KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:04 2014 Check: 00 .. Name: ENSTTRP00000006652/1-307 Len: 454 Check: 4666 Weight: 1.00 Name: ENSBTAP00000054400/1-352 Len: 454 Check: 3528 Weight: 1.00 Name: ENSP00000331692/1-348 Len: 454 Check: 2355 Weight: 1.00 Name: bmy_07569T0/1-411 Len: 454 Check: 3847 Weight: 1.00 Name: BACU001457/1-116 Len: 454 Check: 6214 Weight: 1.00 // 1 50 ENSTTRP00000006652/1-307 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054400/1-352 ---------- ---------- ---------- ---------- ---------- ENSP00000331692/1-348 ---------- ---------- ---------- ---------- ---------- bmy_07569T0/1-411 GGTAGWEAGT RGGKEGRKEE KREEKRRREE KRIEEEKRRK EGDEEGSGGA BACU001457/1-116 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006652/1-307 ---------- ---------- ---------- ---------- ----MPRSFL ENSBTAP00000054400/1-352 ---------- ---------- ---------- ---------- ----MPRSFP ENSP00000331692/1-348 ---------- ---------- ---------- ---------- ----MPRSFL bmy_07569T0/1-411 EEETQDRRAE ERTALVRRHP KARVGTRAAS AAPRMVTGPR RGRSPPASRL BACU001457/1-116 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006652/1-307 VKKIKGDGFQ CSGVPAPTYH PLETAY--VL PGARGPPEDN GYAPHCLPPS ENSBTAP00000054400/1-352 GQEGQTDTFS S--------A DLESSYGRAR SDLGVRLQEK GYLNDYAGPA ENSP00000331692/1-348 VKKVKLDAFS S--------A DLESAYGRAR SDLGAPLHDK GYLSDYVGPS bmy_07569T0/1-411 RRPTAPEPCR NHAQILPGQE DLESSYGRSR SDLGERLQEK GYLNDYAGPA BACU001457/1-116 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006652/1-307 S-YDADQKPG LDLGPA-EPA YPPAAPEEY- ------SDPE SPQSSLSAR- ENSBTAP00000054400/1-352 SVYDGDAEAA LLKGPSPEPM YAAAVRGELG PAAAGSAPPP TPRPELATAA ENSP00000331692/1-348 SVYDGDAEAA LLKGPSPEPM YAAAVRGELG PAAAGSAPPP TPRPELATAA bmy_07569T0/1-411 SVYDGDAEAA LLKGPSPEPM YAAAVRGELG PAAAGSAPPP TPRPELATAA BACU001457/1-116 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006652/1-307 --YFRGEAAV TDSYSMDAFF ISDGRSRRRR G--------- --------GG ENSBTAP00000054400/1-352 GGYINGDAAV SEGYAADAFF ITDGRSRRKA ANASAAAAPS AASAPAPDGD ENSP00000331692/1-348 GGYINGDAAV SEGYAADAFF ITDGRSRRKA SNAGSAAAPS TASAAAPDGD bmy_07569T0/1-411 GGYINGDAAV SEGYAADAFF ITDGRSRRKA ANANAAAAPS TASAAAPDGD BACU001457/1-116 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000006652/1-307 GGDAGGAGDA GSAGGRAGRA GTPAGGGH-- ---------- -RHACAECGK ENSBTAP00000054400/1-352 GGGGVGAGTR GAGSGAGGRG GARAGAGTEA RAGPGAGSSG GRHACGECGK ENSP00000331692/1-348 AGGGGGAGGR SLGSGPGGRG GTRAGAGTEA RAGPGAAGAG GRHACGECGK bmy_07569T0/1-411 GGGG------ ---------- ---------- ---------- -------CGK BACU001457/1-116 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000006652/1-307 TYATSSNLSR HKQTHRSLDS QLARKCPTCG KAYVSMPALA MHVLTHNLRH ENSBTAP00000054400/1-352 TYATSSNLSR HKQTHRSLDS QLARRCPTCG KVYVSMPAMA MHLLTHDLRH ENSP00000331692/1-348 TYATSSNLSR HKQTHRSLDS QLARRCPTCG KVYVSMPAMA MHLLTHDLRH bmy_07569T0/1-411 TYATSSNLSR HKQTHRSLDS QLARRCPTCG KVYVSMPAMA MHLLTHDLRH BACU001457/1-116 ---------- ---------- ---------- --------MA MHLLTHDLRH 351 400 ENSTTRP00000006652/1-307 KCGVCGKAFS RPWLLQGHMR SHTGEKPFGC AHCGKAFADR SNLRAHMQTH ENSBTAP00000054400/1-352 KCGVCGKAFS RPWLLQGHMR SHTGEKPFGC AHCGKAFADR SNLRAHMQTH ENSP00000331692/1-348 KCGVCGKAFS RPWLLQGHMR SHTGEKPFGC AHCGKAFADR SNLRAHMQTH bmy_07569T0/1-411 KCGVCGKAFS RPWLLQGHMR SHTGEKPFGC AHCGKAFADR SNLRAHMQTH BACU001457/1-116 KCGVCGKAFS RPWLLQGHMR SHTGEKPFGC AHCGKAFADR SNLRAHMQTH 401 450 ENSTTRP00000006652/1-307 SAFKHYRCRQ CDKTFALKSY LHKHCEAACV KGAE---PPP PPPAGLAS-- ENSBTAP00000054400/1-352 SAFKHFQCKR CKKSFALKSY LNKHYESACF KGAAAGGPSA PAPTAPPQLS ENSP00000331692/1-348 SAFKHFQCKR CKKSFALKSY LNKHYESACF KGGA-GGPAA PAP---PQLS bmy_07569T0/1-411 SAFKHFQCKR CKKSFALKSY LNKHYESACF KGAAAGGPPA PAPAASPQLS BACU001457/1-116 SAFKHFQCKR CKKSFALKSY LNKHYESACF KGAAAGGPPA PAPAASPQLS 451 500 ENSTTRP00000006652/1-307 ---- ENSBTAP00000054400/1-352 PVQA ENSP00000331692/1-348 PVQA bmy_07569T0/1-411 PVQA BACU001457/1-116 PVQA