KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:05 2014 Check: 00 .. Name: ENSBTAP00000054408/1-578 Len: 623 Check: 3408 Weight: 1.00 Name: ENSP00000442397/1-599 Len: 623 Check: 9738 Weight: 1.00 Name: bmy_13880T0/1-567 Len: 623 Check: 2530 Weight: 1.00 Name: ENSTTRP00000014558/1-599 Len: 623 Check: 3647 Weight: 1.00 // 1 50 ENSBTAP00000054408/1-578 -MP------- HPLTGGPAPP TPLDTVGLVD QRL------- ------GDAG ENSP00000442397/1-599 -MP------- SSLPGSQVPH PTLDAVDLVE KTL------- ------RNEG bmy_13880T0/1-567 MVPLGGLGSW VNINGAQYTA GHVCAQRIFD LQLLLACVSS PKVPLTAHTG ENSTTRP00000014558/1-599 -MP------- SSLACAQDPP ATLDTVGLVD QRL------- ------GNAG 51 100 ENSBTAP00000054408/1-578 ISGSASILED RDMDPWALPQ LKDTGQAWRD LSAAGRALRV LTGFLKACGL ENSP00000442397/1-599 TSSSAPVLEE GDTDPWTLPQ LKDTSQPWKE LRVAGRLRRV AGSVLKACGL bmy_13880T0/1-567 TSGSAPILED GDVDPWALPQ LKDTGQSWKE LSMAGRVLQV VAGFLKACGL ENSTTRP00000014558/1-599 TSGSAPILED GDVDPWALPQ LKDTGQSWKE LSMAGRVLQG AAGFLKACGL 101 150 ENSBTAP00000054408/1-578 LGGLYLFICS LDILSSAFQL LGSKVTGDIF KDNVVLSNPV AGLVIGVLVT ENSP00000442397/1-599 LGSLYFFICS LDVLSSAFQL LGSKVAGDIF KDNVVLSNPV AGLVIGVLVT bmy_13880T0/1-567 LGSLYLFICS LDTLSSAFQL LGSKVAGDIF TDNVVLSNPV AGLVIGVLVT ENSTTRP00000014558/1-599 LGSLYLFICS LDILSSAFQL LGSKVAGDIF KDNVVLSNPV AGLVIGVLGT 151 200 ENSBTAP00000054408/1-578 VLVQSSSTSS SIVVSMVASK LLTVRASVPI IMGVNVGTSI TSTLVSMAQS ENSP00000442397/1-599 ALVQSSSTSS SIVVSMVAAK LLTVRVSVPI IMGVNVGTSI TSTLVSMAQS bmy_13880T0/1-567 VLVQSSSTSS SIVVSMVASK LLTVRASVPV IMGVNVGTSI TSTLVSMAQS ENSTTRP00000014558/1-599 VLVQSSSTSS SIVVSMVASK LLTVRASVPV IMGVNVGTSV TSTLVSMAQS 201 250 ENSBTAP00000054408/1-578 GDRDEFRRAF GGSAVHGIFN WLTALVLLPL ESAAAPLERL SALILGTASL ENSP00000442397/1-599 GDRDEFQRAF SGSAVHGIFN WLTVLVLLPL ESATALLERL SELALGAASL bmy_13880T0/1-567 GDRDEFRRAF GGSAVHGVFN WLTALILLPL ESAAAPLERL SALALGAASL ENSTTRP00000014558/1-599 GDRDAFRRAF GGSAVHGVFN WLTALTLLPL ESAAAPLERL SALALGAASL 251 300 ENSBTAP00000054408/1-578 QPGGHTPDIL KVLTRPLTHL IVQLDADVLM GSATGNTTNR SLIKRWCGTR ENSP00000442397/1-599 TPRAQAPDIL KVLTKPLTHL IVQLDSDMIM SSATGNATNS SLIKHWCGTT bmy_13880T0/1-567 QPGGHAPDIL KVLTRPLTHL IVQLDADVIT GSGTGNATNS SLIKRWCGTK ENSTTRP00000014558/1-599 QPGGRAPDIL KVLTRPLTRL IVQLDADVIT GRGTGNATNS SLIKRWCGTE 301 350 ENSBTAP00000054408/1-578 EQTTAGNSSY CGAAAGGPCP GKNGSASEEP LPCRHLFAGT ALADLAVGLI ENSP00000442397/1-599 GQPTQEN-SS CGAF--GPCT EKNSTAPADR LPCRHLFAGT ELTDLAVGCI bmy_13880T0/1-567 GQTTAGNRSN CGAAAGGPCP ERDSPAAEET LPY------- ---------- ENSTTRP00000014558/1-599 VQTTAGN-SS CGGH--GPCP ARNSSAAEEQ LPCRHLFEGT ALADLAVGFI 351 400 ENSBTAP00000054408/1-578 LLAASLLVLC SCLVLIVKLL NSTLRGRVAQ AVRTVINAG- ---------- ENSP00000442397/1-599 LLAGSLLVLC GCLVLIVKLL NSVLRGRVAQ VVRTVINADF PFPLGWLGGY bmy_13880T0/1-567 ---------- ---------- ---------- ---------F PFPFGWLSGY ENSTTRP00000014558/1-599 LLAASLLVLC ACLALIVKLL SSTLRGRVGQ AVSTVVNADF PSPFGWLSGY 401 450 ENSBTAP00000054408/1-578 ---AAGSG-- ---AAAGXTC SPATPLRSQG TVGCGKSVPT TVTIREGHAS ENSP00000442397/1-599 LAVLAGAGLT FALQSSSVFT AAVVPLMGVG VISLDRAYPL LLGSNIGTTT bmy_13880T0/1-567 LAILVGAGLT FVLQSSSVFT AAIVPLMGVR VISLERAYPL FLGSNIGTTT ENSTTRP00000014558/1-599 LAILVGAGLT FALQSSSVFT AAVVPLMGVR VISLERAYPL FLGSNIGTTT 451 500 ENSBTAP00000054408/1-578 QG-----AQA PEALPPSLQV ALIHFFFNLA GILLWYVVPI LRLPVPLAKY ENSP00000442397/1-599 TALLAALASP ADRMLSALQV ALIHFFFNLA GILLWYLVPA LRLPIPLARH bmy_13880T0/1-567 TALLAALASP SDMLISAVQV ALIHFFFNLA GILLWYVVPV LRLPIPLAKR ENSTTRP00000014558/1-599 TALLAALASP SDMLISAVQV ALIHFFFNLA GILLWYVVPV LRLPIPLAKR 501 550 ENSBTAP00000054408/1-578 FGNLTASYRW VAVAYLLLCF LVLPLAAFGL SLAGGAVLAA VGAPLVVLVL ENSP00000442397/1-599 FGVVTARYRW VAGVYLLLGF LLLPLAAFGL SLAGGMELAA VGGPLVGLVL bmy_13880T0/1-567 FGDLTARYRW VAVAYLLLSF LLLPLAAFGL SLAGSTALAA VGGPLVGLVL ENSTTRP00000014558/1-599 FGDLTARYRW VAVAYLLLSF LLLPLAACGL SLAGSTVLAA VGGPLLVLVL 551 600 ENSBTAP00000054408/1-578 LVALVTVLQR HRPAWLPRRL RSWAWLPLWL RSLEPWDLLV RRCCPCKACS ENSP00000442397/1-599 LVILVTVLQR RRPAWLPVRL RSWAWLPVWL HSLEPWDRLV TRCCPCNVCS bmy_13880T0/1-567 LTILVAILQW HRPAWLPRRL RSWAWLPLWL RSLEPWDRLV SHCCPCKACS ENSTTRP00000014558/1-599 LIILVAILQR HRPAWLPRRL RSWAWLPLWL RSLEPWDRLV SRCCPCKACS 601 650 ENSBTAP00000054408/1-578 PPQAVAKETH CYENPQVLAS QQL ENSP00000442397/1-599 PPKATTKEAY CYENPEILAS QQL bmy_13880T0/1-567 PPQAAAKEAH CYENPEVLAS QQL ENSTTRP00000014558/1-599 PPQAAAKEAH CYENPEVLAS HQL