KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:06 2014 Check: 00 .. Name: ENSTTRP00000003805/1-694 Len: 1015 Check: 7870 Weight: 1.00 Name: BACU006340/1-817 Len: 1015 Check: 2237 Weight: 1.00 Name: bmy_17377T0/1-793 Len: 1015 Check: 705 Weight: 1.00 Name: ENSBTAP00000054410/1-713 Len: 1015 Check: 5585 Weight: 1.00 // 1 50 ENSTTRP00000003805/1-694 ---------- ---------- ---------- ---------- ---------- BACU006340/1-817 MEAAGGGGGG RGLEALSWPL LPLH------ ---------- ---LLPGASA bmy_17377T0/1-793 -----AGCSP CGPPAPRLSL APARHHRCSQ AAGERGAGSP AGGLARLTRS ENSBTAP00000054410/1-713 ---------- ---------A LP-------- ---------- ---------- 51 100 ENSTTRP00000003805/1-694 -PSPTYVYFE NSSSNPYLIR RIEELNKTAN GNVEAKVVCF YRRRDISSTL BACU006340/1-817 SPRLDYVYFE NSSSNPYLIR RIEELNKTAS GNVEAKVVCF YRRRDISSTL bmy_17377T0/1-793 RPFADYVYFE NSSSNPYLIR RIEELNKTAS GNVEAKVVCF YRRRDISSTL ENSBTAP00000054410/1-713 QPFADYVYFE NSSSNPYLIR RIEELNKTAS GNVEAKVVCF YRRRDISSSL 101 150 ENSTTRP00000003805/1-694 IALADKHATL SVCYKTGSGA DNGEEGETEE EMENPEMADL PEKLKHQLRH BACU006340/1-817 IALADKHATL SVCYKPGSGA DNGEEGETEE EMENPEMADL PEKLKHQLRH bmy_17377T0/1-793 IALADKHATL SVCYKTGSGA DNGEEGETEE EMENPEMADL PEKLKHQLRH ENSBTAP00000054410/1-713 IALADKHATL SVCYKTGSGA DTGEEGEIEE EMENPEMVDL PEKLKHQLRH 151 200 ENSTTRP00000003805/1-694 RELFLSRQLE SLPATHIR-- ---------- ---------- -GKCSVTL-- BACU006340/1-817 RELFLKRQLE SLPATHIR-- ---------- ---------- -GKCSVTL-- bmy_17377T0/1-793 RELFLSRQLE SLPATHIRYP GAWGGHEGVP PPTSGSQSSG AGAAAAHTDP ENSBTAP00000054410/1-713 RELFLSRQLE SLPATHIR-- ---------- ---------- -GKCSVTL-- 201 250 ENSTTRP00000003805/1-694 -LNETESLKS YL-------- ----EREDFF FYSLVYDPQQ KTLLADKGEI BACU006340/1-817 -LNETESLKS YL-------- ----EREDFF FYSLVYDPQQ KTLLADKGEI bmy_17377T0/1-793 HPEEPSALTQ ELAAARGAGA ARSNHKGDFF FYSLVYDPQQ KTLLADKGEI ENSBTAP00000054410/1-713 -LNETESLKS YL-------- ----EREDFF FYSLVYDPQQ KTLLADKGEI 251 300 ENSTTRP00000003805/1-694 RVGNRYQADI TDLLKEGEED GRDQAKLETK VWEVHNPLVD KQIDQFLVVA BACU006340/1-817 R--------- ----GTGEED GRDQSKLETK LWEARNPLVD KQIDQFLVVA bmy_17377T0/1-793 RVGNRYQADI TDLLKEGEED GRDQSKLETK VWEAHNPLVD KQIDQFLVVA ENSBTAP00000054410/1-713 RVGNRYQADI TDLLKEGEED GRDQSKLETK VWEARNPLVD KQIDQFLVVA 301 350 ENSTTRP00000003805/1-694 RXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU006340/1-817 RSVGTFARAL DCSSSVRQPS LHMSAAAASR DITLFHAMDT LHRSVYDVAK bmy_17377T0/1-793 RSVGTFARAL DCSSSVRQPS LHMSAAAASR DITLFHAMDT LHRSVYDVAK ENSBTAP00000054410/1-713 RSVGTFARAL DCSSSVRQPS LHMSAAAASR DITLFHAMDT LHRSVYDVAK 351 400 ENSTTRP00000003805/1-694 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLPW BACU006340/1-817 AIAALVPQGG PVLCRDEMEE WSASEASLFE EALEKYGKDF TDIQQDFVST bmy_17377T0/1-793 AISALVPQGG PVLCRDEMEE WSASEASLFE EALEKYGKDF TDIQQDFLPW ENSBTAP00000054410/1-713 AISALVPQGG PVLCRDEMEE WSASEASLFE EALEKYGKDF TDIQQDFLPW 401 450 ENSTTRP00000003805/1-694 KSLTSIIEYY YMWKTTDRYV QQKRLKAAEA ESKLKQVYIP NYNKPNPNQI BACU006340/1-817 GG-------- YMWKTTDRYV QQKRLKAAEA ESKLKQVYIP NYNKPNPNQI bmy_17377T0/1-793 KSLTSIIEYY YMWKTTDRYV QQKRLKAAEA ESKLKQVYIP NYNKPNPNQI ENSBTAP00000054410/1-713 KSLTSIIEYY YMWKTTDRYV QQKRLKAAEA ESKLKQVYIP NYNKPNPNQI 451 500 ENSTTRP00000003805/1-694 SVNNVKAGVV NGAGAPGQSP GAGRACESCY TTQSYQWYSW GPPNMQCRLC BACU006340/1-817 SVNNVKAGVV NGAGAPGQSP GAGRACESCY T--------- ---------- bmy_17377T0/1-793 SVNNVKAGVV NGAGAPGQSP GAGRACESCY TTQSYQWYSW GPPNMQCRLC ENSBTAP00000054410/1-713 SVNNVKAGVV NGAGPPGQSP GAGRACESCY TTQSYQWYSW GPPNMQCRLC 501 550 ENSTTRP00000003805/1-694 ASCWTYWKKY GGLKMPTRLD GERPGPNRSN MSPHGIPARS SGSPKFAMKT BACU006340/1-817 ---------- ---------- ---------- --------RS SGSPKFAMKT bmy_17377T0/1-793 ASCWTYWKKY GGLKMPTRLD GERPGPNRSN MSPHGIPARS SGSPKFAMKT ENSBTAP00000054410/1-713 ASCWTYWKKY GGLKMPTRLD GERPGPNRSN MSPHGIPARS SGSPKFAMKT 551 600 ENSTTRP00000003805/1-694 RQAFYLHTTK LTRIARRLCR EILRPWHAAR HPYMPINSAA IKAECTARLP BACU006340/1-817 RQAFYLHTTK LTRIARRLCR EILRPWHAAR HPYMPINSAA IKAECLARLP bmy_17377T0/1-793 RQAFYLHTTK LTRIARRLCR EILRPWHAAR HPYMPINSAA IKAECTARLP ENSBTAP00000054410/1-713 RQAFYLHTTK LTRIARRLCR EILRPWHAAR HPYMPINSAA IKAECTARLP 601 650 ENSTTRP00000003805/1-694 GASQSPLVLK QAARKPLEAV LRHLETHPRP PKPDPVKSVS GVLGGLTPAK BACU006340/1-817 GASQSPLVLK QAARKPLEAV LRHL------ ---------- ---------- bmy_17377T0/1-793 GASQSPLVLK QAARKPLEAV LRHLETHPRP PKPEPVKSVS GVLSGLTPAK ENSBTAP00000054410/1-713 EASQSPLVLK QATRKPLEAV LRFLETHPRP PKPDPVKSVS GVLSGLTPAK 651 700 ENSTTRP00000003805/1-694 SAPVINNGSP TILGKRSYEQ HNGVDGNVKK RLLMPSRGLA NHGQTRHMGP BACU006340/1-817 ---------- ---------- ---------- -------GLA NHGQTRHMGP bmy_17377T0/1-793 SAPVINRGSP TILGKRGYDQ HNGVDGNVKK RLLMPSRGLA NHGQTRHMGP ENSBTAP00000054410/1-713 SAPVINNGSP TILGKRSYEQ HNGVDGNVKK RLLMPSRGLA NHGQTRHMGP 701 750 ENSTTRP00000003805/1-694 SRNLLLNGKA YPTKVRLIRG GSLPPVKRRR MNWIDAPDDV FYMATEETRK BACU006340/1-817 SRNLLLNGKA YPTKVRLIRG GSLPPVKRRR MNWIDAPDDV FYMATEETRV bmy_17377T0/1-793 SRNLLLNGKA YPTKVRLIRG GSLPPVKRRR MNWIDAPDDV FYMATEETRK ENSBTAP00000054410/1-713 SRNLLLNGKA YPTKVRLIRG GSLPPVKRRR MNWIDAPDDV FYMATEETRK 751 800 ENSTTRP00000003805/1-694 IR-------- ---------- ---------- ---------- KLLSYSETQR BACU006340/1-817 MRVPETQRES RASGQQKVVA VGEQAGATWL PGGDEGDPAQ RLPRSGEDSG bmy_17377T0/1-793 IR-------- ---------- ---------- ---------- KLLSSSETKR ENSBTAP00000054410/1-713 IR-------- ---------- ---------- ---------- KLLSSSETKR 801 850 ENSTTRP00000003805/1-694 AARRTY---- ---------- ---------- ---------- ---------- BACU006340/1-817 GSRRLSAGGQ EGAGPDPPPA PAEKVSSLGK DWHRFCLRCE HCSKTLTPGG bmy_17377T0/1-793 AARRPY---- ---------- ---------- ---------- ---------- ENSBTAP00000054410/1-713 AARRPY---- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000003805/1-694 ------KPIA LRPSQTLMLR P--------- ---------- ---------- BACU006340/1-817 HAEHDGKPFC HKPCYATLFG PKGVNIGGAG SYIYEKPSAE KPQVTGPIEV bmy_17377T0/1-793 ------KPIA LRPSQALPLR P--------- ---------- ---------- ENSBTAP00000054410/1-713 ------KPIA LRPSQALPLR P--------- ---------- ---------- 901 950 ENSTTRP00000003805/1-694 ---------- ---------- ---------- ---------- ---------- BACU006340/1-817 PVARAEERKA SGPPKGPSKA SSVTTFTGEP NVCPRCNKRV YFAEKVTSLG bmy_17377T0/1-793 ---------- --APPAPVND EPIV------ ---------- ---------- ENSBTAP00000054410/1-713 ---------- --PPPAPVND EPII------ ---------- ---------- 951 1000 ENSTTRP00000003805/1-694 ---------- ---------- ---------- ---------- ---------- BACU006340/1-817 KDWHRPCLRC ERCGKTLTPG GHAEHDGQPY CHKPCYGILF GPKGVNTGAV bmy_17377T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054410/1-713 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000003805/1-694 ---------- ----- BACU006340/1-817 GSYIYDKDPE GKVQP bmy_17377T0/1-793 ---------- --IED ENSBTAP00000054410/1-713 ---------- --IED