KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:04 2014 Check: 00 .. Name: ENSBTAP00000054397/1-473 Len: 565 Check: 4388 Weight: 1.00 Name: ENSP00000043402/1-473 Len: 565 Check: 4661 Weight: 1.00 Name: bmy_02434T0/1-564 Len: 565 Check: 8344 Weight: 1.00 Name: BACU017085/1-475 Len: 565 Check: 6787 Weight: 1.00 Name: ENSTTRP00000007709/1-481 Len: 565 Check: 2685 Weight: 1.00 // 1 50 ENSBTAP00000054397/1-473 --PTSPLPAG SQLLAWVLWL QAWRVAAPCP GACVCYSEPK VTTSCPQQGL ENSP00000043402/1-473 --MKRASAGG SRLLAWVLWL QAWQVAAPCP GACVCYNEPK VTTSCPQQGL bmy_02434T0/1-564 MSMTGGRTEG SQLLAWVLWL QAWSVAAPCP GACVCYNEPK VTTSCPQQGL BACU017085/1-475 MCPESLENSG SQLLAWVLWL QAWSVAAPCP GACVCYNEPK VTTSCPQQGL ENSTTRP00000007709/1-481 --MKRASAGG SQLLAWVLWL QAWSVAAPCP GACVCYNEPK VTTSCPQQGL 51 100 ENSBTAP00000054397/1-473 QAVPADIPAA SQRVFLHGNR IAYVPAASFR ACRNLTILWL HSNALAHIDA ENSP00000043402/1-473 QAVPVGIPAA SQRIFLHGNR ISHVPAASFR ACRNLTILWL HSNVLARIDA bmy_02434T0/1-564 QAVPADIPAA SQRVFLHGNR ITYVPAAGFH ACRNLTILWL HSNALAHIDA BACU017085/1-475 QAVPADIPAA SQRVFLHGNR ITYVPAASFH ACRNLTILWL HSNALAHIDS ENSTTRP00000007709/1-481 QAVPADIPAA SQRVFLHGNR ITYVPAASFH ACRNLTILWL HSNALAHIDA 101 150 ENSBTAP00000054397/1-473 AAFSGLALLE QLDLSDNAQL RAVDPATFRG LGRLHTLHLD RCGLRELGPG ENSP00000043402/1-473 AAFTGLALLE QLDLSDNAQL RSVDPATFHG LGRLHTLHLD RCGLQELGPG bmy_02434T0/1-564 AAFAGLALLE QLDLSDNAQL HAVDPATFQG LSRLHTLHLD RCGLQELGPG BACU017085/1-475 AAFAGLALLE QLDLSDNAQL HAVDPATFQG LSRLHTLHLE RCGLQELGPG ENSTTRP00000007709/1-481 AAFAGLALLE QLDLSDNAQL HAVDPATFRG LSRLHTLHLD RCGLQELGPG 151 200 ENSBTAP00000054397/1-473 LFRGLAALQY LYLQDNGLQA LPDDAFSDLG NLTHLFLHGN HIPSVPERAF ENSP00000043402/1-473 LFRGLAALQY LYLQDNALQA LPDDTFRDLG NLTHLFLHGN RISSVPERAF bmy_02434T0/1-564 LFRGLAALQY LYLQDNGLQA LPDDAFRDLG NLTHLFLHGN RIPSVPERAF BACU017085/1-475 LFRGLAALQY LYLQDNGLQA LPDDAFRDLG NLTHLFLHGN RIPSVPERAF ENSTTRP00000007709/1-481 LFRGLAALQY LYLQDNGLQA LPDDAFRDLG NLTHLFLHGN RISSVPERAF 201 250 ENSBTAP00000054397/1-473 RGLHSLDRLL LHQNRVARVH PHAFRDLGRL MTLYLFANNL SALSAEALAP ENSP00000043402/1-473 RGLHSLDRLL LHQNRVAHVH PHAFRDLGRL MTLYLFANNL SALPTEALAP bmy_02434T0/1-564 RGLHSLDRLL LHQNRVARVH PHAFRDLGRL MTLYLFANNL SALPAEALAP BACU017085/1-475 RGLHSLDRLL LHQNRVARVH PHAFRDLGRL MTLYLFANNL SALPAEALAP ENSTTRP00000007709/1-481 RGLHSLDRLL LHQNRVARVH PHAFRDLGRL MTLYLFANNL SALPAEALAP 251 300 ENSBTAP00000054397/1-473 LRSLQYLRLN DNPWVCDCRA RPLWAWLQQF RGSSSELPCS LPARLA-GRD ENSP00000043402/1-473 LRALQYLRLN DNPWVCDCRA RPLWAWLQKF RGSSSEVPCS LPQRLA-GRD bmy_02434T0/1-564 LRALQYLRLN DNPWVCDCRA RPLWAWLQQF RGSSSELPCS LPPRLA-GRD BACU017085/1-475 LRALQYLRLN DNPWVCDCRA RPLWAWLQQF RGSSSELPCS LPPSLAXXXX ENSTTRP00000007709/1-481 LRALQYLRLN DNPWVCDCRA RPLWAWLQQF RGSSSELPCS LPPRLA-GRD 301 350 ENSBTAP00000054397/1-473 LKRLAATDLE GCAVATLPAP PIWTGGPVHE EPLGLPKCCQ PDAVDKASVL ENSP00000043402/1-473 LKRLAANDLQ GCAVATGPYH PIWTGRATDE EPLGLPKCCQ PDAADKASVL bmy_02434T0/1-564 LKRLATADLE GCAVAARPSR PFWTGGPADE ELLGLPKCCQ PDAADKASVL BACU017085/1-475 XXXXXXXXXX GGAGAARPSR PFWTGGPADE GLLGLPKCCQ PDAADKASVL ENSTTRP00000007709/1-481 LKRLATADLE GCAVAARPSR PFWTGGPADE ELLGLPKCCQ PDAEDKASVL 351 400 ENSBTAP00000054397/1-473 EAGRPASAGN ALKGRVPPGD SAPGNRSGPR HINDSPFGTL PGSAEPPLTA ENSP00000043402/1-473 EPGRPASAGN ALKGRVPPGD SPPGNGSGPR HINDSPFGTL PGSAEPPLTA bmy_02434T0/1-564 EAGSPASAGN ALKGRVPSGD SPPGNGSGPR HINDSPFGTL PGSAEPPLTA BACU017085/1-475 EAGSPASAGN ALKGRVPSGD SPPGNGSGPR HINDSPFGTL PGSAEPPLTA ENSTTRP00000007709/1-481 EAGSPASAGN ALKGRVPSGD SPPGNGSGPR HINDSPFGTL PGSAEPPLTA 401 450 ENSBTAP00000054397/1-473 VQPEGSQPPG SPNTGPRRRP GCSRKNRTRS QCRLGQAGSG G---GGSGAV ENSP00000043402/1-473 VRPEGSEPPG FPTSGPRRRP GCSRKNRTRS HCRLGQAGSG G---GGTGDS bmy_02434T0/1-564 VQPEGSQPPE PPTTGPRRRP GCSRKNRTRS QCRLGQAGGG GTLGPGPPGT BACU017085/1-475 VQPEGSQPPE PPTTGPRRRP GCSRKNRTRS QCRLGQAGGG X--------- ENSTTRP00000007709/1-481 VQPEGSQPPE PPTMGPRRRP GCSRKNRTRS QCRLGQAGGG GAGAGGAGGV 451 500 ENSBTAP00000054397/1-473 EGS--GTPS- ---------- ------GL-- ACSLVPL--- ---------- ENSP00000043402/1-473 EGS--GALP- ---------- ------SL-- TCSLTPL--- ---------- bmy_02434T0/1-564 PCVSPGSLPL CTVDTVEGGE HETGPSGLET EADLAPQSTA ASWKEDTLGR BACU017085/1-475 EGS--GALP- ---------- ------GL-- ACSLAPL--- ---------- ENSTTRP00000007709/1-481 EGS--GALP- ---------- ------GL-- ACSLAPL--- ---------- 501 550 ENSBTAP00000054397/1-473 ---------- ---------- -ALAPVLW-- ---------- -TVLGRC--- ENSP00000043402/1-473 ---------- ---------- -GLALVLW-- ---------- -TVLGPC--- bmy_02434T0/1-564 DKASERHPHS LRRRGEGSHA VESSLVSWET SPKQGWEVTE DTVSPPPLGT BACU017085/1-475 ---------- ------GLIP LGLALVLW-- ---------- -TVLGPC--- ENSTTRP00000007709/1-481 ---------- ------GLVP LGLALVLW-- ---------- -TVLGPC--- 551 600 ENSBTAP00000054397/1-473 ---------- ----- ENSP00000043402/1-473 ---------- ----- bmy_02434T0/1-564 LPEAADNIWQ QNRVR BACU017085/1-475 ---------- ----- ENSTTRP00000007709/1-481 ---------- -----