 FQRGGDKNEY RMPDSAVMGE HTVRMRVKRV SCKIWSEWRS TQHFAGAHPP bmy_17982T0/1-443 ---------- ---------- ---------- ---------- --------PP 651 700 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 VGAALAMAFV WLAVFLVAFL VPVSGLLPLD HDSYPIDVSD PDPPIKNLRM bmy_17982T0/1-443 KGVHRT---- WL-------- ---------- ---------- ---------- 701 750 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 EPERKRLTWD LHGNVSEIMC FINSKAFTKA WKSTYCSIPH LSCQATNYSI bmy_17982T0/1-443 -PSRVLLTGL LQGSGTGVL- ---------- ---------P ASCVCGN--- 751 800 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 MVTKGQPFST WIQYPSQEGN PRAAAENLTC WVHDVDFLTC SWAVGREAPR bmy_17982T0/1-443 ---------- WVGGEGGEGE K--------- ---------- ---------- 801 850 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 DVQYSLYLEN LDSYEKWPCS QYTADEQGTN VQCRFHNISV LSKDQTRFLV bmy_17982T0/1-443 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 NGTSSDSKIP CSETSDKLAK IEVLAAPNVT SRWCNQSYLF MQWQVKSHLN bmy_17982T0/1-443 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 HDLKYELKMQ KIYKAFLELN NPGTYTVRVR ARDATFSHYK PWGPWSVPQH bmy_17982T0/1-443 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000054349/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- ---------- ---------- BACU005067/1-996 FVCEDEEGAR LPVWLTSLLI ALGTLLIAVG FVLLFCRFSV MQKLFPPIPH bmy_17982T0/1-443 ---EDGEGER ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000054349/1-346 ---------- ---------- ---------- -------- ENSTTRP00000011328/1-305 ---------- ---------- ---------- -------- BACU005067/1-996 MKDRINGKLQ NGRTMTWDPD QDSQEECPVA EVQVLGET bmy_17982T0/1-443 ---------- ---------- ---------- ------ER